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2014 | OriginalPaper | Buchkapitel

Biofilm Architecture

verfasst von : Jochen J. Schuster, Gerard H. Markx

Erschienen in: Productive Biofilms

Verlag: Springer International Publishing

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Abstract

Microbial biofilms are complex self-organized communities of microbial cells that provide protective environments for the cells that inhabit the biofilm, enabling them to respond efficiently to challenges. The enhanced resistance and altered metabolism of the cells in the biofilm makes biofilms potentially very useful in chemical production processes, including the production of pharmaceuticals and biofuels. Synthetic biofilms in which the composition and architecture of the biofilm is controlled by the designer could help in harnessing this potential. In this chapter we discuss biofilm architecture, how it can be created by natural or artificial means, and how it affects biofilm function.

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Vorheriges Kapitel Modeling of Biofilm Systems: A Review

Nächstes Kapitel Engineered Cell–Cell Communication and Its Applications

Wimpenny JWT (2003) Togetherness—not just a biofilm thing. In: McBain A, Allison D, Brading M, Rickard AH, Verran J, Walker J (eds) Biofilm communities: order from chaos? BioLine, Cardiff, pp 319–340

Marsh PD (2003) Plaque as a biofilm: pharmacological principles of drug delivery and action in the sub- and supragingival environment. Oral Dis 9:16–22CrossRef

Francolini I, Donelli G (2010) Prevention and control of biofilm-based medical-device-related infections. FEMS Immunol Med Microbiol 59:227–238

Fayard EH (2008) Case studies: plant performance improvements through the use of innovative condenser cleaning technology and leak detection inspection. Proceedings of the ASME Power Conference 2008, New York

Huq A, Whitehouse CA, Grim CJ, Alam M, Colwell RR (2008) Biofilms in water, its role and impact in human disease transmission. Curr Opin Biotechnol 19:244–247CrossRef

Winkler M (1981) Nitrogen and phosphor removal. In: Biological treatment of wastewater, Ellis Horwood Ltd, Chichester, pp 226–234

Junter GA, Jouenne T (2004) Immobilized viable microbial cells: from the process to the proteome em leader or the cart before the horse. Biotechnol Adv 22:633–658CrossRef

Boone DR, Whitman WB, Rouviere P (1993) Diversity and taxonomy of methanogens, In: Ferry JG (ed) Methanogenesis, Chapman & Hall, London, p 35

Doelle HW (1975) Anaerobic respiration. In: Bacterial metabolism, 2nd edn. Academic Press, London, pp 157–158

10.

Qureshi N, Annous BA, Ezeji TE, Karcher P, Maddox IS (2005) Biofilm reactors for industrial bioconversion processes: employing potential of enhanced reaction rates. Microb Cell Fact 4:24. doi: 10.1186/1475-2859-4-24

11.

Davies D (2003) Understanding biofilm resistance to antibacterial agents. Nat Rev Drug Discov 2:114–122CrossRef

12.

Rosche B, Li XZ, Hauer B, Schmid A, Buehler K (2009) Microbial biofilms: a concept for industrial catalysis? Trends Biotechnol 27:636–643CrossRef

13.

Shong J, Jimenez Diaz MR, Collins CH (2012) Towards synthetic microbial consortia for bioprocessing. Curr Opin Biotechnol 23:798–802CrossRef

14.

Halan B, Buehler K, Schmid A (2012) Biofilms as living catalysts in continuous chemical syntheses. Trends Biotechnol 30:453–465CrossRef

15.

Beyenal H, Lewandowski Z, Harkin G (2004) Quantifying biofilm structure: facts and fiction. Biofouling 20:1–23CrossRef

16.

Shrout JD, Tolker-Nielsen T, Givskov M, Parsek MR (2011) The contribution of cell–cell signaling and motility to bacterial biofilm formation. MRS Bulletin 36:367–373CrossRef

17.

Bridier A, Dubois-Brisonnet F, Boubetra A, Thomas V, Briandet R (2010) The biofilm architecture of sixty opportunistic pathogens deciphered using a high throughput CLSM Method. J Microbiol Meth 82:64–70CrossRef

18.

