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Erschienen in: Continuum Mechanics and Thermodynamics 3/2021

02.01.2021 | Original Article

Asymptotics and numerical analysis for enzymatic auxiliary reactions

verfasst von: Alberto Maria Bersani, Alessandro Borri, Maria Elisa Tosti

Erschienen in: Continuum Mechanics and Thermodynamics | Ausgabe 3/2021

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Abstract

In this paper we study the mathematical model of auxiliary (or coupled) reactions, a mechanism which describes several chemical reactions. In order to apply singular perturbation techniques, we determine an appropriate perturbation parameter \(\epsilon \) (which is related to the kinetic constants and initial conditions of the model), the inner and outer solutions and the matched expansions of the solutions, up to the first order in \(\epsilon \), in the total quasi-steady-state approximation (tQSSA) framework. The contribution of these expansions can be useful for the estimation of the kinetic parameters of the reaction by means of the interpolation of experimental data with the explicit approximations of the solutions. Some numerical results are discussed, showing the high reliability of the tQSSA with respect to the standard QSSA.

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Literatur
1.
Zurück zum Zitat Bersani, A., Bersani, E., Mastroeni, L.: Deterministic and stochastic models of enzymatic networks-applications to pharmaceutical research. Computer Math Appl 55(5), 879–888 (2008). Modeling and Computational Methods in Genomic SciencesMathSciNetMATHCrossRef Bersani, A., Bersani, E., Mastroeni, L.: Deterministic and stochastic models of enzymatic networks-applications to pharmaceutical research. Computer Math Appl 55(5), 879–888 (2008). Modeling and Computational Methods in Genomic SciencesMathSciNetMATHCrossRef
2.
Zurück zum Zitat Bersani, A., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: Asymptotic analysis of the double phosphorylation mechanism, in a tqssa framework. Submitted to J. Math. Anal. Appl Bersani, A., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: Asymptotic analysis of the double phosphorylation mechanism, in a tqssa framework. Submitted to J. Math. Anal. Appl
3.
Zurück zum Zitat Bersani, A., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: A study case for the analysis of asymptotic expansions beyond the tqssa for inhibitory mechanisms in enzyme kinetics. Commun Appl Ind Math 10(1), 162–181 (2019)MathSciNetMATH Bersani, A., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: A study case for the analysis of asymptotic expansions beyond the tqssa for inhibitory mechanisms in enzyme kinetics. Commun Appl Ind Math 10(1), 162–181 (2019)MathSciNetMATH
4.
Zurück zum Zitat Bersani, A., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: Uniform asymptotic expansions beyond the tqssa for the goldbeter-koshland switch. SIAM J Appl Math 80(3), 1123–1152 (2020)MathSciNetMATHCrossRef Bersani, A., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: Uniform asymptotic expansions beyond the tqssa for the goldbeter-koshland switch. SIAM J Appl Math 80(3), 1123–1152 (2020)MathSciNetMATHCrossRef
5.
Zurück zum Zitat Bersani, A., Borri, A., Milanesi, A., Vellucci, P.: Tihonov theory and center manifolds for inhibitory mechanisms in enzyme kinetics. Commun Appl Ind Math 8(1), 81–102 (2017)MathSciNetMATH Bersani, A., Borri, A., Milanesi, A., Vellucci, P.: Tihonov theory and center manifolds for inhibitory mechanisms in enzyme kinetics. Commun Appl Ind Math 8(1), 81–102 (2017)MathSciNetMATH
6.
Zurück zum Zitat Bersani, A.M., Bersani, E., Dell’Acqua, G., Pedersen, M.G.: New trends and perspectives in nonlinear intracellular dynamics: one century from Michaelis-Menten paper. Contin Mech Thermodyn 27(4), 659–684 (2015)ADSMathSciNetMATHCrossRef Bersani, A.M., Bersani, E., Dell’Acqua, G., Pedersen, M.G.: New trends and perspectives in nonlinear intracellular dynamics: one century from Michaelis-Menten paper. Contin Mech Thermodyn 27(4), 659–684 (2015)ADSMathSciNetMATHCrossRef
7.
