Skip to main content

2017 | OriginalPaper | Buchkapitel

6. Ab Initio Modelling of the Structure and Properties of Crystalline Calcium Carbonate

verfasst von : Raffaella Demichelis, Paolo Raiteri, Julian D. Gale

Erschienen in: New Perspectives on Mineral Nucleation and Growth

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Many biominerals occur as crystalline materials, and their formation often involves steps where metastable crystalline phases appear. The latter can correspond either to intermediate species that then transform into more stable phases or to the final mineral crystal. Because of their instability and rare occurrence, the structure and properties of such intermediate metastable phases may not always be fully understood from experiment alone. Vaterite (CaCO3) is one such phase, and recent advances in understanding its complex structure were achieved through ab initio modelling techniques. This chapter will highlight the importance of achieving a comprehensive understanding of the atomic details of the crystalline phases involved in biomineralisation. Examples will be focused on calcium carbonate, and especially on vaterite, and ab initio methods based on density functional theory (DFT) will be proposed as the main tool to undertake this kind of investigation, together with more traditional techniques such as spectroscopic methods, microscopies and X-ray and neutron diffraction.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Fußnoten
1
We do not consider time dependence here.
 
2
Additional terms that are generally null or negligible should be considered in certain circumstances, like when in the presence of an external applied field (e.g. if we want to explore dielectric properties) or if we are interested in computing magnetic properties.
 
3
Aragonite is used in this example, and only Raman active frequencies have been considered, but similar comments hold also for other minerals and for IR active modes.
 
4
Unless stated otherwise, all energies given in the text were calculated with the PBEsol functional; for vaterite similar values are obtained also with other functionals.
 
5
The conventional choice for this space group would be P1; however, C1 is used to indicate that it has been obtained from the \(\overline{C}1\) structure originally proposed by Mugnaioli et al. (2012). Despite this structure being triclinic, its conventional cell has α ≃ γ ≃ 90, and this is why in a previous publication we referred to this model as quasi-monoclinic or “6-layer” monoclinic.
 
Literatur
Zurück zum Zitat Adamo C, Barone V (1999) Toward reliable density functional methods without adjustable parameters: the PBE0 model. J Chem Phys 110:6158–6170CrossRef Adamo C, Barone V (1999) Toward reliable density functional methods without adjustable parameters: the PBE0 model. J Chem Phys 110:6158–6170CrossRef
Zurück zum Zitat Alía M, Díaz de Mera Y, Edwards HGM, González Martín P, López Andrés S (1997) FT-Raman and infrared spectroscopic study of aragonite-strontianite (Ca x Sr1−x CO3) solid solution. Spectrochim Acta A 53:2347–2362CrossRef Alía M, Díaz de Mera Y, Edwards HGM, González Martín P, López Andrés S (1997) FT-Raman and infrared spectroscopic study of aragonite-strontianite (Ca x Sr1−x CO3) solid solution. Spectrochim Acta A 53:2347–2362CrossRef
Zurück zum Zitat Antao SM, Hassan I (2010) Temperature dependence of the structural parameters in the transformation of aragonite to calcite, as determined from in situ synchrotron X-ray diffraction data. Can Miner 48:1225–1236CrossRef Antao SM, Hassan I (2010) Temperature dependence of the structural parameters in the transformation of aragonite to calcite, as determined from in situ synchrotron X-ray diffraction data. Can Miner 48:1225–1236CrossRef
