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2017 | OriginalPaper | Buchkapitel

Bacterial Diversity of the Boka Kotorska Bay

verfasst von : Sandra Jokanović, Aleksandra Huter, Sandi Orlić

Erschienen in: The Boka Kotorska Bay Environment

Verlag: Springer International Publishing

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Abstract

This chapter provides an overview on the results of bacterial diversity studies conducted in the Boka Kotorska Bay using flow cytometry, epifluorescence microscopy as well as CARD FISH methods. Preliminary results of bacterial communities in sediment using next generation sequencing are presented as well. The Boka Kotorska Bay represents a semi-closed basin with specific hydrographic characteristics where it is very important to investigate bacterioplankton structure and highlight their significance. Average results of heterotrophic bacteria showed that Boka Kotorska Bay during 2009 and 2010 belonged to oligotrophic area. In the course of 2011 and 2012 Kotor and Risan represented mesoeutrophic area while Tivat, Herceg Novi and Mamula belonged to oligotrophic area. Analysis of seasonal distribution of LNA and HNA groups in the area of Boka Kotorska Bay showed prevalence of the LNA bacteria during spring, summer and autumn, while prevalence of the HNA bacterial group was occurred only in winter time. Bacterioplankton abundance obtained by CARD FISH showed variations among different part of Bay. Abundance of all bacterial groups decreased going from the inner (Kotor and Risan Bay) to the outer part (Herceg Novi and Mamula). In inner part of the Bay dominated Gammaproteobacteria and Cytophaga/Flavobacter, typical chemoorganotrophs. This part of investigated area was affected by inflow of fresh waters, nutrients as well as under great influence of contamination taking account bacterial faecal indicators. Preliminary results of sediment analysis showed dominance of Proteobacteria, Firmicutes, and Actinobacteria in surface sediment layers especially Gammaproteobacteria in the most polluted sites.

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Literatur
1.
Zurück zum Zitat Sieburth JM, Smetacek V, Lenz J (1978) Pelagic ecosystem structure: heterotrophic compartments and their relationship to plankton size fractions. Limnol Oceanogr 23:1256–1263 Sieburth JM, Smetacek V, Lenz J (1978) Pelagic ecosystem structure: heterotrophic compartments and their relationship to plankton size fractions. Limnol Oceanogr 23:1256–1263
2.
Zurück zum Zitat Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci 95:6578–6583CrossRef Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci 95:6578–6583CrossRef
3.
Zurück zum Zitat Atlas RM (1984) Petroleum microbiology. MacMillan Pub. Co., New York Atlas RM (1984) Petroleum microbiology. MacMillan Pub. Co., New York
4.
Zurück zum Zitat Lachmund C, Köcher B, Manz W et al (2003) Chemical and microbiological in situ characterization of benthic communities in sediments with different contamination levels. J Soil Sediment 3(3):188–196CrossRef Lachmund C, Köcher B, Manz W et al (2003) Chemical and microbiological in situ characterization of benthic communities in sediments with different contamination levels. J Soil Sediment 3(3):188–196CrossRef
5.
Zurück zum Zitat Fuhrman JA, Hagström  (2008) Bacterial and archaeal community structure and its patterns. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, New Jersey, pp 45–90 Fuhrman JA, Hagström  (2008) Bacterial and archaeal community structure and its patterns. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, New Jersey, pp 45–90
6.
Zurück zum Zitat Davey H, Kell D (1996) Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analysis. Microbiol Rev 60:641–696 Davey H, Kell D (1996) Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analysis. Microbiol Rev 60:641–696
7.
Zurück zum Zitat Collier JL, Campbell L (1999) Flow cytometry in molecular aquatic ecology. Hydrobiologia 401:33–53CrossRef Collier JL, Campbell L (1999) Flow cytometry in molecular aquatic ecology. Hydrobiologia 401:33–53CrossRef
8.