Zurück zum Zitat Bersani, A.M., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: Singular perturbation techniques and asymptotic expansions for some complex enzyme reactions. In: W. Lacarbonara, B. Balachandran, J. Ma, J. Tenreiro Machado, G. Stepan (eds.) Nonlinear Dynamics of Structures, Systems and Devices - Proceedings of the First International Nonlinear Dynamics Conference (NODYCON 2019), Volume I, pp. 43–53. Springer, Berlin, Heidelberg (2020) Bersani, A.M., Borri, A., Milanesi, A., Tomassetti, G., Vellucci, P.: Singular perturbation techniques and asymptotic expansions for some complex enzyme reactions. In: W. Lacarbonara, B. Balachandran, J. Ma, J. Tenreiro Machado, G. Stepan (eds.) Nonlinear Dynamics of Structures, Systems and Devices - Proceedings of the First International Nonlinear Dynamics Conference (NODYCON 2019), Volume I, pp. 43–53. Springer, Berlin, Heidelberg (2020)
8.
Zurück zum Zitat Bersani, A.M., Dell’Acqua, G.: Is there anything left to say on enzyme kinetic constants and quasi-steady state approximation? J Math Chem 50(2), 335–344 (2012)MathSciNetMATHCrossRef Bersani, A.M., Dell’Acqua, G.: Is there anything left to say on enzyme kinetic constants and quasi-steady state approximation? J Math Chem 50(2), 335–344 (2012)MathSciNetMATHCrossRef
9.
Zurück zum Zitat Bersani, A.M., Dell’Acqua, G., Tomassetti, G.: On stationary states in the double phosphorylation-dephosphorylation cycle. AIP Conference Proceedings 1389(1), 1208–1211 (2011)ADSCrossRef Bersani, A.M., Dell’Acqua, G., Tomassetti, G.: On stationary states in the double phosphorylation-dephosphorylation cycle. AIP Conference Proceedings 1389(1), 1208–1211 (2011)ADSCrossRef
10.
Zurück zum Zitat Borghans, J., de Boer, R., Segel, L.: Extending the quasi-steady state approximation by changing variables. Bull Math Biol 58, 43–63 (1996)MATHCrossRef Borghans, J., de Boer, R., Segel, L.: Extending the quasi-steady state approximation by changing variables. Bull Math Biol 58, 43–63 (1996)MATHCrossRef
11.
12.
Zurück zum Zitat Chen, L.Y., Goldenfeld, N., Oono, Y.: Renormalization group and singular perturbations: Multiple scales, boundary layers, and reductive perturbation theory. Phys Rev E 54, 376–393 (1996)ADSCrossRef Chen, L.Y., Goldenfeld, N., Oono, Y.: Renormalization group and singular perturbations: Multiple scales, boundary layers, and reductive perturbation theory. Phys Rev E 54, 376–393 (1996)ADSCrossRef
13.
Zurück zum Zitat Ciliberto, A., Capuani, F., Tyson, J.J.: Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation. PLOS Comput Biol 3(3), 1–10 (2007)MathSciNetCrossRef Ciliberto, A., Capuani, F., Tyson, J.J.: Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation. PLOS Comput Biol 3(3), 1–10 (2007)MathSciNetCrossRef
14.
Zurück zum Zitat Coluzzi, B., Bersani, A.M., Bersani, E.: An alternative approach to Michaelis-Menten kinetics that is based on the renormalization group. Math Biosci 299, 28–50 (2018)MathSciNetMATHCrossRef Coluzzi, B., Bersani, A.M., Bersani, E.: An alternative approach to Michaelis-Menten kinetics that is based on the renormalization group. Math Biosci 299, 28–50 (2018)MathSciNetMATHCrossRef
15.
Zurück zum Zitat Cornish-Bowden, A.: Fundamentals of enzyme kinetics. Wiley-Blackwell Weinheim, Germany (2012) Cornish-Bowden, A.: Fundamentals of enzyme kinetics. Wiley-Blackwell Weinheim, Germany (2012)
16.
