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2020 | OriginalPaper | Buchkapitel

Assessing the Impact of a Preprocessing Stage on Deep Learning Architectures for Breast Tumor Multi-class Classification with Histopathological Images

verfasst von : Iván Calvo, Saul Calderon, Jordina Torrents-Barrena, Erick Muñoz, Domenec Puig

Erschienen in: High Performance Computing

Verlag: Springer International Publishing

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Abstract

In this work, we assess the impact of the adaptive unsharp mask filter as a preprocessing stage for breast tumour multi-class classification with histopathological images, evaluating two state-of-the-art architectures, not tested so far for this problem to our knowledge: DenseNet, SqueezeNet and a 5-layer baseline deep learning architecture. SqueezeNet is an efficient architecture, which can be useful in environments with restrictive computational resources. According to the results, the filter improved the accuracy from 2% to 4% in the 5-layer baseline architecture, on the other hand, DenseNet and SqueezeNet show a negative impact, losing from 2% to 6% accuracy. Hence, simpler deep learning architectures can take more advantage of filters than complex architectures, which are able to learn the preprocessing filter implemented. Squeeze net yielded the highest per parameter accuracy, while DenseNet achieved a 96% accuracy, defeating previous state of the art architectures by 1% to 5%, making DenseNet a considerably more efficient architecture for breast tumour classification.