Zurück zum Zitat Li WKW, Jellett JF, Dickie PM (1995) DNA distribution in planktonic bacteria stained with TOTO or TO-PRO. Limnol Oceanogr 40:1485–1495CrossRef Li WKW, Jellett JF, Dickie PM (1995) DNA distribution in planktonic bacteria stained with TOTO or TO-PRO. Limnol Oceanogr 40:1485–1495CrossRef
9.
Zurück zum Zitat Gasol JM, Zweifel UL, Peters F et al (1999) Significance of size and nucleic acid content heterogeneity as assessed by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol 65:4475–4483 Gasol JM, Zweifel UL, Peters F et al (1999) Significance of size and nucleic acid content heterogeneity as assessed by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol 65:4475–4483
10.
Zurück zum Zitat Pace N, Stahl D, Lane D et al (1985) Analyzing natural microbial populations by rRNA sequences. Am Soc Microbiol News 51:4–12 Pace N, Stahl D, Lane D et al (1985) Analyzing natural microbial populations by rRNA sequences. Am Soc Microbiol News 51:4–12
11.
Zurück zum Zitat Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59(1):143–169 Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59(1):143–169
12.
Zurück zum Zitat Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68(6):3094–3101CrossRef Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68(6):3094–3101CrossRef
13.
Zurück zum Zitat Azam F, Cho BC (1987) Bacterial utilization of organic matter in the sea. In: Ecology of microbial communities. Cambridge University Press, Cambridge, pp 261–281 Azam F, Cho BC (1987) Bacterial utilization of organic matter in the sea. In: Ecology of microbial communities. Cambridge University Press, Cambridge, pp 261–281
14.
Zurück zum Zitat Gasol JM, Del Giorgio PA, Duarte C (1997) Biomass distribution in marine planktonic communities. Limnol Oceanogr 42:1353–1363CrossRef Gasol JM, Del Giorgio PA, Duarte C (1997) Biomass distribution in marine planktonic communities. Limnol Oceanogr 42:1353–1363CrossRef
15.
Zurück zum Zitat Marie D, Partensky F, Jacquet S et al (1997) Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR green I. Appl Environ Microbiol 63:186–193 Marie D, Partensky F, Jacquet S et al (1997) Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR green I. Appl Environ Microbiol 63:186–193
16.
Zurück zum Zitat Jochem FJ (2001) Morphology and DNA content of bacterioplankton in the northern Gulf of Mexico: analysis by epifluorescence microscopy and flow cytometry. Aquat Microb Ecol 25:179–194CrossRef Jochem FJ (2001) Morphology and DNA content of bacterioplankton in the northern Gulf of Mexico: analysis by epifluorescence microscopy and flow cytometry. Aquat Microb Ecol 25:179–194CrossRef
17.
Zurück zum Zitat Gasol JM, Del Giorgio PA (2000) Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar 64:197–224CrossRef Gasol JM, Del Giorgio PA (2000) Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar 64:197–224CrossRef
18.
Zurück zum Zitat Zubkov MV, Fuchs BM, Burkill PH et al (2001) Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl Environ Microbiol 67:5210–5218CrossRef Zubkov MV, Fuchs BM, Burkill PH et al (2001) Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl Environ Microbiol 67:5210–5218CrossRef
19.
Zurück zum Zitat Jochem FJ, Lavrentyev PJ, First MR (2004) Growth and grazing rates of bacteria groups with different apparent DNA content in the Gulf of Mexico. Mar Biol 145:1213–1225CrossRef Jochem FJ, Lavrentyev PJ, First MR (2004) Growth and grazing rates of bacteria groups with different apparent DNA content in the Gulf of Mexico. Mar Biol 145:1213–1225CrossRef
20.
Zurück zum Zitat Longnecker K, Sherr BF, Sherr EB (2005) Activity and phylogenetic diversity of bacterial cells with high and low nucleic acid content and electron transport system activity in an upwelling ecosystem. Appl Environ Microbiol 71:7737–7749CrossRef Longnecker K, Sherr BF, Sherr EB (2005) Activity and phylogenetic diversity of bacterial cells with high and low nucleic acid content and electron transport system activity in an upwelling ecosystem. Appl Environ Microbiol 71:7737–7749CrossRef
21.