Zurück zum Zitat Antao SM, Hassan I, Mulder WH, Lee PL, Toby BH (2009) In situ study of the \(R\bar{3}c \rightarrow R\bar{3}m\) orientational disorder on calcite. Phys Chem Miner 36:159–169CrossRef Antao SM, Hassan I, Mulder WH, Lee PL, Toby BH (2009) In situ study of the \(R\bar{3}c \rightarrow R\bar{3}m\) orientational disorder on calcite. Phys Chem Miner 36:159–169CrossRef
Zurück zum Zitat Balan E, Blanchard anf M, Pinilla C, Lazzeri M (2014) First-principles modeling of sulfate incorporation and34S/32S isotopic fractionation in different calcium carbonates. Chem Geol 374–375:84–91 Balan E, Blanchard anf M, Pinilla C, Lazzeri M (2014) First-principles modeling of sulfate incorporation and34S/32S isotopic fractionation in different calcium carbonates. Chem Geol 374–375:84–91
Zurück zum Zitat Becke AD (1993) Density functional theochemistry. III The role of exact exchange. J Chem Phys 98:5648–5652 Becke AD (1993) Density functional theochemistry. III The role of exact exchange. J Chem Phys 98:5648–5652
Zurück zum Zitat Bilotti I, Biscarini P, Castiglioni E, Ferranti F, Kuroda A (2002) Reflectance circular dichroism of solid-statechiral coordination compounds. Chirality 14:750–756CrossRef Bilotti I, Biscarini P, Castiglioni E, Ferranti F, Kuroda A (2002) Reflectance circular dichroism of solid-statechiral coordination compounds. Chirality 14:750–756CrossRef
Zurück zum Zitat Bradley WF, Graf DL, Roth RS (1966) The vaterite-type ABO3 rare-earth borates. Acta Crystallogr 20:283–287CrossRef Bradley WF, Graf DL, Roth RS (1966) The vaterite-type ABO3 rare-earth borates. Acta Crystallogr 20:283–287CrossRef
Zurück zum Zitat Burgess KNM, Bryce DL (2015) On the crystal structure of the vaterite polymorph of caco3. a calcium-43 solid-state nmr and computational assessment. Solid State Nucl Magn Reson 65:75–83CrossRef Burgess KNM, Bryce DL (2015) On the crystal structure of the vaterite polymorph of caco3. a calcium-43 solid-state nmr and computational assessment. Solid State Nucl Magn Reson 65:75–83CrossRef
Zurück zum Zitat Carteret C, De La Pierre M, Dussot M, Pascale F, Erba A, Dovesi R (2013) The vibrational spectrum of CaCO3 aragonite: a combined experimental and quantum-mechanical investigation. J Chem Phys 138:014201CrossRef Carteret C, De La Pierre M, Dussot M, Pascale F, Erba A, Dovesi R (2013) The vibrational spectrum of CaCO3 aragonite: a combined experimental and quantum-mechanical investigation. J Chem Phys 138:014201CrossRef
Zurück zum Zitat Cartwright JHE, Checa AG, Gale JD, Gebauer D, Sainz-D\(\mathrm{\acute{i}}\) az CI (2012) Calcium carbonate polyamorphism and its role in biomineralization: how many amorphous calcium carbonates are there? Angew Chem Int Ed 51:11960–11970 Cartwright JHE, Checa AG, Gale JD, Gebauer D, Sainz-D\(\mathrm{\acute{i}}\) az CI (2012) Calcium carbonate polyamorphism and its role in biomineralization: how many amorphous calcium carbonates are there? Angew Chem Int Ed 51:11960–11970
Zurück zum Zitat Casassa S, Demichelis R (2012) Relative energy of aluminum hydroxides: the role of electron correlation. J Phys Chem C 116:13313–13321CrossRef Casassa S, Demichelis R (2012) Relative energy of aluminum hydroxides: the role of electron correlation. J Phys Chem C 116:13313–13321CrossRef
Zurück zum Zitat Chen C-C, Lin C-C, Liu L-G, Sinogeikin SV, Bass JD (2001) Elasticity of single-crystal calcite and rhodochrosite by Brillouin spectroscopy. Am Miner 86:1525–1529CrossRef Chen C-C, Lin C-C, Liu L-G, Sinogeikin SV, Bass JD (2001) Elasticity of single-crystal calcite and rhodochrosite by Brillouin spectroscopy. Am Miner 86:1525–1529CrossRef