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Literatur
1.
Zurück zum Zitat Adeshina, S.A., Adedigba, A.P., Adeniyi, A.A., Aibinu, A.M.: Breast cancer histopathology image classification with deep convolutional neural networks. In: 2018 14th International Conference on Electronics Computer and Computation (ICECCO), pp. 206–212. IEEE (2018) Adeshina, S.A., Adedigba, A.P., Adeniyi, A.A., Aibinu, A.M.: Breast cancer histopathology image classification with deep convolutional neural networks. In: 2018 14th International Conference on Electronics Computer and Computation (ICECCO), pp. 206–212. IEEE (2018)
2.
Zurück zum Zitat Benhammou, Y., Tabik, S., Achchab, B., Herrera, F.: A first study exploring the performance of the state-of-the art CNN model in the problem of breast cancer. In: Proceedings of the International Conference on Learning and Optimization Algorithms: Theory and Applications, p. 47. ACM (2018) Benhammou, Y., Tabik, S., Achchab, B., Herrera, F.: A first study exploring the performance of the state-of-the art CNN model in the problem of breast cancer. In: Proceedings of the International Conference on Learning and Optimization Algorithms: Theory and Applications, p. 47. ACM (2018)
3.
Zurück zum Zitat Bray, F., Ferlay, J., Soerjomataram, I., Siegel, R.L., Torre, L.A., Jemal, A.: Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: Cancer J. Clin. 68(6), 394–424 (2018) Bray, F., Ferlay, J., Soerjomataram, I., Siegel, R.L., Torre, L.A., Jemal, A.: Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: Cancer J. Clin. 68(6), 394–424 (2018)
4.
Zurück zum Zitat Calderon, S., et al.: Assessing the impact of the deceived non local means filter as a preprocessing stage in a convolutional neural network based approach for age estimation using digital hand x-ray images. In: 2018 25th IEEE International Conference on Image Processing (ICIP), pp. 1752–1756. IEEE (2018) Calderon, S., et al.: Assessing the impact of the deceived non local means filter as a preprocessing stage in a convolutional neural network based approach for age estimation using digital hand x-ray images. In: 2018 25th IEEE International Conference on Image Processing (ICIP), pp. 1752–1756. IEEE (2018)
5.
Zurück zum Zitat Carranza-Rojas, J., Calderon-Ramirez, S., Mora-Fallas, A., Granados-Menani, M.: Unsharp masking layer: injecting prior knowledge in convolutional networks for image classification (in press) Carranza-Rojas, J., Calderon-Ramirez, S., Mora-Fallas, A., Granados-Menani, M.: Unsharp masking layer: injecting prior knowledge in convolutional networks for image classification (in press)
6.
Zurück zum Zitat Chen, T., Guestrin, C.: XGBoost: a scalable tree boosting system. In: Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 785–794. ACM (2016) Chen, T., Guestrin, C.: XGBoost: a scalable tree boosting system. In: Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 785–794. ACM (2016)
7.
Zurück zum Zitat Dodge, S., Karam, L.: Understanding how image quality affects deep neural networks. In: 2016 Eighth International Conference on Quality of Multimedia Experience (QoMEX), pp. 1–6. IEEE (2016) Dodge, S., Karam, L.: Understanding how image quality affects deep neural networks. In: 2016 Eighth International Conference on Quality of Multimedia Experience (QoMEX), pp. 1–6. IEEE (2016)
8.
Zurück zum Zitat Donahue, J., et al.: DeCAF: a deep convolutional activation feature for generic visual recognition. In: International Conference on Machine Learning, pp. 647–655 (2014) Donahue, J., et al.: DeCAF: a deep convolutional activation feature for generic visual recognition. In: International Conference on Machine Learning, pp. 647–655 (2014)
9.
Zurück zum Zitat Gandomkar, Z., Brennan, P.C., Mello-Thoms, C.: MuDeRn: multi-category classification of breast histopathological image using deep residual networks. Artif. Intell. Med. 88, 14–24 (2018)CrossRef Gandomkar, Z., Brennan, P.C., Mello-Thoms, C.: MuDeRn: multi-category classification of breast histopathological image using deep residual networks. Artif. Intell. Med. 88, 14–24 (2018)CrossRef
10.
Zurück zum Zitat Gu, Y., Jie, Y.: Densely-connected multi-magnification hashing for histopathological image retrieval. IEEE J. Biomed. Health Inform. 23, 1683–1691 (2018)CrossRef Gu, Y., Jie, Y.: Densely-connected multi-magnification hashing for histopathological image retrieval. IEEE J. Biomed. Health Inform. 23, 1683–1691 (2018)CrossRef
11.
Zurück zum Zitat Gupta, V., Bhavsar, A.: Sequential modeling of deep features for breast cancer histopathological image classification. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 2254–2261 (2018) Gupta, V., Bhavsar, A.: Sequential modeling of deep features for breast cancer histopathological image classification. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 2254–2261 (2018)
12.
Zurück zum Zitat Han, Z., Wei, B., Zheng, Y., Yin, Y., Li, K., Li, S.: Breast cancer multi-classification from histopathological images with structured deep learning model. Sci. Rep. 7(1), 4172 (2017)CrossRef Han, Z., Wei, B., Zheng, Y., Yin, Y., Li, K., Li, S.: Breast cancer multi-classification from histopathological images with structured deep learning model. Sci. Rep. 7(1), 4172 (2017)CrossRef