Zurück zum Zitat Cornish-Bowden, A.: One hundred years of Michaelis-Menten kinetics. Perspect Sci 4, 3–9 (2015)CrossRef Cornish-Bowden, A.: One hundred years of Michaelis-Menten kinetics. Perspect Sci 4, 3–9 (2015)CrossRef
17.
Zurück zum Zitat Dell’Acqua, G., Bersani, A.M.: Bistability and the complex depletion paradox in the double phosphorylation-dephosphorylation cycle. In: BIOINFORMATICS 2011 – Proceedings International Conference on Bioinformatics Models, Methods and Algorithms, Roma, 26–29 gennaio 2011, pp. 55–65 (2011) Dell’Acqua, G., Bersani, A.M.: Bistability and the complex depletion paradox in the double phosphorylation-dephosphorylation cycle. In: BIOINFORMATICS 2011 – Proceedings International Conference on Bioinformatics Models, Methods and Algorithms, Roma, 26–29 gennaio 2011, pp. 55–65 (2011)
18.
Zurück zum Zitat Dell’Acqua, G., Bersani, A.M.: A perturbation solution of Michaelis-Menten kinetics in a "total" framework. J Math Chem 50(5), 1136–1148 (2012)MathSciNetMATHCrossRef Dell’Acqua, G., Bersani, A.M.: A perturbation solution of Michaelis-Menten kinetics in a "total" framework. J Math Chem 50(5), 1136–1148 (2012)MathSciNetMATHCrossRef
19.
Zurück zum Zitat Dell’Acqua, G., Bersani, A.M.: Quasi-steady state approximations and multistability in the double phosphorylation-dephosphorylation cycle. In: Fred, A., Filipe, J., Gamboa, H. (eds.) Biomedical engineering systems and technologies, pp. 155–172. Springer, Berlin Heidelberg (2013)CrossRef Dell’Acqua, G., Bersani, A.M.: Quasi-steady state approximations and multistability in the double phosphorylation-dephosphorylation cycle. In: Fred, A., Filipe, J., Gamboa, H. (eds.) Biomedical engineering systems and technologies, pp. 155–172. Springer, Berlin Heidelberg (2013)CrossRef
20.
Zurück zum Zitat Dingee, J.W., Anton, A.B.: A new perturbation solution to the Michaelis-Menten problem. AIChE J 54(5), 1344–1357 (2008)CrossRef Dingee, J.W., Anton, A.B.: A new perturbation solution to the Michaelis-Menten problem. AIChE J 54(5), 1344–1357 (2008)CrossRef
21.
Zurück zum Zitat Dvořák, I., Šiška, J.: Analysis of metabolic systems with complex slow and fast dynamics. Bull Math Biol 51(2), 255–274 (1989)MATHCrossRef Dvořák, I., Šiška, J.: Analysis of metabolic systems with complex slow and fast dynamics. Bull Math Biol 51(2), 255–274 (1989)MATHCrossRef
22.
Zurück zum Zitat Eilertsen, J., Schnell, S.: A kinetic analysis of coupled (or auxiliary) enzyme reactions. Bull Math Biol 80, 3154–3183 (2018)MathSciNetMATHCrossRef Eilertsen, J., Schnell, S.: A kinetic analysis of coupled (or auxiliary) enzyme reactions. Bull Math Biol 80, 3154–3183 (2018)MathSciNetMATHCrossRef
23.
Zurück zum Zitat Eilertsen, J., Stroberg, W., Schnell, S.: Characteristic, completion or matching timescales? an analysis of temporary boundaries in enzyme kinetics. J Theor Biol 481, 28–43 (2019)MathSciNetMATHCrossRef Eilertsen, J., Stroberg, W., Schnell, S.: Characteristic, completion or matching timescales? an analysis of temporary boundaries in enzyme kinetics. J Theor Biol 481, 28–43 (2019)MathSciNetMATHCrossRef
25.
