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2017 | OriginalPaper | Buchkapitel

2. A Multi-Modal CMOS Sensor Platform Towards Personalized DNA Sequencing

verfasst von : Yu Jiang, Xu Liu, Xiwei Huang, Yang Shang, Mei Yan, Hao Yu

Erschienen in: Smart Sensors and Systems

Verlag: Springer International Publishing

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Abstract

Precision medicine requires scalable bio-instrument for a personalized DNA sequencing, which can be label-free, cost-efficient, and high-throughput. This chapter mainly presents three kinds of CMOS-based label-free sensors, including: (1) a high-sensitivity ion-sensitive field-effect transistor (ISFET) sensor with pH-to-time-to-voltage conversion (pH-TVC); (2) a dual-mode sensor with image and chemical modes for high accuracy; and (3) a THz metamaterial sensor with electrical resonance detection. The developed CMOS multi-modal sensor platform can show a scaled solution for future personalized DNA sequencing.

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Literatur
1.
Zurück zum Zitat Rothberg JM, Hinz W, Rearick TM et al (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475(7356):348–352CrossRef Rothberg JM, Hinz W, Rearick TM et al (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475(7356):348–352CrossRef
2.
Zurück zum Zitat Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74(12):5463–5467CrossRef Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74(12):5463–5467CrossRef
3.
Zurück zum Zitat Metzker ML (2010) Sequencing technologies—the next generation. Nat Rev Genet 11(1):31–46CrossRef Metzker ML (2010) Sequencing technologies—the next generation. Nat Rev Genet 11(1):31–46CrossRef
4.
Zurück zum Zitat Toumazou C, Shepherd LM, Reed SC et al (2013) Simultaneous DNA amplification and detection using a pH-sensing semiconductor system. Nat Methods 10(7):641–646CrossRef Toumazou C, Shepherd LM, Reed SC et al (2013) Simultaneous DNA amplification and detection using a pH-sensing semiconductor system. Nat Methods 10(7):641–646CrossRef
5.
Zurück zum Zitat Jiang Y, Liu X, Huang X et al (2015) A 201 mV/pH, 375 fps and 512 × 576 CMOS ISFET sensor in 65 nm CMOS technology. In: 2015 IEEE custom integrated circuits conference (CICC), San Jose, CA, September, pp 1–4 Jiang Y, Liu X, Huang X et al (2015) A 201 mV/pH, 375 fps and 512 × 576 CMOS ISFET sensor in 65 nm CMOS technology. In: 2015 IEEE custom integrated circuits conference (CICC), San Jose, CA, September, pp 1–4
6.
Zurück zum Zitat Huang X, Wang F, Guo J et al (2014) A 64 × 64 1200 fps CMOS ion-image sensor with suppressed fixed-pattern-noise for accurate high-throughput DNA sequencing. In: 2014 symposium on VLSI circuits digest of technical papers, Honolulu, HI, June, pp 1–2 Huang X, Wang F, Guo J et al (2014) A 64 × 64 1200 fps CMOS ion-image sensor with suppressed fixed-pattern-noise for accurate high-throughput DNA sequencing. In: 2014 symposium on VLSI circuits digest of technical papers, Honolulu, HI, June, pp 1–2
7.
Zurück zum Zitat Huang X, Yu H, Liu X et al (2015) A dual-mode large-arrayed CMOS ISFET sensor for accurate and high-throughput pH sensing in biomedical diagnosis. IEEE Trans Biomed Eng 62(9):2224–2233CrossRef Huang X, Yu H, Liu X et al (2015) A dual-mode large-arrayed CMOS ISFET sensor for accurate and high-throughput pH sensing in biomedical diagnosis. IEEE Trans Biomed Eng 62(9):2224–2233CrossRef
8.
Zurück zum Zitat Kumar S, Tao C, Chien M et al (2012) PEG-labeled nucleotides and nanopore detection for single molecule DNA sequencing by synthesis. Sci Rep 2(684):1–8 Kumar S, Tao C, Chien M et al (2012) PEG-labeled nucleotides and nanopore detection for single molecule DNA sequencing by synthesis. Sci Rep 2(684):1–8
9.
Zurück zum Zitat Bergveld P (2003) Thirty years of ISFETOLOGY: what happened in the past 30 years and what may happen in the next 30 years. Sens Actuators B Chem 88(1):1–20CrossRef Bergveld P (2003) Thirty years of ISFETOLOGY: what happened in the past 30 years and what may happen in the next 30 years. Sens Actuators B Chem 88(1):1–20CrossRef
