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2015 | OriginalPaper | Buchkapitel

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis

verfasst von : Osvaldo Graña, Miriam Rubio-Camarillo, Florentino Fdez-Riverola, David G. Pisano, Daniel Glez-Peña

Erschienen in: 9th International Conference on Practical Applications of Computational Biology and Bioinformatics

Verlag: Springer International Publishing

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Abstract

Many bioinformatic programs have been developed to analyze data from RNA-seq experiments. These programs are widely used and often included in computational pipelines. Nevertheless, there does not seem to be a precise definition of what constitutes a proper workflow for this kind of data. We present here a new workflow that takes into account the most common requirements for RNA-seq analysis, and that is implemented as an automatic pipeline to perform an efficient and complete evaluation.

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Vorheriges Kapitel Identification of a Putative Ganoderic Acid Pathway Enzyme in a Ganoderma Australe Transcriptome by Means of a Hidden Markov Model

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Titel: A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis
verfasst von: Osvaldo Graña
Miriam Rubio-Camarillo
Florentino Fdez-Riverola
David G. Pisano
Daniel Glez-Peña
Verlag: Springer International Publishing
Buch: 9th International Conference on Practical Applications of Computational Biology and Bioinformatics
Print ISBN: 978-3-319-19775-3

Electronic ISBN: 978-3-319-19776-0

Copyright-Jahr: 2015
DOI: https://doi.org/10.1007/978-3-319-19776-0_13

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