Zurück zum Zitat De La Pierre M, Carteret C, Maschio L, André E, Orlando R, Dovesi R (2014a) The Raman spectrum of CaCO3 polymorphs calcite and aragonite. A combined experimental and computational study. J Chem Phys 140:164509 De La Pierre M, Carteret C, Maschio L, André E, Orlando R, Dovesi R (2014a) The Raman spectrum of CaCO3 polymorphs calcite and aragonite. A combined experimental and computational study. J Chem Phys 140:164509
Zurück zum Zitat De La Pierre M, Demichelis R, Dovesi R (2016) Molecular modeling of geochemical reactions: an introduction, chapter 13. Vibrational spectroscopy of minerals through ab initio methods. John Wiley and Sons, Chichester De La Pierre M, Demichelis R, Dovesi R (2016) Molecular modeling of geochemical reactions: an introduction, chapter 13. Vibrational spectroscopy of minerals through ab initio methods. John Wiley and Sons, Chichester
Zurück zum Zitat De La Pierre M, Demichelis R, Wehrmeister U, Jacob DE, Raiteri P, Gale JD, Orlando R (2014b) Probing the multiple structures of vaterite through combined computational and experimental Raman spectroscopy. J Phys Chem C 118:27493–27501CrossRef De La Pierre M, Demichelis R, Wehrmeister U, Jacob DE, Raiteri P, Gale JD, Orlando R (2014b) Probing the multiple structures of vaterite through combined computational and experimental Raman spectroscopy. J Phys Chem C 118:27493–27501CrossRef
Zurück zum Zitat Del Ben M, Hutter J, VandeVondele J (2012) Second-order Møller Plesset perturbation theory in the condensed phase: An efficient and massively parallel Gaussian and plane waves approach. J Chem Theory Comput 8:4177–4188CrossRef Del Ben M, Hutter J, VandeVondele J (2012) Second-order Møller Plesset perturbation theory in the condensed phase: An efficient and massively parallel Gaussian and plane waves approach. J Chem Theory Comput 8:4177–4188CrossRef
Zurück zum Zitat Demichelis R, Raiteri P, Gale JD (2014) Structure of hydrated calcium carbonates: a first-principle study. J Cryst Growth 401:33–37CrossRef Demichelis R, Raiteri P, Gale JD (2014) Structure of hydrated calcium carbonates: a first-principle study. J Cryst Growth 401:33–37CrossRef
Zurück zum Zitat Demichelis R, Raiteri P, Gale JD, Quigley D, Gebauer D (2011) Stable prenucleation mineral clusters are liquid-like ionic polymers. Nat Commun 2:590CrossRef Demichelis R, Raiteri P, Gale JD, Quigley D, Gebauer D (2011) Stable prenucleation mineral clusters are liquid-like ionic polymers. Nat Commun 2:590CrossRef
Zurück zum Zitat Demichelis R, Raiteri P, Gale JD, Dovesi R (2012) A new structural model for disorder in vaterite from first-principles calculations. CrystEngComm 14:44–47CrossRef Demichelis R, Raiteri P, Gale JD, Dovesi R (2012) A new structural model for disorder in vaterite from first-principles calculations. CrystEngComm 14:44–47CrossRef
Zurück zum Zitat Demichelis R, Raiteri P, Gale JD, Dovesi R (2013a) Examining the accuracy of density functional theory for predicting the thermodynamics of water incorporation into minerals: the hydrates of calcium carbonate. J Phys Chem C 117:17814–17823CrossRef Demichelis R, Raiteri P, Gale JD, Dovesi R (2013a) Examining the accuracy of density functional theory for predicting the thermodynamics of water incorporation into minerals: the hydrates of calcium carbonate. J Phys Chem C 117:17814–17823CrossRef
Zurück zum Zitat Demichelis R, Raiteri P, Gale JD, Dovesi R (2013b) The multiples structure of vaterite. Cryst Growth Des 13:2247–2251CrossRef Demichelis R, Raiteri P, Gale JD, Dovesi R (2013b) The multiples structure of vaterite. Cryst Growth Des 13:2247–2251CrossRef