Halan B, Schmid A, Buehler K (2011) Real-time solvent tolerance analysis of Pseudomonas sp strain LB120 delta C catalytic biofilms. Appl Environ Microb 77:1563–1571CrossRef

19.

Klausen M, Heydorn A, Ragas P, Lambertsen L, Aaes-Jorgensen A, Molin S, Tolker-Nielsen T (2003) Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutants. Mol Microbiol 48:1511–1524CrossRef

20.

Shapiro JA (1998) Thinking about bacterial populations as multicellular organisms. Annu Rev Microbiol 52:81–104CrossRef

21.

O’Toole G, Kaplan HB, Kolter R (2000) Biofilm formation as microbial development. Annu Rev Microbiol 54:49–79CrossRef

22.

Stewart PS, Franklin MJ (2008) Physiological heterogeneity in biofilms. Nature Rev Microbiol 6:199–210CrossRef

23.

Stoodley P, Sauer K, Davies DG, Costerton JW (2002) Biofilms as complex differentiated communities. Ann Rev Microbiol 56:187–209CrossRef

24.

Hall-Stoodley L, Stoodley P (2002) Developmental regulation of microbial biofilms. Curr Opin Biotechnol 13:228–233CrossRef

25.

Asally M, Kittisopikul M, Rue P, Du Y, Hu Z, Cagatay T, Robinson AB, Lu H, Garcia-Ojalvo J, Suel GM (2012) Localized cell death focuses mechanical forces during 3D patterning in a biofilm. Proc Natl Acad Sci USA 109:1–6

26.

Rudge JT, Steiner PJ, Phillips A, Haselhof J (2012) Computational modeling of synthetic microbial biofilms. ACS Synth Biol 1:345–352CrossRef

27.

Markx GH, Andrews JS, Mason VP (2004) Towards microbial tissue engineering? Trends Biotechnol 22:417–422CrossRef

28.

Matsushita M, Fukijama H (1990) Diffusion-limited growth in bacterial colony formation. Physica 168:498–506CrossRef

29.

Stewart PS (2003) Diffusion in biofilms. J Bacteriol 185:1485–1491CrossRef

30.

Sauer K, Camper A, Ehrlich G, Costerton J, Davies D (2002) Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm. J Bacteriol 184:1140–1154CrossRef

31.

Kreft JU (2003) Cooperation and competition in biofilms: an evolutionary perspective. In: McBain A, Allison D, Brading M, Rickard AH, Verran J, Walker J (eds) Biofilm communities: order from the chaos?. BioLine, Cardiff, pp 371–380

32.

Xavier JB (2011) Social interaction in synthetic and natural microbial communities. Mol Sys Biol 7:483CrossRef

33.

Ruiz LM, Valenzuela S, Castro M, Gonzalez A, Frezza M, Soulere L, Rohwerder T, Queneau Y, Doutheau A, Sand W, Jerez CA, Guiliani N (2008) AHL communication is a widespread phenomenon in biomining bacteria and seems to be involved in mineral-adhesion efficiency. Hydrometallurgy 94:133–137CrossRef

34.

Connell JL, Wessel AK, Parsek MR, Ellington AD, Whiteley M, Shear JB (2010) Probing prokaryotic social behaviors with bacterial “lobster traps”. MBio 1:1–8CrossRef

35.

Mason VP, Markx GH, Thompson IP, Andrews JS, Manefield M (2005) Colonial architecture in mixed species assemblages affects AHL mediated gene expression. FEMS Microbiol Lett 244:121–127CrossRef

36.

Schuster M, Lostroh CP, Ogi T, Greenber EP (2003) Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis. J Bacteriol 185:2066–2079CrossRef

37.

Decho AW, Norman RS, Visscher PT (2010) Quorum sensing in natural environments: emerging views from microbial mats. Trends Microbiol 18:73–80CrossRef

38.

Platt TG, Fuqua C (2010) What’s in a name? The semantics of quorum sensing. Trends Microbiol 18:383–387CrossRef

39.

