Skip to main content

2017 | Supplement | Buchkapitel

Cell Encoding for Histopathology Image Classification

verfasst von : Xiaoshuang Shi, Fuyong Xing, Yuanpu Xie, Hai Su, Lin Yang

Erschienen in: Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Although many image analysis algorithms can achieve good performance with sufficient number of labeled images, manually labeling images by pathologists is time consuming and expensive. Meanwhile, with the development of cell detection and segmentation techniques, it is possible to classify pathology images by using cell-level information, which is crucial to grade different diseases; however, it is still very challenging to efficiently conduct cell analysis on large-scale image databases since one image often contains a large number of cells. To address these issues, in this paper, we present a novel cell-based framework that requires only a few labeled images to classify large-scale pathology ones. Specifically, we encode each cell into a set of binary codes to generate image representation using a semi-supervised hashing model, which can take advantage of both labeled and unlabeled cells. Thereafter, we map all the binary codes in one whole image into a single histogram vector and then learn a support vector machine for image classification. The proposed framework is validated on one large-scale lung cancer image dataset with two types of diseases, and it can achieve 87.88% classification accuracy on 800 test images using only 5 labeled images of each disease.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Caicedo, J.C., Cruz, A., Gonzalez, F.A.: Histopathology image classification using bag of features and kernel functions. In: Combi, C., Shahar, Y., Abu-Hanna, A. (eds.) AIME 2009. LNCS, vol. 5651, pp. 126–135. Springer, Heidelberg (2009). doi:10.1007/978-3-642-02976-9_17CrossRef Caicedo, J.C., Cruz, A., Gonzalez, F.A.: Histopathology image classification using bag of features and kernel functions. In: Combi, C., Shahar, Y., Abu-Hanna, A. (eds.) AIME 2009. LNCS, vol. 5651, pp. 126–135. Springer, Heidelberg (2009). doi:10.​1007/​978-3-642-02976-9_​17CrossRef
2.
Zurück zum Zitat Dalal, N., Triggs, B.: Histograms of oriented gradients for human detection. In: CVPR, pp. 886–893 (2005) Dalal, N., Triggs, B.: Histograms of oriented gradients for human detection. In: CVPR, pp. 886–893 (2005)
3.
Zurück zum Zitat Fan, R.E., Chang, K.W., Hsieh, C.J., Wang, X.R., Lin, C.J.: LIBLINEAR: a library for large linear classification. J. Mach. Learn. Res. 9(Aug), 1871–1874 (2008)MATH Fan, R.E., Chang, K.W., Hsieh, C.J., Wang, X.R., Lin, C.J.: LIBLINEAR: a library for large linear classification. J. Mach. Learn. Res. 9(Aug), 1871–1874 (2008)MATH
4.
Zurück zum Zitat Hou, L., Samaras, D., Kurc, T.M., Gao, Y., Davis, J.E., Saltz, J.H.: Patch-based convolutional neural network for whole slide tissue image classification. In: CVPR, pp. 2424–2433 (2016) Hou, L., Samaras, D., Kurc, T.M., Gao, Y., Davis, J.E., Saltz, J.H.: Patch-based convolutional neural network for whole slide tissue image classification. In: CVPR, pp. 2424–2433 (2016)
6.
Zurück zum Zitat Jiang, M., Zhang, S., Huang, J., Yang, L., Metaxas, D.N.: Joint kernel-based supervised hashing for scalable histopathological image analysis. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 366–373. Springer, Cham (2015). doi:10.1007/978-3-319-24574-4_44CrossRef Jiang, M., Zhang, S., Huang, J., Yang, L., Metaxas, D.N.: Joint kernel-based supervised hashing for scalable histopathological image analysis. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 366–373. Springer, Cham (2015). doi:10.​1007/​978-3-319-24574-4_​44CrossRef
7.
Zurück zum Zitat Liu, W., Wang, J., Ji, R., Jiang, Y., Chang, S.: Supervised hashing with kernels. In: CVPR, pp. 2074–2081 (2012) Liu, W., Wang, J., Ji, R., Jiang, Y., Chang, S.: Supervised hashing with kernels. In: CVPR, pp. 2074–2081 (2012)
8.
Zurück zum Zitat Lowe, D.G.: Distinctive image features from scale-invariant keypoints. Int. J. Comput. Vis. 60(2), 91–110 (2004)CrossRef Lowe, D.G.: Distinctive image features from scale-invariant keypoints. Int. J. Comput. Vis. 60(2), 91–110 (2004)CrossRef
9.
Zurück zum Zitat Mesbah, S., Conjeti, S., Kumaraswamy, A., Rautenberg, P., Navab, N., Katouzian, A.: Hashing forests for morphological search and retrieval in neuroscientific image databases. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9350, pp. 135–143. Springer, Cham (2015). doi:10.1007/978-3-319-24571-3_17CrossRef Mesbah, S., Conjeti, S., Kumaraswamy, A., Rautenberg, P., Navab, N., Katouzian, A.: Hashing forests for morphological search and retrieval in neuroscientific image databases. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9350, pp. 135–143. Springer, Cham (2015). doi:10.​1007/​978-3-319-24571-3_​17CrossRef