Zurück zum Zitat Donoghue M, Hepburn PH, Ross SD (1971) Factors affecting the infrared spectra of planar anions with D 3h , symmetry—V: the origin of the splitting of the out-of-plane bending mode in carbonates and nitrates. Spectrochim Acta A 27:1065–1072CrossRef Donoghue M, Hepburn PH, Ross SD (1971) Factors affecting the infrared spectra of planar anions with D 3h , symmetry—V: the origin of the splitting of the out-of-plane bending mode in carbonates and nitrates. Spectrochim Acta A 27:1065–1072CrossRef
Zurück zum Zitat Dovesi R, Orlando R, Erba A, Zicovich-Wilson CM, Civalleri B, Casassa S, Maschio L, Ferrabone M, De La Pierre M, D’Arco P, Noël Y, Causà M, Rérat M, Kirtman B (2014a) CRYSTAL14: a program for the ab initio investigation of crystalline solids. Int J Quantum Chem 114: 1287–1317CrossRef Dovesi R, Orlando R, Erba A, Zicovich-Wilson CM, Civalleri B, Casassa S, Maschio L, Ferrabone M, De La Pierre M, D’Arco P, Noël Y, Causà M, Rérat M, Kirtman B (2014a) CRYSTAL14: a program for the ab initio investigation of crystalline solids. Int J Quantum Chem 114: 1287–1317CrossRef
Zurück zum Zitat Dovesi R, Saunders VR, Roetti C, Orlando R, Zicovich-Wilson CM, Pascale F, Civalleri B, Doll K, Harrison NM, Bush IJ, D’Arco Ph, Llunell M, Causà M, Noël Y (2014b) CRYSTAL 2014 user’s manual Dovesi R, Saunders VR, Roetti C, Orlando R, Zicovich-Wilson CM, Pascale F, Civalleri B, Doll K, Harrison NM, Bush IJ, D’Arco Ph, Llunell M, Causà M, Noël Y (2014b) CRYSTAL 2014 user’s manual
Zurück zum Zitat Dupont L, Portemer F, Figlarz M (1997) Synthesis and study of a well crystallized CaCO3 vaterite showing a new habitus. J Mater Chem 7:797–800CrossRef Dupont L, Portemer F, Figlarz M (1997) Synthesis and study of a well crystallized CaCO3 vaterite showing a new habitus. J Mater Chem 7:797–800CrossRef
Zurück zum Zitat Erba A, Dovesi R (2016) Molecular modeling of geochemical reactions: an introduction, chapter 3. Ab initio Modelling of Minerals. John Wiley and Sons, Chichester Erba A, Dovesi R (2016) Molecular modeling of geochemical reactions: an introduction, chapter 3. Ab initio Modelling of Minerals. John Wiley and Sons, Chichester
Zurück zum Zitat Fernández-Díaz L, Fernández-González A, Prieto M (2010) The role of sulfate groups in controlling CaCO3 polymorphism. Geochim Cosmochim Acta 74:6064–6076CrossRef Fernández-Díaz L, Fernández-González A, Prieto M (2010) The role of sulfate groups in controlling CaCO3 polymorphism. Geochim Cosmochim Acta 74:6064–6076CrossRef
Zurück zum Zitat Frech R, Wang EC, Bates JB (1980) The IR and Raman spectra of CaCO3 (aragonite). Spectrochim Acta A 36:915–919CrossRef Frech R, Wang EC, Bates JB (1980) The IR and Raman spectra of CaCO3 (aragonite). Spectrochim Acta A 36:915–919CrossRef
Zurück zum Zitat Gabrielli C, Jaouhari R, Joiret S, Maurin G (2000) In situ Raman spectroscopy applied to electrochemical scaling. Determination of the structure of vaterite. J Raman Spectrosc 31:497–501CrossRef Gabrielli C, Jaouhari R, Joiret S, Maurin G (2000) In situ Raman spectroscopy applied to electrochemical scaling. Determination of the structure of vaterite. J Raman Spectrosc 31:497–501CrossRef
Zurück zum Zitat Gebauer D, Völkel A, Cölfen H (2008) Stable prenucleation calcium carbonate clusters. Science 322:1819–1822CrossRef Gebauer D, Völkel A, Cölfen H (2008) Stable prenucleation calcium carbonate clusters. Science 322:1819–1822CrossRef
Zurück zum Zitat Gebauer D, Gunawidjaja PN, Ko JYP, Bacsik Z, Aziz B, Liu LJ, Hu YF, Bergstrom L, Tai CW, Sham TK, Eden M, Hedin N (2010) Proto-calcite and proto-vaterite in amorphous calcium carbonates. Angew Chem Int Ed 49:8889–8891CrossRef Gebauer D, Gunawidjaja PN, Ko JYP, Bacsik Z, Aziz B, Liu LJ, Hu YF, Bergstrom L, Tai CW, Sham TK, Eden M, Hedin N (2010) Proto-calcite and proto-vaterite in amorphous calcium carbonates. Angew Chem Int Ed 49:8889–8891CrossRef