10.
Zurück zum Zitat Bausells J et al (1999) Ion-sensitive field effect transistors fabricated in a commercial CMOS technology. Sens Actuators B Chem 57:56–62CrossRef Bausells J et al (1999) Ion-sensitive field effect transistors fabricated in a commercial CMOS technology. Sens Actuators B Chem 57:56–62CrossRef
11.
Zurück zum Zitat Milgrew M, Cumming D (2008) A proton camera array technology for direct extracellular ion imaging. In: Proceedings of the 2008. IEEE International Symposium on Industrial Electronics, Cambridge, July, pp 2051–2055 Milgrew M, Cumming D (2008) A proton camera array technology for direct extracellular ion imaging. In: Proceedings of the 2008. IEEE International Symposium on Industrial Electronics, Cambridge, July, pp 2051–2055
12.
Zurück zum Zitat Rothberg JM et al (2010) Methods and apparatus for measuring analytes. U.S. Patent 20100301398 A1, Dec 2, 2010 Rothberg JM et al (2010) Methods and apparatus for measuring analytes. U.S. Patent 20100301398 A1, Dec 2, 2010
13.
Zurück zum Zitat Liu Y et al (2011) An extended CMOS ISFET model incorporating the physical design geometry and the effects on performance and offset variation. IEEE Trans Electron Devices 58(12):4414–4422CrossRef Liu Y et al (2011) An extended CMOS ISFET model incorporating the physical design geometry and the effects on performance and offset variation. IEEE Trans Electron Devices 58(12):4414–4422CrossRef
14.
Zurück zum Zitat Al-Ahdal A, Toumazou C (2012) High gain ISFET based vMOS chemical inverter. Sens Actuators B 171:110–117CrossRef Al-Ahdal A, Toumazou C (2012) High gain ISFET based vMOS chemical inverter. Sens Actuators B 171:110–117CrossRef
15.
Zurück zum Zitat Premanode B, Silawan N, Toumazou C (2007) Drift reduction in ion-sensitive FETs using correlated double sampling. Electron Lett 43:1–2CrossRef Premanode B, Silawan N, Toumazou C (2007) Drift reduction in ion-sensitive FETs using correlated double sampling. Electron Lett 43:1–2CrossRef
16.
Zurück zum Zitat Milgrew M, Cumming D (2008) Matching the transconductance characteristics of CMOS ISFET arrays by removing trapped charge. IEEE Trans Electron Devices 55(4):1074–1079CrossRef Milgrew M, Cumming D (2008) Matching the transconductance characteristics of CMOS ISFET arrays by removing trapped charge. IEEE Trans Electron Devices 55(4):1074–1079CrossRef
17.
Zurück zum Zitat Hu Y, Georgiou P (2014) A robust ISFET pH-measuring front-end for chemical reaction monitoring. IEEE Trans Biomed Circuits Syst 8(2):177–185CrossRef Hu Y, Georgiou P (2014) A robust ISFET pH-measuring front-end for chemical reaction monitoring. IEEE Trans Biomed Circuits Syst 8(2):177–185CrossRef
18.
Zurück zum Zitat Georgiou P, Toumazou C (2009) ISFET characteristics in CMOS and their application to weak inversion operation. Sens Actuators B Chem 143(1):211–217CrossRef Georgiou P, Toumazou C (2009) ISFET characteristics in CMOS and their application to weak inversion operation. Sens Actuators B Chem 143(1):211–217CrossRef
19.
Zurück zum Zitat Park JK et al (2014) SOI dual-gate ISFET with variable oxide capacitance and channel thickness. Solid-State Electron 97:2–7CrossRef Park JK et al (2014) SOI dual-gate ISFET with variable oxide capacitance and channel thickness. Solid-State Electron 97:2–7CrossRef
20.
Zurück zum Zitat Huang X et al (2014) A contact-imaging based microfluidic cytometer with machine-learning for single-frame super-resolution processing. PLoS One 9(8), e104539CrossRef Huang X et al (2014) A contact-imaging based microfluidic cytometer with machine-learning for single-frame super-resolution processing. PLoS One 9(8), e104539CrossRef
21.
Zurück zum Zitat Ji H et al (2007) Contact imaging: simulation and experiment. IEEE Trans Circuits Syst I Regul Pap 54(8):1698–1710CrossRef Ji H et al (2007) Contact imaging: simulation and experiment. IEEE Trans Circuits Syst I Regul Pap 54(8):1698–1710CrossRef