Zurück zum Zitat Button DK (1998) Nutrient uptake by microorganisms according to kinetic parameters from theory as related to cytoarchitecture. Microbiol Mol Biol Rev 62:636–645 Button DK (1998) Nutrient uptake by microorganisms according to kinetic parameters from theory as related to cytoarchitecture. Microbiol Mol Biol Rev 62:636–645
22.
Zurück zum Zitat Cotner JB, Biddanda BA (2002) Small players, large role: microbial influence on autoheterotrophic coupling and biogeochemical processes in aquatic ecosystem. Ecosystem 5:105–121CrossRef Cotner JB, Biddanda BA (2002) Small players, large role: microbial influence on autoheterotrophic coupling and biogeochemical processes in aquatic ecosystem. Ecosystem 5:105–121CrossRef
23.
Zurück zum Zitat Šantić D, Krstulović N, Šolić M et al (2013) Dynamics of prokaryotic picoplankton community in the central and southern Adriatic Sea (Croatia). Helgol Mar Res 67:471–481CrossRef Šantić D, Krstulović N, Šolić M et al (2013) Dynamics of prokaryotic picoplankton community in the central and southern Adriatic Sea (Croatia). Helgol Mar Res 67:471–481CrossRef
24.
Zurück zum Zitat Šolić M, Krstulović N, Šestanović S (2001) The role of predation, substrate supply and temperature in controlling bacterial abundance: interaction between spatial and seasonal scale. Acta Adriat 42:35–48 Šolić M, Krstulović N, Šestanović S (2001) The role of predation, substrate supply and temperature in controlling bacterial abundance: interaction between spatial and seasonal scale. Acta Adriat 42:35–48
25.
Zurück zum Zitat Redžić A, Krstulović N, Šolić M et al (2015) Dynamics of prokaryotic community in Boka Kotorska Bay (South-eastern Adriatic Sea). Acta Adriat 56(2):157–170 Redžić A, Krstulović N, Šolić M et al (2015) Dynamics of prokaryotic community in Boka Kotorska Bay (South-eastern Adriatic Sea). Acta Adriat 56(2):157–170
26.
Zurück zum Zitat Bellafiore D, Guarnierib A, Grillia F et al (2011) Study of the hydrodynamical processes in the Bokakotorska Bay with a finite element model. Dyn Atmos Oceans 52:298–321CrossRef Bellafiore D, Guarnierib A, Grillia F et al (2011) Study of the hydrodynamical processes in the Bokakotorska Bay with a finite element model. Dyn Atmos Oceans 52:298–321CrossRef
27.
Zurück zum Zitat Calvo-Díaz A, Morán XAG, Suárez LÁ (2008) Seasonality of picophytoplankton chlorophyll a and biomass in the central Cantabrian Sea, southern Bay of Biscay. J Mar Syst 72:271–281CrossRef Calvo-Díaz A, Morán XAG, Suárez LÁ (2008) Seasonality of picophytoplankton chlorophyll a and biomass in the central Cantabrian Sea, southern Bay of Biscay. J Mar Syst 72:271–281CrossRef
28.
Zurück zum Zitat Šantić D, Krstulović N (2012) Identification and characterisation of microbial populations using flow cytometry in the Adriatic Sea. In: Schmid I (ed) Flow cytometry – recent perspectives. InTech, Croatia, pp 29–42 Šantić D, Krstulović N (2012) Identification and characterisation of microbial populations using flow cytometry in the Adriatic Sea. In: Schmid I (ed) Flow cytometry – recent perspectives. InTech, Croatia, pp 29–42
29.