Zurück zum Zitat Giorgio, I., dell’Isola, F., Andreaus, U., Alzahrani, F., Hayat, T., Lekszycki, T.: On mechanically driven biological stimulus for bone remodeling as a diffusive phenomenon. Biomech Model Mechanobiol 18(6), 1639–1663 (2019)CrossRef Giorgio, I., dell’Isola, F., Andreaus, U., Alzahrani, F., Hayat, T., Lekszycki, T.: On mechanically driven biological stimulus for bone remodeling as a diffusive phenomenon. Biomech Model Mechanobiol 18(6), 1639–1663 (2019)CrossRef
26.
Zurück zum Zitat Hatakeyama, M., Kimura, S., Naka, T., Kawasaki, T., Yumoto, N., Ichikawa, M., Kim, J.H., Saito, K., Saeki, M., Shirouzu, M., Yokoyama, S., Konagaya, A.: A computational model on the modulation of mitogen-activated protein kinase (mapk) and akt pathways in heregulin-induced erbb signalling. Biochem J 373(2), 451–463 (2003)CrossRef Hatakeyama, M., Kimura, S., Naka, T., Kawasaki, T., Yumoto, N., Ichikawa, M., Kim, J.H., Saito, K., Saeki, M., Shirouzu, M., Yokoyama, S., Konagaya, A.: A computational model on the modulation of mitogen-activated protein kinase (mapk) and akt pathways in heregulin-induced erbb signalling. Biochem J 373(2), 451–463 (2003)CrossRef
27.
Zurück zum Zitat Heineken, F.G., Tsuchiya, H.M., Aris, R.: On the mathematical status of the pseudo-steady state hypothesis of biochemical kinetics. Math Biosci 1, 95–113 (1967)CrossRef Heineken, F.G., Tsuchiya, H.M., Aris, R.: On the mathematical status of the pseudo-steady state hypothesis of biochemical kinetics. Math Biosci 1, 95–113 (1967)CrossRef
29.
Zurück zum Zitat Khoo, C.F., Hegland, M.: The total quasi-steady state assumption: its justification by singular perturbation and its application to the chemical master equation. In: G.N. Mercer, A.J. Roberts (eds.) Proceedings of the 14th Biennial Computational Techniques and Applications Conference, CTAC-2008, ANZIAM J., vol. 50, pp. C429–C443 (2008) Khoo, C.F., Hegland, M.: The total quasi-steady state assumption: its justification by singular perturbation and its application to the chemical master equation. In: G.N. Mercer, A.J. Roberts (eds.) Proceedings of the 14th Biennial Computational Techniques and Applications Conference, CTAC-2008, ANZIAM J., vol. 50, pp. C429–C443 (2008)
30.
31.
32.
Zurück zum Zitat Kwang-Hyun, C., Sung-Young, S., Hyun-Woo, K., Wolkenhauer, O., McFerran, B., Kolch, W.: Mathematical modeling of the influence of rkip on the erk signaling pathway. In: Priami, C. (ed.) Computational methods in systems biology, pp. 127–141. Springer, Berlin Heidelberg (2003)CrossRef Kwang-Hyun, C., Sung-Young, S., Hyun-Woo, K., Wolkenhauer, O., McFerran, B., Kolch, W.: Mathematical modeling of the influence of rkip on the erk signaling pathway. In: Priami, C. (ed.) Computational methods in systems biology, pp. 127–141. Springer, Berlin Heidelberg (2003)CrossRef
33.
Zurück zum Zitat Laidler, K.J.: Theory of the transient phase in kinetics, with special reference to enzyme systems. Can J Chem 33, 1614–1624 (1955)CrossRef Laidler, K.J.: Theory of the transient phase in kinetics, with special reference to enzyme systems. Can J Chem 33, 1614–1624 (1955)CrossRef
34.
Zurück zum Zitat Lin, C.C., Segel, L.A.: Mathematics applied to deterministic problems in the natural sciences, vol. 1. SIAM, Philadelphia (1988) Lin, C.C., Segel, L.A.: Mathematics applied to deterministic problems in the natural sciences, vol. 1. SIAM, Philadelphia (1988)
35.