Sanchez Z, Tani A, Suzuki N, Kariyama R, Kuman H, Kimbara K (2012) Assessment of change in biofilm architecture by nutrient concentration using a multichannel microdevice flow system. J Biosci Bioeng doi:10.1016/j.jbiosc.2012.09.018

40.

Bester E, Kroukamp O, Hausner M, Edwards EA, Wolfaardt GM (2010) Biofilm form and function: carbon availability affects biofilm architecture, metabolic activity and planktonic cell yield. J Appl Microbiol 110:387–398CrossRef

41.

Zhao C, Burchardt M, Brinkhoff T, Beardsley C, Simon M, Wittstock G (2010) Microfabrication of patterns of adherent marine bacterium Phaeobacter inhibens using soft lithography and scanning probe lithography. Langmuir 26:8641–8647CrossRef

42.

Stoodley P, Boyle JD, DeBeer D, Lappin-Scott HM (1999) Evolving perspectives of biofilm structure. Biofouling 14:75–90CrossRef

43.

Bridier A, Le Coq D, Dubois-Brissonet F, Thomas V, Aymerich S, Briandet R (2011) The spatial architecture of Bacillus subtilis biofilms deciphered using a surface associated model and in situ imaging. PLoS One 6:e1677CrossRef

44.

Kwok WK, Picioreanu C, Ong SL, van Loosdrecht MCM, Ng WJ, Heijnen JJ (1998) Influence of biomass production and detachment forces on biofilm structures in a biofilm airlift suspension reactor. Biotechnol Bioeng 58:400–407CrossRef

45.

Kirisits MJ, Margolis JJ, Purevdorj-Gage BL, Vaughan B, Chopp DL, Stoodley P, Parsek MR (2007) Influence of the hydrodynamic environment on quorum sensing in Pseudomonas aeruginosa biofilms. J Bacteriol 189:8357–8360CrossRef

46.

Mah TFC, O’Toole GA (2001) Mechanisms of biofilm resistance to antimicrobial agents. Trends Microbiol 9:34–39CrossRef

47.

Lewis K (2008) Multidrug tolerance of biofilms and persister cells. Curr Top Microbiol Immunol 322:107–131

48.

Stewart PS, Roe F, Rayner J, Eldins GJ, Lewandowski Z, Ochsner AU, Hassett JD (2000) Effect of catalase on hydrogen peroxide penetration into Pseudomonas aeruginosa biofilms. Appl Environ Microb 66:836–838CrossRef

49.

Field JA, Stams AJM, Kato M, Schraa G (1995) Enhanced biodegradation of aromatic pollutants in cocultures of anaerobic and aerobic bacterial consortia. Antonie van Leeuwenhoek 67:47–77CrossRef

50.

Kim HJ, Du W, Ismagilov RF (2011) Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(II). Integr Biol 3:126–133CrossRef

51.

Lanthier M, Taratkovsky B, Villemur R, DeLuca G, Guiot SR (2002) Microstructure of anaerobic granules bioaugmented with Desulfitobacterium frappieri PCP-1. Appl Environ Microb 68:4035–4043CrossRef

52.

Cao B, Majors PD, Ahmed B, Renslow RS, Silvia CP, Shi L, Kjelleberg S, Fredrickkson JK, Beyenal H (2012) Biofilm shows spatially stratified metabolic responses to contaminant exposure. Environ Microbiol 14:2901–2910CrossRef

53.

Brune KD, Bayer TS (2012) Engineering microbial consortia to enhance biomining and bioremediation. Front Microbiol 3:203CrossRef

54.

Zuroff TR, Curtis WR (2012) Developing symbiotic consortia for lignocellulosic biofuel production. Appl Microbiol Biotechnol 93:1423–1435CrossRef

55.

Gonzalez-Gil G, Lens PNL, van Aelst A, van As H, Versprille AI, Lettinga G (2001) Cluster structure of anaerobic aggregates of an expanded granular sludge bed reactor. Appl Environ Microb 67:3683–3692CrossRef

56.

Brenner K, Arnold FH (2011) Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium. PLoS One 6:e16791CrossRef

57.

Hansen SK, Rainey PB, Haagensen JAJ, Molin S (2007) Evolution of species interactions in a biofilm community. Nature 445:533–536. doi: 10.1038/nature05514

58.