Zurück zum Zitat Andrade L, Gonzalez AM, Rezende CE et al (2007) Distribution of HNA and LNA bacterial groups in the Southwest Atlantic Ocean. Braz J Microbiol 38:330–336CrossRef Andrade L, Gonzalez AM, Rezende CE et al (2007) Distribution of HNA and LNA bacterial groups in the Southwest Atlantic Ocean. Braz J Microbiol 38:330–336CrossRef
30.
Zurück zum Zitat Morán XAG, Bode A, Suárez LÁ et al (2007) Assessing the relevance of nucleic acid content as an indicator of marine bacterial activity. Aquat Microb Ecol 46:141–152CrossRef Morán XAG, Bode A, Suárez LÁ et al (2007) Assessing the relevance of nucleic acid content as an indicator of marine bacterial activity. Aquat Microb Ecol 46:141–152CrossRef
31.
Zurück zum Zitat Šolić M, Krstulović N, Vilibić I et al (2009) Variability in the bottom-up and top-down control of bacteria on trophic and temporal scale in the middle Adriatic Sea. Aquat Microb Ecol 58:15–19CrossRef Šolić M, Krstulović N, Vilibić I et al (2009) Variability in the bottom-up and top-down control of bacteria on trophic and temporal scale in the middle Adriatic Sea. Aquat Microb Ecol 58:15–19CrossRef
32.
Zurück zum Zitat Šantić D (2010) Distribution and activity of prokaryotic microorganisms in middle and southern Adriatic Sea. Dissertation, University of Zagreb (in Croatian) Šantić D (2010) Distribution and activity of prokaryotic microorganisms in middle and southern Adriatic Sea. Dissertation, University of Zagreb (in Croatian)
33.
Zurück zum Zitat Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25:943–948CrossRef Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25:943–948CrossRef
34.
Zurück zum Zitat Marković S (2014) Estimation number of bacterial communities in Boka Kotorska Bay by CARD FISH method and epifluorescence microscopy. Dissertation, University of Montenegro (in Montenegrin) Marković S (2014) Estimation number of bacterial communities in Boka Kotorska Bay by CARD FISH method and epifluorescence microscopy. Dissertation, University of Montenegro (in Montenegrin)
35.
Zurück zum Zitat Marković S, Paliaga P, Kljaić Z et al (2013) Identification and quantification of microbial community by CARD FISH method in Boka Kotorska Bay. Stud Mar 26(1):83–98 Marković S, Paliaga P, Kljaić Z et al (2013) Identification and quantification of microbial community by CARD FISH method in Boka Kotorska Bay. Stud Mar 26(1):83–98
36.
Zurück zum Zitat Drakulović D, Vuksanović N, Joksimović D (2011) Dynamics of phytoplankton in Bokakotorska Bay. Stud Mar 25(1):1–20 Drakulović D, Vuksanović N, Joksimović D (2011) Dynamics of phytoplankton in Bokakotorska Bay. Stud Mar 25(1):1–20
37.
Zurück zum Zitat Azam F, Smith DC (1991) Bacterial influence on the variability in the oceans biogeochemical state: a mechanistic view. In: Demers S (ed) Particles analyses in oceanography. Ecological science, vol 27. Springer, Berlin, pp 213–236 Azam F, Smith DC (1991) Bacterial influence on the variability in the oceans biogeochemical state: a mechanistic view. In: Demers S (ed) Particles analyses in oceanography. Ecological science, vol 27. Springer, Berlin, pp 213–236
38.
Zurück zum Zitat Jardillier L, Basset M, Domaizon I et al (2004) Bottom-up and top-down control of bacterial community composition in the euphotic zone of a reservoir. Aquat Microb Ecol 35:259–273CrossRef Jardillier L, Basset M, Domaizon I et al (2004) Bottom-up and top-down control of bacterial community composition in the euphotic zone of a reservoir. Aquat Microb Ecol 35:259–273CrossRef
39.
Zurück zum Zitat Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65(8):3721–2726 Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65(8):3721–2726
40.