Zurück zum Zitat Gillet P, McMillan P, Schott J, Badro J, Grzechnik A (1996) Thermodynamic properties and isotopic fractionation of calcite from vibrational spectroscopy of18O-substituted calcite. Geochim Cosmochim Acta 60:3471–3485CrossRef Gillet P, McMillan P, Schott J, Badro J, Grzechnik A (1996) Thermodynamic properties and isotopic fractionation of calcite from vibrational spectroscopy of18O-substituted calcite. Geochim Cosmochim Acta 60:3471–3485CrossRef
Zurück zum Zitat Grimme S (2006) Semiempirical GGA-type density functional constructed with a long-range dispersion contribution. J Comput Chem 27:1787–1799CrossRef Grimme S (2006) Semiempirical GGA-type density functional constructed with a long-range dispersion contribution. J Comput Chem 27:1787–1799CrossRef
Zurück zum Zitat Hasse B, Ehrenberg H, Marxen JC, Becker W, Epple M (2000) Calcium carbonate modifications in the mineralized shell of the freshwater snail Biomphalariaglabrata. Chem Eur J 6:3679–3685CrossRef Hasse B, Ehrenberg H, Marxen JC, Becker W, Epple M (2000) Calcium carbonate modifications in the mineralized shell of the freshwater snail Biomphalariaglabrata. Chem Eur J 6:3679–3685CrossRef
Zurück zum Zitat Kabalah-Amitai L, Mayzel B, Kauffmann Y, Fitch AN, Bloch L, lGilbert PU, Pokroy B (2013) Vaterite crystals contain two interspersed crystal structures. Science 340:454–456 Kabalah-Amitai L, Mayzel B, Kauffmann Y, Fitch AN, Bloch L, lGilbert PU, Pokroy B (2013) Vaterite crystals contain two interspersed crystal structures. Science 340:454–456
Zurück zum Zitat Kahmi SR (1963) On the structure of vaterite, CaCO3. Acta Crystallogr 16:770–772CrossRef Kahmi SR (1963) On the structure of vaterite, CaCO3. Acta Crystallogr 16:770–772CrossRef
Zurück zum Zitat Königsberger E, Königsberger LC, Gamsjäger H (1999) Low-themperature thermodynamic model for the system Na2CO3-MgCO3-CaCO3-H2O. Geochim Cosmochim Acta 63:3105–3199CrossRef Königsberger E, Königsberger LC, Gamsjäger H (1999) Low-themperature thermodynamic model for the system Na2CO3-MgCO3-CaCO3-H2O. Geochim Cosmochim Acta 63:3105–3199CrossRef
Zurück zum Zitat Le Bail A, Ouheni S, Chateigner D (2011) Microtwinning hypothesis for a more ordered vaterite model. Powder Diffr 26:16–21CrossRef Le Bail A, Ouheni S, Chateigner D (2011) Microtwinning hypothesis for a more ordered vaterite model. Powder Diffr 26:16–21CrossRef
Zurück zum Zitat Li L, Wentzcovitch RM, Weidner DJ, Da Silva CRS (2007) Vibrational and thermodynamic properties of forsterite at mantle conditions. J Geophys Res 112:B05206 Li L, Wentzcovitch RM, Weidner DJ, Da Silva CRS (2007) Vibrational and thermodynamic properties of forsterite at mantle conditions. J Geophys Res 112:B05206
Zurück zum Zitat McConnell JDC (1960) Vaterite from Ballycraigy, Larne, Nothern Ireland. Mineral Mag 32:535–544CrossRef McConnell JDC (1960) Vaterite from Ballycraigy, Larne, Nothern Ireland. Mineral Mag 32:535–544CrossRef
Zurück zum Zitat Medeiros SK, Albuquerque EL, Maia Jr FF, Caetano EWS, Freire VN (2007) First-principles calculations of structural, electronic, and optical absorption properties of CaCO3 Vaterite. Chem Phys Lett 435:59–64CrossRef Medeiros SK, Albuquerque EL, Maia Jr FF, Caetano EWS, Freire VN (2007) First-principles calculations of structural, electronic, and optical absorption properties of CaCO3 Vaterite. Chem Phys Lett 435:59–64CrossRef