Zurück zum Zitat Lu, Y., Lekszycki, T.: A novel coupled system of non-local integro-differential equations modelling young’s modulus evolution, nutrients’ supply and consumption during bone fracture healing. Zeit Angew Math Phys 67(5), 111 (2016)MathSciNetMATHCrossRef Lu, Y., Lekszycki, T.: A novel coupled system of non-local integro-differential equations modelling young’s modulus evolution, nutrients’ supply and consumption during bone fracture healing. Zeit Angew Math Phys 67(5), 111 (2016)MathSciNetMATHCrossRef
36.
Zurück zum Zitat Lu, Y., Lekszycki, T.: Modelling of bone fracture healing: influence of gap size and angiogenesis into bioresorbable bone substitute. Math Mech Solids 22(10), 1997–2010 (2017)MathSciNetMATHCrossRef Lu, Y., Lekszycki, T.: Modelling of bone fracture healing: influence of gap size and angiogenesis into bioresorbable bone substitute. Math Mech Solids 22(10), 1997–2010 (2017)MathSciNetMATHCrossRef
37.
Zurück zum Zitat Lu, Y., Lekszycki, T.: New description of gradual substitution of graft by bone tissue including biomechanical and structural effects, nutrients supply and consumption. Contin Mech Thermodyn 30(5), 995–1009 (2018)ADSMathSciNetMATHCrossRef Lu, Y., Lekszycki, T.: New description of gradual substitution of graft by bone tissue including biomechanical and structural effects, nutrients supply and consumption. Contin Mech Thermodyn 30(5), 995–1009 (2018)ADSMathSciNetMATHCrossRef
38.
Zurück zum Zitat MacNamara, S., Burrage, K.: Krylov and steady-state techniques for the solution of the chemical master equation for the mitogen-activated protein kinase cascade. Numer Algorithm 51(3), 281–307 (2009)ADSMathSciNetMATHCrossRef MacNamara, S., Burrage, K.: Krylov and steady-state techniques for the solution of the chemical master equation for the mitogen-activated protein kinase cascade. Numer Algorithm 51(3), 281–307 (2009)ADSMathSciNetMATHCrossRef
40.
41.
Zurück zum Zitat Nayfeh, A.: Perturbation Methods. Wiley, NJ (2004) Nayfeh, A.: Perturbation Methods. Wiley, NJ (2004)
42.
Zurück zum Zitat Nguyen, A.H., Fraser, S.J.: Geometrical picture of reaction in enzyme kinetics. J Chem Phys 91(1), 186–193 (1989)ADSCrossRef Nguyen, A.H., Fraser, S.J.: Geometrical picture of reaction in enzyme kinetics. J Chem Phys 91(1), 186–193 (1989)ADSCrossRef
43.
Zurück zum Zitat Palsson, B.O.: On the dynamics of the irreversible Michaelis-Menten reaction mechanism. Chem Eng Sci 42(3), 447–458 (1987)CrossRef Palsson, B.O.: On the dynamics of the irreversible Michaelis-Menten reaction mechanism. Chem Eng Sci 42(3), 447–458 (1987)CrossRef
44.
Zurück zum Zitat Palsson, B.O., Lightfoot, E.N.: Mathematical modelling of dynamics and control in metabolic networks. i. on Michaelis-Menten kinetics. J Theor Biol 111(2), 273–302 (1984)MathSciNetCrossRef Palsson, B.O., Lightfoot, E.N.: Mathematical modelling of dynamics and control in metabolic networks. i. on Michaelis-Menten kinetics. J Theor Biol 111(2), 273–302 (1984)MathSciNetCrossRef
45.
Zurück zum Zitat Palsson, B.O., Palsson, H., Lightfoot, E.N.: Mathematical modelling of dynamics and control in metabolic networks. iii. linear reaction sequences. J Theor Biol 113(2), 231–259 (1985)MathSciNetCrossRef Palsson, B.O., Palsson, H., Lightfoot, E.N.: Mathematical modelling of dynamics and control in metabolic networks. iii. linear reaction sequences. J Theor Biol 113(2), 231–259 (1985)MathSciNetCrossRef
46.