Zurück zum Zitat Šantić D, Krstulović N, Šolić M (2007) Comparison of flow cytometric an epifluorescent counting methods for marine heterotrophic bacteria. Acta Adriatic 48:107–114 Šantić D, Krstulović N, Šolić M (2007) Comparison of flow cytometric an epifluorescent counting methods for marine heterotrophic bacteria. Acta Adriatic 48:107–114
41.
Zurück zum Zitat Fuks DI, Ivančić I, Najdek M et al (2012) Changes in the planktonic community structure related to trophic conditions: the case study of the northern Adriatic Sea. J Mar Syst 96–97:95–102CrossRef Fuks DI, Ivančić I, Najdek M et al (2012) Changes in the planktonic community structure related to trophic conditions: the case study of the northern Adriatic Sea. J Mar Syst 96–97:95–102CrossRef
42.
Zurück zum Zitat Jørgensen NOG (1987) Free amino acid in lakes: concentrations and assimilation rates in relation to phytoplankton and bacteria production. Limnol Oceanogr 32:97–111CrossRef Jørgensen NOG (1987) Free amino acid in lakes: concentrations and assimilation rates in relation to phytoplankton and bacteria production. Limnol Oceanogr 32:97–111CrossRef
43.
Zurück zum Zitat Keil RG, Kirchman DL (1991) Contribution energetics of a polluted stream. Limnol Oceanogr 12:27–33 Keil RG, Kirchman DL (1991) Contribution energetics of a polluted stream. Limnol Oceanogr 12:27–33
44.
Zurück zum Zitat Toolan T, Wehr JD, Findlay S (1991) Inorganic phosphorus stimulation of bacterioplankton production in a meso-eutrophic lake. Appl Environ Microbiol 57:2074–2078 Toolan T, Wehr JD, Findlay S (1991) Inorganic phosphorus stimulation of bacterioplankton production in a meso-eutrophic lake. Appl Environ Microbiol 57:2074–2078
45.
Zurück zum Zitat Munn C (2011) Marine microbiology, ecology and applications. Garland Science, New York and London Munn C (2011) Marine microbiology, ecology and applications. Garland Science, New York and London
46.
Zurück zum Zitat Amann R, Krumholz L, Stahl A (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic and environmental studies in microbiology. J Bacteriol 172(2):762–770CrossRef Amann R, Krumholz L, Stahl A (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic and environmental studies in microbiology. J Bacteriol 172(2):762–770CrossRef
47.
Zurück zum Zitat Korlević M (2015) In-depth analysis of the Adriatic Sea bacterial diversity. Dissertation, University of Zagreb (in Croatian) Korlević M (2015) In-depth analysis of the Adriatic Sea bacterial diversity. Dissertation, University of Zagreb (in Croatian)
48.
Zurück zum Zitat Manti A, Boi P, Semprucci F et al (2012) Picoplankton community composition by CARD FISH and flow cytometric techniques: a preliminary study in Central Adriatic Sea water. Int J Oceanogr doi:10.1155/2012/909718 Manti A, Boi P, Semprucci F et al (2012) Picoplankton community composition by CARD FISH and flow cytometric techniques: a preliminary study in Central Adriatic Sea water. Int J Oceanogr doi:10.​1155/​2012/​909718
49.
Zurück zum Zitat Alonso-Sáez AL, Balaqué V, Sà EL et al (2007) Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol 60(1):98–112CrossRef Alonso-Sáez AL, Balaqué V, Sà EL et al (2007) Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol 60(1):98–112CrossRef
50.
Zurück zum Zitat Crump BC, Kling GW, Bahr M (2003) Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69:2253–2268CrossRef Crump BC, Kling GW, Bahr M (2003) Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69:2253–2268CrossRef
51.
Zurück zum Zitat Worden AZ, Not F (2008) Ecology and diversity of picoeukaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, New Jersey, pp 234–295 Worden AZ, Not F (2008) Ecology and diversity of picoeukaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, New Jersey, pp 234–295
52.
