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2018 | OriginalPaper | Buchkapitel

Design of a Flexible In Situ Framework with a Temporal Buffer for Data Processing and Visualization of Time-Varying Datasets

verfasst von : Kenji Ono, Jorji Nonaka, Hiroyuki Yoshikawa, Takeshi Nanri, Yoshiyuki Morie, Tomohiro Kawanabe, Fumiyoshi Shoji

Erschienen in: High Performance Computing

Verlag: Springer International Publishing

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Abstract

This paper presents an in situ framework focused on time-varying simulations, and uses a novel temporal buffer for storing simulation results sampled at user-defined intervals. This framework has been designed to provide flexible data processing and visualization capabilities in modern HPC operational environments composed of powerful front-end systems, for pre-and post-processing purposes, along with traditional back-end HPC systems. The temporal buffer is implemented using the functionalities provided by Open Address Space (OpAS) library, which enables asynchronous one-sided communication from outside processes to any exposed memory region on the simulator side. This buffer can store time-varying simulation results, and can be processed via in situ approaches with different proximities. We present a prototype of our framework, and code integration process with a target simulation code. The proposed in situ framework utilizes separate files to describe the initialization and execution codes, which are in the form of Python scripts. This framework also enables the runtime modification of these Python-based files, thus providing greater flexibility to the users, not only for data processing, such as visualization and analysis, but also for the simulation steering.

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Literatur
1.
Zurück zum Zitat Ayachit, U., et al.: The SENSEI generic in situ interface. In: Proceedings of the 2nd Workshop on In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization, ISAV 2016, pp. 40–44. IEEE Press, Piscataway (2016). https://doi.org/10.1109/ISAV.2016.13 Ayachit, U., et al.: The SENSEI generic in situ interface. In: Proceedings of the 2nd Workshop on In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization, ISAV 2016, pp. 40–44. IEEE Press, Piscataway (2016). https://​doi.​org/​10.​1109/​ISAV.​2016.​13
3.
Zurück zum Zitat Fareed, H., Singler, J.R.: Error Analysis of an Incremental POD Algorithm for PDE Simulation Data. ArXiv e-prints, March 2018 Fareed, H., Singler, J.R.: Error Analysis of an Incremental POD Algorithm for PDE Simulation Data. ArXiv e-prints, March 2018
7.
Zurück zum Zitat Nanri, T.: Proposal of interface for runtime memory manipulation of applications via PGAS-based communication library. In: Workshop on PGAS programming models: Experiences and Implementations, HPC Asia 2018, 31 January 2018 Nanri, T.: Proposal of interface for runtime memory manipulation of applications via PGAS-based communication library. In: Workshop on PGAS programming models: Experiences and Implementations, HPC Asia 2018, 31 January 2018
Metadaten
Titel
Design of a Flexible In Situ Framework with a Temporal Buffer for Data Processing and Visualization of Time-Varying Datasets
verfasst von
Kenji Ono
Jorji Nonaka
Hiroyuki Yoshikawa
Takeshi Nanri
Yoshiyuki Morie
Tomohiro Kawanabe
Fumiyoshi Shoji
Copyright-Jahr
2018
DOI
https://doi.org/10.1007/978-3-030-02465-9_17