McLeod FA, Guiot SR, Costerton JW (1990) Layered structure of bacterial aggregates produced in an upflow anaerobic sludge bed and filter reactor. Appl Environ Microb 56:1598–1607

59.

Woznica A, Karcz J, Nowak A, Gmur A, Bernas T (2010) Spatial architecture of nitrifying bacteria biofilm immobilized on polyurethane foam in an automatic biodetector for water toxicity. Microsc Microanal 16:550–560CrossRef

60.

Summers ZM, Fogarty HE, Leang C, Franks AE, Malvankar NS, Lovley DR (2010) Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria. Science 330:1413–1415CrossRef

61.

Tamsir A, Tabor JJ, Voigt CA (2011) Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’. Nature 469:212–215CrossRef

62.

Lakshmanan V, Kumar AS, Bais HP (2012) The ecological significance of plant-associated biofilms. In: Lear G, Lewis GD (eds) Microbial biofilms: Current research and applications. Caister Academic Press, Portland

63.

Zhu K, Kaprelyants AS, Salina EG, Schuler M, Markx GH (2010) Construction by dielectrophoresis of microbial aggregates for the study of bacterial cell dormancy. Biomicrofluidics 4:022810-1–022810-13

64.

Foster KR, Bell T (2012) Competition, not cooperation, dominates interactions among culturable microbial species. Curr Biol 22:1845–1850CrossRef

65.

Brenner K, You L, Arnold FH (2008) Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol 26:483–489CrossRef

66.

Chuang JS (2012) Engineering multicellular traits in synthetic microbial populations. Curr Opin Chem Biol 16:370–378CrossRef

67.

Agapakis CM, Boyle PM, Silver PA (2012) Natural strategies for the spatial optimization of metabolism in synthetic biology. Nat Chem Biol 8:527–535CrossRef

68.

Wood TK, Hong SH, Ma Q (2011) Engineering biofilm formation and dispersal. Trends Biotechnol 29:87–94CrossRef

69.

Stubblefield BA, Howery KE, Islam BN, Santiago AJ, Cardenas WE, Gilbert ES (2010) Constructing multispecies biofilms with defined compositions by sequential deposition of bacteria. Appl Microbiol Biotechnol 86:1941–1946CrossRef

70.

Flickinger MC, Schottel JL, Bond DR, Aksan A, Scriven LE (2007) Painting and printing living bacteria: engineering nanoporous biocatalytic coatings to preserve microbial viability and intensify reactivity. Biotechnol Prog 23:2–17CrossRef

71.

Tsoligkas AN, Bowen J, Winn M, Goss RJM, Overton TW, Simmons MJ (2012) Characterisation of spin coated engineered Escherichia coli biofilms using atomic force microscopy. Coll Surf B: Biointerfaces 89:152–160CrossRef

72.

Elad T, Lee JH, Gu MB, Belkin S (2010) Microbial cell arrays. Adv Biochem Eng Biotechnol 117:85–108

73.

Albrecht DR, Liu Tsang V, Sah RL, Bhatia SN (2005) Photo-and electropatterning of live cellular arrays within hydrogels. Lab Chip 5:111–118CrossRef

74.

Choi WS, Ha D, Park S, Kim T (2010) Synthetic multicellular cell-to-cell communication in inkjet printed bacterial cell systems. Biomaterials 32:2500–2507CrossRef

75.

Xu T, Petridou S, Lee EH, Roth EA, Vyavahare NR, Hickman JJ, Boland T (2004) Construction of high-density bacterial colony arrays and patterns by the ink-jet method. Biotechnol Bioeng 85:29–33CrossRef

76.

Tan W, Desai TA (2004) Layer-by-layer microfluidics for biomimetic three-dimensional structures. Biomaterials 25:1355–1364CrossRef

77.

Yaguchi T, Lee S, Choi WS, Kim D, Kim T, Mitchell RJ, Takayama S (2010) Micropatterning bacterial suspensions using aqueous two phase systems. Analyst 135:2848–2852CrossRef

78.