Zurück zum Zitat Pedersen, M.G., Bersani, A.M.: Introducing total substrates simplifies theoretical analysis at non-negligible enzyme concentrations: pseudo first-order kinetics and the loss of zero-order ultrasensitivity. J Math Biol 60(2), 267–283 (2010)MathSciNetMATHCrossRef Pedersen, M.G., Bersani, A.M.: Introducing total substrates simplifies theoretical analysis at non-negligible enzyme concentrations: pseudo first-order kinetics and the loss of zero-order ultrasensitivity. J Math Biol 60(2), 267–283 (2010)MathSciNetMATHCrossRef
47.
Zurück zum Zitat Pedersen, M.G., Bersani, A.M., Bersani, E.: The total quasi-steady-state approximation for fully competitive enzyme reactions. Bull Math Biol 69(1), 433–457 (2006)MATHCrossRef Pedersen, M.G., Bersani, A.M., Bersani, E.: The total quasi-steady-state approximation for fully competitive enzyme reactions. Bull Math Biol 69(1), 433–457 (2006)MATHCrossRef
48.
Zurück zum Zitat Pedersen, M.G., Bersani, A.M., Bersani, E.: Quasi steady-state approximations in complex intracellular signal transduction networks - a word of caution. J Math Chem 43(4), 1318–1344 (2008)MathSciNetMATHCrossRef Pedersen, M.G., Bersani, A.M., Bersani, E.: Quasi steady-state approximations in complex intracellular signal transduction networks - a word of caution. J Math Chem 43(4), 1318–1344 (2008)MathSciNetMATHCrossRef
49.
Zurück zum Zitat Pedersen, M.G., Bersani, A.M., Bersani, E., Cortese, G.: The total quasi-steady-state approximation for complex enzyme reactions. Math Computer Simul 79(4), 1010–1019 (2008)MathSciNetMATHCrossRef Pedersen, M.G., Bersani, A.M., Bersani, E., Cortese, G.: The total quasi-steady-state approximation for complex enzyme reactions. Math Computer Simul 79(4), 1010–1019 (2008)MathSciNetMATHCrossRef
50.
51.
Zurück zum Zitat Roberts, A.J.: Model emergent dynamics in complex systems. SIAM, Philadelphia (2015)MATH Roberts, A.J.: Model emergent dynamics in complex systems. SIAM, Philadelphia (2015)MATH
52.
Zurück zum Zitat Sabouri-Ghomi, M., Ciliberto, A., Kar, S., Novak, B., Tyson, J.J.: Antagonism and bistability in protein interaction networks. J Theor Biol 250(1), 209–218 (2008)MathSciNetMATHCrossRef Sabouri-Ghomi, M., Ciliberto, A., Kar, S., Novak, B., Tyson, J.J.: Antagonism and bistability in protein interaction networks. J Theor Biol 250(1), 209–218 (2008)MathSciNetMATHCrossRef
53.
Zurück zum Zitat Schnell, S., Maini, P.: Enzyme kinetics far from the standard quasi-steady-state and equilibrium approximations. Math Computer Model 35(1–2), 137–144 (2002)MathSciNetMATHCrossRef Schnell, S., Maini, P.: Enzyme kinetics far from the standard quasi-steady-state and equilibrium approximations. Math Computer Model 35(1–2), 137–144 (2002)MathSciNetMATHCrossRef
54.
Zurück zum Zitat Segel, L.A.: Modeling dynamic phenomena in molecular and cellular biology. Cambridge University Press, Cambridge (1984)MATH Segel, L.A.: Modeling dynamic phenomena in molecular and cellular biology. Cambridge University Press, Cambridge (1984)MATH
55.
56.
57.
Zurück zum Zitat Storer, A.C., Cornish-Bowden, A.: The kinetics of coupled enzyme reactions. Biochem J 141, 205–209 (1974)CrossRef Storer, A.C., Cornish-Bowden, A.: The kinetics of coupled enzyme reactions. Biochem J 141, 205–209 (1974)CrossRef
58.