Zurück zum Zitat Meyer HJ (1959) Über vaterit und seine struktur. Angew Chem 71:678–679 Meyer HJ (1959) Über vaterit und seine struktur. Angew Chem 71:678–679
Zurück zum Zitat Meyer HJ (1969) Struktur und Fehlordnung des Vateritis. Z Kristallogr 128:183–212CrossRef Meyer HJ (1969) Struktur und Fehlordnung des Vateritis. Z Kristallogr 128:183–212CrossRef
Zurück zum Zitat Mikkelsen A, Andersen AB, Engelsen SB, Hansen HCB, Larsen O, Skibsted LH (1999) Presence and dehydration of ikaite, calcium carbonate hexahydrate, in frozen shrimp shell. J Agric Food Chem 47:911–917CrossRef Mikkelsen A, Andersen AB, Engelsen SB, Hansen HCB, Larsen O, Skibsted LH (1999) Presence and dehydration of ikaite, calcium carbonate hexahydrate, in frozen shrimp shell. J Agric Food Chem 47:911–917CrossRef
Zurück zum Zitat Mugnaioli E, Andrusenko I, Schüler T, Loges N, Dinnebier RE, Panthöfer M, Tremel W, Kolb U (2012) Ab initio structure determination of vaterite by automated electron diffraction. Angew Chem Int Ed 51:1–7CrossRef Mugnaioli E, Andrusenko I, Schüler T, Loges N, Dinnebier RE, Panthöfer M, Tremel W, Kolb U (2012) Ab initio structure determination of vaterite by automated electron diffraction. Angew Chem Int Ed 51:1–7CrossRef
Zurück zum Zitat Munemoto T, Fukushi K (2008) Transformation kinetics of monohydrocalcite to aragonite in acqueous solutions. J Miner Petrol Sci 103:345–349CrossRef Munemoto T, Fukushi K (2008) Transformation kinetics of monohydrocalcite to aragonite in acqueous solutions. J Miner Petrol Sci 103:345–349CrossRef
Zurück zum Zitat Nye JF (1985) Physical properties of crystals. Oxford University Press, Oxford Nye JF (1985) Physical properties of crystals. Oxford University Press, Oxford
Zurück zum Zitat Perdew J, Ruzsinsky A, Csonka GI, Vydrov OA, Scuseria GE, Constantin LA, Zhou X, Burke K (2008) Restoring the density-gradient expansion for exchange in solids and surfaces. Phys Rev Lett 100:136406CrossRef Perdew J, Ruzsinsky A, Csonka GI, Vydrov OA, Scuseria GE, Constantin LA, Zhou X, Burke K (2008) Restoring the density-gradient expansion for exchange in solids and surfaces. Phys Rev Lett 100:136406CrossRef
Zurück zum Zitat Perdew JP, Burke K, Ernzerhof M (1996) Generalized gradient approximation made simple. Phys Rev Lett 77:3865–3868CrossRef Perdew JP, Burke K, Ernzerhof M (1996) Generalized gradient approximation made simple. Phys Rev Lett 77:3865–3868CrossRef
Zurück zum Zitat Pisani C, Maschio L, Casassa S, Halo M, Schütz M, Usvyat D (2008) Periodic local MP2 method for the study of electronic correlation in crystals: theory and preliminary applications. J Comput Chem 29:2113–2124CrossRef Pisani C, Maschio L, Casassa S, Halo M, Schütz M, Usvyat D (2008) Periodic local MP2 method for the study of electronic correlation in crystals: theory and preliminary applications. J Comput Chem 29:2113–2124CrossRef
Zurück zum Zitat Pouget EM, Bomans PHH, Goos JACM, Frederik PM, de With G, Sommerdijk NAJM (2009) The initial stages of template-controlled CaCO3 Fformation Rrevealed by cryo-TEM. Science 323:1455–1458CrossRef Pouget EM, Bomans PHH, Goos JACM, Frederik PM, de With G, Sommerdijk NAJM (2009) The initial stages of template-controlled CaCO3 Fformation Rrevealed by cryo-TEM. Science 323:1455–1458CrossRef
Zurück zum Zitat Prencipe M, Pascale F, Zicovich-Wilson CM, Saunders VR, Orlando R, Dovesi R (2004) The vibrational spectrum of calcite (CaCO3): an ab initio quantum-mechanical calculation. Phys Chem Miner 31:559–564CrossRef Prencipe M, Pascale F, Zicovich-Wilson CM, Saunders VR, Orlando R, Dovesi R (2004) The vibrational spectrum of calcite (CaCO3): an ab initio quantum-mechanical calculation. Phys Chem Miner 31:559–564CrossRef