10.
Zurück zum Zitat Petushi, S., Garcia, F.U., Haber, M.M., Katsinis, C., Tozeren, A.: Large-scale computations on histology images reveal grade-differentiating parameters for breast cancer. Bio. Med. Comput. Med. Imag. 6(1), 1 (2006) Petushi, S., Garcia, F.U., Haber, M.M., Katsinis, C., Tozeren, A.: Large-scale computations on histology images reveal grade-differentiating parameters for breast cancer. Bio. Med. Comput. Med. Imag. 6(1), 1 (2006)
11.
Zurück zum Zitat Shah, A., Conjeti, S., Navab, N., Katouzian, A.: Deeply learnt hashing forests for content based image retrieval in prostate MR images. In: SPIE Medical Imaging, p. 978414 (2016) Shah, A., Conjeti, S., Navab, N., Katouzian, A.: Deeply learnt hashing forests for content based image retrieval in prostate MR images. In: SPIE Medical Imaging, p. 978414 (2016)
12.
Zurück zum Zitat Shen, F., Shen, C., Liu, W., Shen, H.: Supervised discrete hashing. In: CVPR, pp. 37–45 (2015) Shen, F., Shen, C., Liu, W., Shen, H.: Supervised discrete hashing. In: CVPR, pp. 37–45 (2015)
13.
Zurück zum Zitat Shi, X., Xing, F., Cai, J., Zhang, Z., Xie, Y., Yang, L.: Kernel-based supervised discrete hashing for image retrieval. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9911, pp. 419–433. Springer, Cham (2016). doi:10.1007/978-3-319-46478-7_26CrossRef Shi, X., Xing, F., Cai, J., Zhang, Z., Xie, Y., Yang, L.: Kernel-based supervised discrete hashing for image retrieval. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9911, pp. 419–433. Springer, Cham (2016). doi:10.​1007/​978-3-319-46478-7_​26CrossRef
14.
Zurück zum Zitat Shi, X., Xing, F., Xu, K., Sapkota, M., Yang, L.: Asymmetric discrete graph hashing. In: AAAI (2017) Shi, X., Xing, F., Xu, K., Sapkota, M., Yang, L.: Asymmetric discrete graph hashing. In: AAAI (2017)
15.
Zurück zum Zitat Wang, J., Kumar, S., Chang, S.: Semi-supervised hashing for large-scale search. IEEE Trans. Pattern Anal. Mach. Intell. 34(12), 2393–2406 (2012)CrossRef Wang, J., Kumar, S., Chang, S.: Semi-supervised hashing for large-scale search. IEEE Trans. Pattern Anal. Mach. Intell. 34(12), 2393–2406 (2012)CrossRef
16.
Zurück zum Zitat Xing, F., Su, H., Neltner, J., Yang, L.: Automatic Ki-67 counting using robust cell detection and online dictionary learning. IEEE Trans. Bio. Med. Eng. 61(3), 859–870 (2014)CrossRef Xing, F., Su, H., Neltner, J., Yang, L.: Automatic Ki-67 counting using robust cell detection and online dictionary learning. IEEE Trans. Bio. Med. Eng. 61(3), 859–870 (2014)CrossRef
17.
Zurück zum Zitat Yang, L., Chen, W., Meer, P., Salaru, G., Feldman, M.D., Foran, D.J.: High throughput analysis of breast cancer specimens on the grid. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007. LNCS, vol. 4791, pp. 617–625. Springer, Heidelberg (2007). doi:10.1007/978-3-540-75757-3_75CrossRef Yang, L., Chen, W., Meer, P., Salaru, G., Feldman, M.D., Foran, D.J.: High throughput analysis of breast cancer specimens on the grid. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007. LNCS, vol. 4791, pp. 617–625. Springer, Heidelberg (2007). doi:10.​1007/​978-3-540-75757-3_​75CrossRef
18.
Zurück zum Zitat Zhang, S., Metaxas, D.: Large-scale medical image analytics: recent methodologies, applications and future directions. Med. Imag. Anal. 33, 98–101 (2016)CrossRef Zhang, S., Metaxas, D.: Large-scale medical image analytics: recent methodologies, applications and future directions. Med. Imag. Anal. 33, 98–101 (2016)CrossRef
19.
Zurück zum Zitat Zhang, X., Su, H., Yang, L., Zhang, S.: Fine-grained histopathological image analysis via robust segmentation and large-scale retrieval. In: CVPR, pp. 5361–5368 (2015) Zhang, X., Su, H., Yang, L., Zhang, S.: Fine-grained histopathological image analysis via robust segmentation and large-scale retrieval. In: CVPR, pp. 5361–5368 (2015)
20.
Zurück zum Zitat Zhang, X., Su, H., Yang, L., Zhang, S.: Weighted hashing with multiple cues for cell-level analysis of histopathological images. In: Ourselin, S., Alexander, D.C., Westin, C.-F., Cardoso, M.J. (eds.) IPMI 2015. LNCS, vol. 9123, pp. 303–314. Springer, Cham (2015). doi:10.1007/978-3-319-19992-4_23CrossRef Zhang, X., Su, H., Yang, L., Zhang, S.: Weighted hashing with multiple cues for cell-level analysis of histopathological images. In: Ourselin, S., Alexander, D.C., Westin, C.-F., Cardoso, M.J. (eds.) IPMI 2015. LNCS, vol. 9123, pp. 303–314. Springer, Cham (2015). doi:10.​1007/​978-3-319-19992-4_​23CrossRef
Metadaten
Titel
Cell Encoding for Histopathology Image Classification
verfasst von
Xiaoshuang Shi
Fuyong Xing
Yuanpu Xie
Hai Su
Lin Yang
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-66185-8_4