Zurück zum Zitat Tikhonov, A.: On the dependence of the solutions of differential equations on a small parameter (in russian). Mat Sb (NS) 22(2), 193–204 (1948) Tikhonov, A.: On the dependence of the solutions of differential equations on a small parameter (in russian). Mat Sb (NS) 22(2), 193–204 (1948)
59.
Zurück zum Zitat Tikhonov, A.: On a system of differential equations containing parameters (in russian). Mat Sb (NS) 27, 147–156 (1950) Tikhonov, A.: On a system of differential equations containing parameters (in russian). Mat Sb (NS) 27, 147–156 (1950)
60.
Zurück zum Zitat Tzafriri, A., Edelman, E.: The total quasi-steady-state approximation is valid for reversible enzyme kinetics. J Theor Biol 226(3), 303–313 (2004)MathSciNetMATHCrossRef Tzafriri, A., Edelman, E.: The total quasi-steady-state approximation is valid for reversible enzyme kinetics. J Theor Biol 226(3), 303–313 (2004)MathSciNetMATHCrossRef
61.
Zurück zum Zitat Tzafriri, A.R., Edelman, E.R.: Quasi-steady-state kinetics at enzyme and substrate concentrations in excess of the Michaelis-Menten constant. J Theor Biol 245(4), 737–748 (2007)MathSciNetMATHCrossRef Tzafriri, A.R., Edelman, E.R.: Quasi-steady-state kinetics at enzyme and substrate concentrations in excess of the Michaelis-Menten constant. J Theor Biol 245(4), 737–748 (2007)MathSciNetMATHCrossRef
62.
Zurück zum Zitat Udema, I.I.: Kinetic parameters from linear plot vis-á-vis condition for validity of various quasi steady state approximations. MOJ Bioorganic Org Chem 2(2), 72–81 (2018) Udema, I.I.: Kinetic parameters from linear plot vis-á-vis condition for validity of various quasi steady state approximations. MOJ Bioorganic Org Chem 2(2), 72–81 (2018)
63.
Zurück zum Zitat Udema, I.I.: Derivable equations and issues often ignored in the original Michaelis-Menten mathematical formalism. Asian J Res Biochem 7(4), 1–13 (2019) Udema, I.I.: Derivable equations and issues often ignored in the original Michaelis-Menten mathematical formalism. Asian J Res Biochem 7(4), 1–13 (2019)
64.
Zurück zum Zitat Udema, I.I.: Total enzyme-substrate complex which includes product-destined emzyme-substrate complex. Asian J Res Biochem 5(4), 1–7 (2019) Udema, I.I.: Total enzyme-substrate complex which includes product-destined emzyme-substrate complex. Asian J Res Biochem 5(4), 1–7 (2019)
65.
Zurück zum Zitat Vasil’eva, A.B.: Asymptotic behaviour of solutions to certain problems involving non-linear differential equations containing a small parameter multiplying the highest derivatives (in russian). Rus Math Surv 18(3), 13–84 (1963)MATHCrossRef Vasil’eva, A.B.: Asymptotic behaviour of solutions to certain problems involving non-linear differential equations containing a small parameter multiplying the highest derivatives (in russian). Rus Math Surv 18(3), 13–84 (1963)MATHCrossRef
66.
Zurück zum Zitat Wasow, W.: Asymptotic expansions for ordinary differential equations. Wiley, NJ (1965)MATH Wasow, W.: Asymptotic expansions for ordinary differential equations. Wiley, NJ (1965)MATH
Metadaten
Titel
Asymptotics and numerical analysis for enzymatic auxiliary reactions
verfasst von
Alberto Maria Bersani
Alessandro Borri
Maria Elisa Tosti
Publikationsdatum
02.01.2021
Verlag
Springer Berlin Heidelberg
Erschienen in
Continuum Mechanics and Thermodynamics / Ausgabe 3/2021
Print ISSN: 0935-1175
Elektronische ISSN: 1432-0959
DOI
https://doi.org/10.1007/s00161-020-00962-5

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