Zurück zum Zitat Schattenhofer M, Fuchs BM, Amann R et al (2009) Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ Microbiol 11(8):2078–2093CrossRef Schattenhofer M, Fuchs BM, Amann R et al (2009) Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ Microbiol 11(8):2078–2093CrossRef
53.
Zurück zum Zitat Mary I, Cummings DG, Zubkov MV et al (2006) Seasonal dynamics of bacterioplankton community structure at the coastal station in the western English channel. Aquat Microb Ecol 42:119–126CrossRef Mary I, Cummings DG, Zubkov MV et al (2006) Seasonal dynamics of bacterioplankton community structure at the coastal station in the western English channel. Aquat Microb Ecol 42:119–126CrossRef
54.
Zurück zum Zitat Lancelot C (1983) Factors affecting phytoplankton extracellular release in the Southern Bight of the North Sea. Mar Ecol Prog Ser 12:115–121CrossRef Lancelot C (1983) Factors affecting phytoplankton extracellular release in the Southern Bight of the North Sea. Mar Ecol Prog Ser 12:115–121CrossRef
55.
Zurück zum Zitat Fandino LB, Reimann L, Steward GF et al (2005) Population dynamics of Cytophaga-Flavobacteria during marine phytoplankton blooms analyzed by real-time quantitative PCR. Aquat Microb Ecol 40:251–257CrossRef Fandino LB, Reimann L, Steward GF et al (2005) Population dynamics of Cytophaga-Flavobacteria during marine phytoplankton blooms analyzed by real-time quantitative PCR. Aquat Microb Ecol 40:251–257CrossRef
56.
Zurück zum Zitat Mardis ER (2008) Next-generation DNA methods. Ann Rev Genomics Hum Genet 9:387–402CrossRef Mardis ER (2008) Next-generation DNA methods. Ann Rev Genomics Hum Genet 9:387–402CrossRef
57.
Zurück zum Zitat Harayama S, Yuki K, Akihiro H (2004) Microbial communities in oil-contaminated seawater. Curr Opin Biotechnol 15(3):205–214CrossRef Harayama S, Yuki K, Akihiro H (2004) Microbial communities in oil-contaminated seawater. Curr Opin Biotechnol 15(3):205–214CrossRef
58.
Zurück zum Zitat Wobus A, Bleul C, Maassen S et al (2003) Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol Ecol 46(3):331–347CrossRef Wobus A, Bleul C, Maassen S et al (2003) Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol Ecol 46(3):331–347CrossRef
59.
Zurück zum Zitat De Flaun MF, Mayer LM (1983) Relationships between bacteria and grain surfaces in intertidal sediments. Limnol Oceanogr 28:873–881CrossRef De Flaun MF, Mayer LM (1983) Relationships between bacteria and grain surfaces in intertidal sediments. Limnol Oceanogr 28:873–881CrossRef
60.
Zurück zum Zitat Edlund A (2007) Microbial diversity in Baltic Sea sediments. Dissertation, Swedish University of Agricultural Sciences Edlund A (2007) Microbial diversity in Baltic Sea sediments. Dissertation, Swedish University of Agricultural Sciences
61.
Zurück zum Zitat Amer RA, Fattah YRA (2014) Hydrocarbonoclastic marine bacteria in Mediterranean Sea, El-Max, Egypt: isolation, identification and site characterization. Jökull J 64(4):223–249 Amer RA, Fattah YRA (2014) Hydrocarbonoclastic marine bacteria in Mediterranean Sea, El-Max, Egypt: isolation, identification and site characterization. Jökull J 64(4):223–249
62.
Zurück zum Zitat Polymenakou PN, Bertilsson S, Tselepides A et al (2005) Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries. Microb Ecol 50(3):447–462CrossRef Polymenakou PN, Bertilsson S, Tselepides A et al (2005) Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries. Microb Ecol 50(3):447–462CrossRef
63.