Wiklund M, Onfelt B (2012) Ultrasonic manipulation of single cells. Methods in Molecular Biology 853:177–196CrossRef

79.

Spengler JF, Jekel M, Christensen KT, Adrian RJ, Hawkes JJ, Coakley WT (2000) Observation of yeast cell movement and aggregation in a small-scale MHz-ultrasonic standing wave field. Bioseparation 9:329–341CrossRef

80.

Evander M, Nilsson J (2012) Acoustofluidics 20: Applications in acoustic trapping. Lab Chip 12:4667–4676CrossRef

81.

Wiklund M, Radel S, Hawkes JJ (2013) Acoustofluidics 21: ultrasound-enhanced immunoassays and particle sensors. Lab Chip 13:25–39CrossRef

82.

Haruff HM, Munakata-Marr J, Marr DWM (2003) Directed bacterial surface attachment via optical trapping. Coll Surf B: Biointerfaces 27:189–195CrossRef

83.

Poortinga AT, Bos R, Busscher HJ (2000) Controlled electrophoretic deposition of bacteria to surfaces for the design of biofilms. Biotechnol Bioeng 67:117–120CrossRef

84.

Alp B, Stephens GM, Markx GH (2002) Formation of artificial, structured microbial consortia (ASMC) by dielectrophoresis. Enz Microb Technol 31:35–43CrossRef

85.

Markx GH, Alp B, McGilchrist A (2002) Electro-orientation of Schizosaccharomyces pombe in high conductivity media. J Microbiol Meth 50:55–62CrossRef

86.

Andrews JS, Mason VP, Thompson IP, Stephens GM, Markx GH (2006) Construction of artificially structured microbial consortia (ASMC) using dielectrophoresis: examining bacterial interactions via metabolic intermediates within environmental biofilms. J Microbiol Meth 64:96–106CrossRef

87.

Verduzco-Luque CE, Alp B, Stephens GM, Markx GH (2003) Construction of biofilms with defined internal architecture using dielectrophoresis and flocculation. Biotechnol Bioeng 83:39–44CrossRef

88.

Abidin ZZ, Downes L, Markx GH (2007) Large scale dielectrophoretic construction of biofilms using textile technology. Biotechnol Bioeng 96:1222–1225CrossRef

89.

Gonzalez-Ramirez CA, Andrews JS, Kookos I, Mason VP, Stephens GM, Thompson IP, Markx GH (2005) A study of metabolic interactions within artificial biofilms of consortia of Acinetobacter sp. C6 and Pseudomonas putida R1. In: McBain A, Allison D, Pratten J, Spratt D, Upton M, Verran J (eds) Biofilms: persistence and ubiquity. Biofilm Club, Manchester

90.

Song H, Payne S, Gray M, You LC (2009) Spatiotemporal modulation of biodiversity in a synthetic chemical-mediated ecosystem. Nat Chem Biol 5:929–935CrossRef

91.

Wintermute EH, Silver PA (2010) Emergent cooperation in microbial metabolism. Mol Sys Biol 6:407

92.

Kim HJ, Boedicker JQ, Choi JW, Ismagilov RF (2008) Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc Natl Acad Sci USA 105:18188–18193CrossRef

93.

Crawford RJ, Webb HK, Truong VK, Hasan J, Ivanova E (2012) Surface topographical factors influencing bacterial attachment. Adv Coll Interf Sci 179–182:142–149CrossRef

94.

Xu F, Sridharan B, Durmus NG, Wang S, Yavuz AS, Gurkan UA, Demirci U (2011) Living bacterial sacrificial porogens to engineer decellularized porous scaffolds. Plos One 6:1–12

95.

Stephanopoulos G (2012) Synthetic biology and metabolic engineering. ACS Synth Biol 1:514–525CrossRef

Titel: Biofilm Architecture
verfasst von: Jochen J. Schuster
Gerard H. Markx
Verlag: Springer International Publishing
Buch: Productive Biofilms
Print ISBN: 978-3-319-09694-0

Electronic ISBN: 978-3-319-09695-7

Copyright-Jahr: 2014
DOI: https://doi.org/10.1007/10_2013_248

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