Zurück zum Zitat Qiao L, Feng QL (2007) Study on twin stacking faults in vaterite tablets of freshwater lacklustre pearls. J Cryst Growth 304:253–256CrossRef Qiao L, Feng QL (2007) Study on twin stacking faults in vaterite tablets of freshwater lacklustre pearls. J Cryst Growth 304:253–256CrossRef
Zurück zum Zitat Rodriguez-Blanco JD, Shaw S, Benning LG (2011) The kinetics and mechanisms of amorphous calcium carbonate (ACC) crystallization to calcite, via vaterite. Nanoscale 3:265–271CrossRef Rodriguez-Blanco JD, Shaw S, Benning LG (2011) The kinetics and mechanisms of amorphous calcium carbonate (ACC) crystallization to calcite, via vaterite. Nanoscale 3:265–271CrossRef
Zurück zum Zitat Sato M, Matsuda S (1969) Structure of vaterite and infrared spectra. Z Kristallogr 129:405–410CrossRef Sato M, Matsuda S (1969) Structure of vaterite and infrared spectra. Z Kristallogr 129:405–410CrossRef
Zurück zum Zitat Schaebitz M, Wirth R, Janssen C, Dresen G (2015, in press) First evidence of caco3-iii and caco3-iiib – high-pressure polymorphs of calcite – authigenically formed in near surface sediments. Am Mineral Schaebitz M, Wirth R, Janssen C, Dresen G (2015, in press) First evidence of caco3-iii and caco3-iiib – high-pressure polymorphs of calcite – authigenically formed in near surface sediments. Am Mineral
Zurück zum Zitat Sherman D (2016) Molecular modeling of geochemical reactions: an introduction, chapter 1 Introduction to methods of computational geochemistry. John Wiley and Sons, Chichester Sherman D (2016) Molecular modeling of geochemical reactions: an introduction, chapter 1 Introduction to methods of computational geochemistry. John Wiley and Sons, Chichester
Zurück zum Zitat Skinner HCW, Osbaldiston GW, Wilner AN (1977) Monohydrocalcite in a guinea pig bladder stone, a novel occurrence. Am Mineral 62:273–277 Skinner HCW, Osbaldiston GW, Wilner AN (1977) Monohydrocalcite in a guinea pig bladder stone, a novel occurrence. Am Mineral 62:273–277
Zurück zum Zitat Spann N, Harper EM, Aldridge DC (2010) The unusual mineral vaterite in shells of the freshwater bivalve corbicula fluminea from the uk. Naturwissenschaften 97:743–751CrossRef Spann N, Harper EM, Aldridge DC (2010) The unusual mineral vaterite in shells of the freshwater bivalve corbicula fluminea from the uk. Naturwissenschaften 97:743–751CrossRef
Zurück zum Zitat Swainson IP (2008) The structure of monohydrocalcite and the phase composition of the beachrock deposits of Lake Butler and Lake Fellmongery, South Australia. Am Mineral 93:1014–1018CrossRef Swainson IP (2008) The structure of monohydrocalcite and the phase composition of the beachrock deposits of Lake Butler and Lake Fellmongery, South Australia. Am Mineral 93:1014–1018CrossRef
Zurück zum Zitat Swainson IP, Hammond RP (2003) Hydrogen bonding in ikaite, CaCO3 ⋅ 6 H2O. Mineral Mag 67:555–562CrossRef Swainson IP, Hammond RP (2003) Hydrogen bonding in ikaite, CaCO3 ⋅ 6 H2O. Mineral Mag 67:555–562CrossRef
Zurück zum Zitat Tang CC, Thompson SP, Parker JE, Lennie AR, Azoughc F, Katod K (2009) The ikaite-to-vaterite transformation: new evidence from diffraction and imaging. J Appl Cryst 42:225–233CrossRef Tang CC, Thompson SP, Parker JE, Lennie AR, Azoughc F, Katod K (2009) The ikaite-to-vaterite transformation: new evidence from diffraction and imaging. J Appl Cryst 42:225–233CrossRef
Zurück zum Zitat Valenzano L, Torres FJ, Doll K, Pascale F, Zicovich-Wilson CM, Dovesi R (2006) Ab initio study of the vibrational spectrum and related properties of crystalline compounds; the case of CaCO3 calcite. Z Phys Chem 220:893–912CrossRef Valenzano L, Torres FJ, Doll K, Pascale F, Zicovich-Wilson CM, Dovesi R (2006) Ab initio study of the vibrational spectrum and related properties of crystalline compounds; the case of CaCO3 calcite. Z Phys Chem 220:893–912CrossRef