Zurück zum Zitat Giovanelli D (2013) Microbial life in extreme environments. Dissertation, University of Napoli Giovanelli D (2013) Microbial life in extreme environments. Dissertation, University of Napoli
64.
Zurück zum Zitat Krstulović N, Šolić M (2006) Microbiology of the sea. Institute of Oceanography and Fisheries, Split (in Croatian) Krstulović N, Šolić M (2006) Microbiology of the sea. Institute of Oceanography and Fisheries, Split (in Croatian)
65.
Zurück zum Zitat Kljajić Z, Marković S, Žmukić J et al (2012) Montenegrin coastal sea monitoring. In: Conference proceedings “Water 2012”, 41st annual conference of the Serbian Water Pollution Control Society, Divčibare, 5–7 June 2012 (in Serbian) Kljajić Z, Marković S, Žmukić J et al (2012) Montenegrin coastal sea monitoring. In: Conference proceedings “Water 2012”, 41st annual conference of the Serbian Water Pollution Control Society, Divčibare, 5–7 June 2012 (in Serbian)
66.
Zurück zum Zitat Stjepčević B (1983) Quantitative variation of coliforms and heterotrophic bacteria in Kotor and Risan Bay. Stud Mar 13–14(1):142–148 (in Serbian) Stjepčević B (1983) Quantitative variation of coliforms and heterotrophic bacteria in Kotor and Risan Bay. Stud Mar 13–14(1):142–148 (in Serbian)
67.
Zurück zum Zitat Stjepčević B, Ivanović A (2001) Some indicators of anthropogenic pollution of the sea water in Kotor and Risan Bays. Stud Mar 23(1):65–70 Stjepčević B, Ivanović A (2001) Some indicators of anthropogenic pollution of the sea water in Kotor and Risan Bays. Stud Mar 23(1):65–70
68.
Zurück zum Zitat Huter A (2012) The ecological status of mussel farms (Mytilus galloprovicialis) in Kotor–Risan Bay during summer months of 2010 and 2011. In: Conference proceedings “Water 2012”, 41st annual conference of the Serbian Water Pollution Control Society, Divčibare, 5–7 June 2012 (in Serbian) Huter A (2012) The ecological status of mussel farms (Mytilus galloprovicialis) in Kotor–Risan Bay during summer months of 2010 and 2011. In: Conference proceedings “Water 2012”, 41st annual conference of the Serbian Water Pollution Control Society, Divčibare, 5–7 June 2012 (in Serbian)
69.
Zurück zum Zitat Marković S, Mitrić M, Martinović R et al (2015) Monitoring of seawater in the Bokakotorska Bay. In: Conference proceedings “Water 2015”, 44th annual conference of the Serbian Water Pollution Control Society, Kopaonik, 2–4 June 2015 (in Serbian) Marković S, Mitrić M, Martinović R et al (2015) Monitoring of seawater in the Bokakotorska Bay. In: Conference proceedings “Water 2015”, 44th annual conference of the Serbian Water Pollution Control Society, Kopaonik, 2–4 June 2015 (in Serbian)
70.
Zurück zum Zitat Marković S, Kolarević S, Vuković-Gačić B et al (2012) Influence of waste water on seawater and sediment quality in the Bokakotorska Bay. In: Conference proceedings “Water 2012”, 41st annual conference of the Serbian Water Pollution Control Society, Divčibare, 5–7 June 2012 (in Serbian) Marković S, Kolarević S, Vuković-Gačić B et al (2012) Influence of waste water on seawater and sediment quality in the Bokakotorska Bay. In: Conference proceedings “Water 2012”, 41st annual conference of the Serbian Water Pollution Control Society, Divčibare, 5–7 June 2012 (in Serbian)
Metadaten
Titel
Bacterial Diversity of the Boka Kotorska Bay
verfasst von
Sandra Jokanović
Aleksandra Huter
Sandi Orlić
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/698_2016_32