22.
Zurück zum Zitat Fossum ER, Hondongwa DB (2014) A review of the pinned photodiode for CCD and CMOS image sensors. IEEE J Electron Devices Soc 2(3):33–43CrossRef Fossum ER, Hondongwa DB (2014) A review of the pinned photodiode for CCD and CMOS image sensors. IEEE J Electron Devices Soc 2(3):33–43CrossRef
24.
Zurück zum Zitat Nemeth B et al (2012) High-resolution real-time ion-camera system using a CMOS-based chemical sensor array for proton imaging. Sens Actuators B, Chem 171–172:747–752CrossRef Nemeth B et al (2012) High-resolution real-time ion-camera system using a CMOS-based chemical sensor array for proton imaging. Sens Actuators B, Chem 171–172:747–752CrossRef
25.
Zurück zum Zitat Chan WP et al (2010) An integrated ISFETs instrumentation system in standard CMOS technology. IEEE J Solid State Circuits 45:1923–1934CrossRef Chan WP et al (2010) An integrated ISFETs instrumentation system in standard CMOS technology. IEEE J Solid State Circuits 45:1923–1934CrossRef
26.
Zurück zum Zitat Manickam A et al (2012) A fully-electronic charge-based DNA sequencing CMOS biochip. In: 2012 Symposium on VLSI Circuits (VLSIC), Honolulu, HI, June, pp 126–127 Manickam A et al (2012) A fully-electronic charge-based DNA sequencing CMOS biochip. In: 2012 Symposium on VLSI Circuits (VLSIC), Honolulu, HI, June, pp 126–127
27.
Zurück zum Zitat Bolivar PH, Nagel M et al (2004) Label-free THz sensing of genetic sequences: towards ‘THz biochips’. Philos Transact A Math Phys Eng Sci 362(1815):323–333CrossRef Bolivar PH, Nagel M et al (2004) Label-free THz sensing of genetic sequences: towards ‘THz biochips’. Philos Transact A Math Phys Eng Sci 362(1815):323–333CrossRef
28.
Zurück zum Zitat Huang X, Jiang Y et al (2015) A CMOS THz-sensing system towards label-free DNA sequencing. In: IEEE international conference on ASIC (ASICON), Nov 2015 (Invited Special Session), Sichuan, China, November, pp 1–4 Huang X, Jiang Y et al (2015) A CMOS THz-sensing system towards label-free DNA sequencing. In: IEEE international conference on ASIC (ASICON), Nov 2015 (Invited Special Session), Sichuan, China, November, pp 1–4
29.
Zurück zum Zitat Brucherseifer M, Nagel M, Bolivar PH, Kurz H, Bosserhoff A, Buttner R (2000) Label-free probing of the binding state of DNA by time-domain terahertz sensing. Appl Phys Lett 77(24):4049–4051 Brucherseifer M, Nagel M, Bolivar PH, Kurz H, Bosserhoff A, Buttner R (2000) Label-free probing of the binding state of DNA by time-domain terahertz sensing. Appl Phys Lett 77(24):4049–4051
30.
Zurück zum Zitat Nagel M, Bolivar PH, Brucherseifer M, Kurz H (2002) Integrated THz technology for label-free genetic diagnostics. Appl Phys Lett 80(1):154–156 Nagel M, Bolivar PH, Brucherseifer M, Kurz H (2002) Integrated THz technology for label-free genetic diagnostics. Appl Phys Lett 80(1):154–156
31.
Zurück zum Zitat Zheng N et al (2013) Metamaterial sensor platforms for Terahertz DNA sensing. In: 2013 13th IEEE International Conference on Nanotechnology, Beijing, China, August, pp 315–320 Zheng N et al (2013) Metamaterial sensor platforms for Terahertz DNA sensing. In: 2013 13th IEEE International Conference on Nanotechnology, Beijing, China, August, pp 315–320
32.
Zurück zum Zitat Chernev AL et al (2015) DNA detection by THz pumping. Semiconductors 49(7):944–948 Chernev AL et al (2015) DNA detection by THz pumping. Semiconductors 49(7):944–948
33.
Zurück zum Zitat Cao C, Zhang J, Wen X et al (2013) Metamaterials-based label-free nanosensor for conformation and affinity biosensing. ACS Nano 7(9):7583–7591CrossRef Cao C, Zhang J, Wen X et al (2013) Metamaterials-based label-free nanosensor for conformation and affinity biosensing. ACS Nano 7(9):7583–7591CrossRef
Metadaten
Titel
A Multi-Modal CMOS Sensor Platform Towards Personalized DNA Sequencing
verfasst von
Yu Jiang
Xu Liu
Xiwei Huang
Yang Shang
Mei Yan
Hao Yu
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-33201-7_2

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