Zurück zum Zitat Valenzano L, Noël Y, Orlando R, Zicovich-Wilson CM, Ferrero M, Dovesi R (2007) Ab initio vibrational spectra and dielectric properties of carbonates: magnesite, calcite and dolomite. Theor Chem Acc 117:991–1000CrossRef Valenzano L, Noël Y, Orlando R, Zicovich-Wilson CM, Ferrero M, Dovesi R (2007) Ab initio vibrational spectra and dielectric properties of carbonates: magnesite, calcite and dolomite. Theor Chem Acc 117:991–1000CrossRef
Zurück zum Zitat Wallace AF, Hedges LO, Fernandez-Martinez A, Raiteri P, Gale JD, Waychunas GA, Whitelam S, Banfield JF, De Yoreo J (2013) Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions. Science 341:885–889CrossRef Wallace AF, Hedges LO, Fernandez-Martinez A, Raiteri P, Gale JD, Waychunas GA, Whitelam S, Banfield JF, De Yoreo J (2013) Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions. Science 341:885–889CrossRef
Zurück zum Zitat Wang J, Becker U (2009) Structure and carbonate orientation of vaterite (CaCO3). Am Mineral 94:380–386CrossRef Wang J, Becker U (2009) Structure and carbonate orientation of vaterite (CaCO3). Am Mineral 94:380–386CrossRef
Zurück zum Zitat Wang J, Becker U (2012) Energetics and kinetics of carbonate orientational ordering in vaterite calcium carbonate. Am Mineral 97:1427–1436CrossRef Wang J, Becker U (2012) Energetics and kinetics of carbonate orientational ordering in vaterite calcium carbonate. Am Mineral 97:1427–1436CrossRef
Zurück zum Zitat Wehrmeister U, Jacob DE, Soldati AL, Loges N, Häger T, Hofmeister W (2011) Amorphous, nanocrystalline and crystalline calcium carbonates in biological materials. J Raman Spectrosc 42:926–935CrossRef Wehrmeister U, Jacob DE, Soldati AL, Loges N, Häger T, Hofmeister W (2011) Amorphous, nanocrystalline and crystalline calcium carbonates in biological materials. J Raman Spectrosc 42:926–935CrossRef
Zurück zum Zitat Wehrmeister U, Soldati L, Jacob DE, Häger T, Hofmeister W (2010) Raman spectroscopy of synthetic, geological and biological vaterite: a Raman spectroscopic study. J Raman Spectrosc 41:193–201 Wehrmeister U, Soldati L, Jacob DE, Häger T, Hofmeister W (2010) Raman spectroscopy of synthetic, geological and biological vaterite: a Raman spectroscopic study. J Raman Spectrosc 41:193–201
Zurück zum Zitat Wilbur KM, Watabe N (1963) Experimental studies on calcification in mollusc and the alga coccolithus Huxleyi. Ann N Y Acad Sci 109:82–112CrossRef Wilbur KM, Watabe N (1963) Experimental studies on calcification in mollusc and the alga coccolithus Huxleyi. Ann N Y Acad Sci 109:82–112CrossRef
Zurück zum Zitat Wolf G, Lerchner J, Schmidt H, Gamsjäger H, Königsberger E, Schmidt P (1996) Thermodynamics of CaCO3 phase transitions. J Therm Anal 46:353–359CrossRef Wolf G, Lerchner J, Schmidt H, Gamsjäger H, Königsberger E, Schmidt P (1996) Thermodynamics of CaCO3 phase transitions. J Therm Anal 46:353–359CrossRef
Zurück zum Zitat Yu YG, Wentzcovitch RM, Angel RJ (2010) First principles study of thermodynamics and phase transition in low-pressure (P21/c) and high-pressure (C2/c) clinoenstatite MgSiO3. J Geophys Res 115:B02201CrossRef Yu YG, Wentzcovitch RM, Angel RJ (2010) First principles study of thermodynamics and phase transition in low-pressure (P21/c) and high-pressure (C2/c) clinoenstatite MgSiO3. J Geophys Res 115:B02201CrossRef
Metadaten
Titel
Ab Initio Modelling of the Structure and Properties of Crystalline Calcium Carbonate
verfasst von
Raffaella Demichelis
Paolo Raiteri
Julian D. Gale
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-45669-0_6