13.
Zurück zum Zitat Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 4700–4708 (2017) Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 4700–4708 (2017)
14.
Zurück zum Zitat Iandola, F.N., Han, S., Moskewicz, M.W., Ashraf, K., Dally, W.J., Keutzer, K.: SqueezeNet: AlexNet-level accuracy with 50x fewer parameters and \(<\)0.5 mb model size. arXiv preprint arXiv:1602.07360 (2016) Iandola, F.N., Han, S., Moskewicz, M.W., Ashraf, K., Dally, W.J., Keutzer, K.: SqueezeNet: AlexNet-level accuracy with 50x fewer parameters and \(<\)0.5 mb model size. arXiv preprint arXiv:​1602.​07360 (2016)
15.
Zurück zum Zitat Khosravan, N., Celik, H., Turkbey, B., Jones, E.C., Wood, B., Bagci, U.: A collaborative computer aided diagnosis (C-CAD) system with eye-tracking, sparse attentional model, and deep learning. Med. Image Anal. 51, 101–115 (2019)CrossRef Khosravan, N., Celik, H., Turkbey, B., Jones, E.C., Wood, B., Bagci, U.: A collaborative computer aided diagnosis (C-CAD) system with eye-tracking, sparse attentional model, and deep learning. Med. Image Anal. 51, 101–115 (2019)CrossRef
17.
Zurück zum Zitat Lin, S., et al.: Intensity and edge based adaptive unsharp masking filter for color image enhancement. Optik 127(1), 407–414 (2016)CrossRef Lin, S., et al.: Intensity and edge based adaptive unsharp masking filter for color image enhancement. Optik 127(1), 407–414 (2016)CrossRef
18.
Zurück zum Zitat Mehra, R., et al.: Breast cancer histology images classification: training from scratch or transfer learning? ICT Express 4(4), 247–254 (2018)CrossRef Mehra, R., et al.: Breast cancer histology images classification: training from scratch or transfer learning? ICT Express 4(4), 247–254 (2018)CrossRef
19.
Zurück zum Zitat Pertuz, S., Julia, C., Puig, D.: A novel mammography image representation framework with application to image registration. In: 2014 22nd International Conference on Pattern Recognition, pp. 3292–3297. IEEE (2014) Pertuz, S., Julia, C., Puig, D.: A novel mammography image representation framework with application to image registration. In: 2014 22nd International Conference on Pattern Recognition, pp. 3292–3297. IEEE (2014)
20.
Zurück zum Zitat Polesel, A., Ramponi, G., Mathews, V.J.: Image enhancement via adaptive unsharp masking. IEEE Trans. Image Process. 9(3), 505–510 (2000)CrossRef Polesel, A., Ramponi, G., Mathews, V.J.: Image enhancement via adaptive unsharp masking. IEEE Trans. Image Process. 9(3), 505–510 (2000)CrossRef
21.
Zurück zum Zitat Shin, H.C., et al.: Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning. IEEE Trans. Med. Imaging 35(5), 1285–1298 (2016)CrossRef Shin, H.C., et al.: Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning. IEEE Trans. Med. Imaging 35(5), 1285–1298 (2016)CrossRef
22.
Zurück zum Zitat Singh, V.K., et al.: Conditional generative adversarial and convolutional networks for X-ray breast mass segmentation and shape classification. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11071, pp. 833–840. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00934-2_92CrossRef Singh, V.K., et al.: Conditional generative adversarial and convolutional networks for X-ray breast mass segmentation and shape classification. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11071, pp. 833–840. Springer, Cham (2018). https://​doi.​org/​10.​1007/​978-3-030-00934-2_​92CrossRef
23.
Zurück zum Zitat Spanhol, F.A., Oliveira, L.S., Cavalin, P.R., Petitjean, C., Heutte, L.: Deep features for breast cancer histopathological image classification. In: 2017 IEEE International Conference on Systems, Man, and Cybernetics (SMC), pp. 1868–1873. IEEE (2017) Spanhol, F.A., Oliveira, L.S., Cavalin, P.R., Petitjean, C., Heutte, L.: Deep features for breast cancer histopathological image classification. In: 2017 IEEE International Conference on Systems, Man, and Cybernetics (SMC), pp. 1868–1873. IEEE (2017)
24.
Zurück zum Zitat Spanhol, F.A., Oliveira, L.S., Petitjean, C., Heutte, L.: A dataset for breast cancer histopathological image classification. IEEE Trans. Biomed. Eng. 63(7), 1455–1462 (2016)CrossRef Spanhol, F.A., Oliveira, L.S., Petitjean, C., Heutte, L.: A dataset for breast cancer histopathological image classification. IEEE Trans. Biomed. Eng. 63(7), 1455–1462 (2016)CrossRef
25.
Zurück zum Zitat Spanhol, F.A., Oliveira, L.S., Petitjean, C., Heutte, L.: Breast cancer histopathological image classification using convolutional neural networks. In: 2016 International Joint Conference on Neural Networks (IJCNN), pp. 2560–2567. IEEE (2016) Spanhol, F.A., Oliveira, L.S., Petitjean, C., Heutte, L.: Breast cancer histopathological image classification using convolutional neural networks. In: 2016 International Joint Conference on Neural Networks (IJCNN), pp. 2560–2567. IEEE (2016)
Metadaten
Titel
Assessing the Impact of a Preprocessing Stage on Deep Learning Architectures for Breast Tumor Multi-class Classification with Histopathological Images
verfasst von
Iván Calvo
Saul Calderon
Jordina Torrents-Barrena
Erick Muñoz
Domenec Puig
Copyright-Jahr
2020
DOI
https://doi.org/10.1007/978-3-030-41005-6_18