Skip to main content

2021 | OriginalPaper | Buchkapitel

Double Encoder-Decoder Networks for Gastrointestinal Polyp Segmentation

verfasst von : Adrian Galdran, Gustavo Carneiro, Miguel A. González Ballester

Erschienen in: Pattern Recognition. ICPR International Workshops and Challenges

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Polyps represent an early sign of the development of Colorectal Cancer. The standard procedure for their detection consists of colonoscopic examination of the gastrointestinal tract. However, the wide range of polyp shapes and visual appearances, as well as the reduced quality of this image modality, turn their automatic identification and segmentation with computational tools into a challenging computer vision task. In this work, we present a new strategy for the delineation of gastrointestinal polyps from endoscopic images based on a direct extension of common encoder-decoder networks for semantic segmentation. In our approach, two pretrained encoder-decoder networks are sequentially stacked: the second network takes as input the concatenation of the original frame and the initial prediction generated by the first network, which acts as an attention mechanism enabling the second network to focus on interesting areas within the image, thereby improving the quality of its predictions. Quantitative evaluation carried out on several polyp segmentation databases shows that double encoder-decoder networks clearly outperform their single encoder-decoder counterparts in all cases. In addition, our best double encoder-decoder combination attains excellent segmentation accuracy and reaches state-of-the-art performance results in all the considered datasets, with a remarkable boost of accuracy on images extracted from datasets not used for training.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Fußnoten
1
All data, training/test splits, and results of other compared methods were directly downloaded from https://​github.​com/​DengPingFan/​PraNet.
 
Literatur
1.
Zurück zum Zitat Ahn, S.B., Han, D.S., Bae, J.H., Byun, T.J., Kim, J.P., Eun, C.S.: The miss rate for colorectal adenoma determined by quality-adjusted, back-to-back colonoscopies. Gut and Liver 6(1), 64–70 (2012)CrossRef Ahn, S.B., Han, D.S., Bae, J.H., Byun, T.J., Kim, J.P., Eun, C.S.: The miss rate for colorectal adenoma determined by quality-adjusted, back-to-back colonoscopies. Gut and Liver 6(1), 64–70 (2012)CrossRef
2.
Zurück zum Zitat Akbari, M., et al.: Polyp segmentation in colonoscopy images using fully convolutional network. In: 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 69–72, July 2018. ISSN: 1558–4615 Akbari, M., et al.: Polyp segmentation in colonoscopy images using fully convolutional network. In: 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 69–72, July 2018. ISSN: 1558–4615
3.
Zurück zum Zitat Badrinarayanan, V., Kendall, A., Cipolla, R.: SegNet: a deep convolutional encoder-decoder architecture for image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 39(12), 2481–2495 (2017)CrossRef Badrinarayanan, V., Kendall, A., Cipolla, R.: SegNet: a deep convolutional encoder-decoder architecture for image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 39(12), 2481–2495 (2017)CrossRef
4.
Zurück zum Zitat Bernal, J., Sánchez, J., Vilariño, F.: Towards automatic polyp detection with a polyp appearance model. Pattern Recogn. 45(9), 3166–3182 (2012)CrossRef Bernal, J., Sánchez, J., Vilariño, F.: Towards automatic polyp detection with a polyp appearance model. Pattern Recogn. 45(9), 3166–3182 (2012)CrossRef
5.
Zurück zum Zitat Bernal, J., Sánchez, F.J., Fernñndez-Esparrach, G., Gil, D., Rodríguez, C., Vilariño, F.: WM-DOVA maps for accurate polyp highlighting in colonoscopy: validation vs. saliency maps from physicians. Comput. Med. Imaging Graph. 43, 99–111 (2015)CrossRef Bernal, J., Sánchez, F.J., Fernñndez-Esparrach, G., Gil, D., Rodríguez, C., Vilariño, F.: WM-DOVA maps for accurate polyp highlighting in colonoscopy: validation vs. saliency maps from physicians. Comput. Med. Imaging Graph. 43, 99–111 (2015)CrossRef
6.
Zurück zum Zitat Bernal, J., et al.: Comparative validation of polyp detection methods in video colonoscopy: results from the MICCAI 2015 endoscopic vision challenge. IEEE Trans. Med. Imaging 36(6), 1231–1249 (2017)CrossRef Bernal, J., et al.: Comparative validation of polyp detection methods in video colonoscopy: results from the MICCAI 2015 endoscopic vision challenge. IEEE Trans. Med. Imaging 36(6), 1231–1249 (2017)CrossRef
7.
Zurück zum Zitat Carneiro, G., Pu, L.Z.C.T., Singh, R., Burt, A.: Deep learning uncertainty and confidence calibration for the five-class polyp classification from colonoscopy. Med. Image Anal. 62, 101653 (2020)CrossRef Carneiro, G., Pu, L.Z.C.T., Singh, R., Burt, A.: Deep learning uncertainty and confidence calibration for the five-class polyp classification from colonoscopy. Med. Image Anal. 62, 101653 (2020)CrossRef
8.
Zurück zum Zitat Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: DeepLab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFs. IEEE Trans. Pattern Anal. Mach. Intell. 40(4), 834–848 (2018)CrossRef Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: DeepLab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFs. IEEE Trans. Pattern Anal. Mach. Intell. 40(4), 834–848 (2018)CrossRef
9.
Zurück zum Zitat Chen, L.C., Papandreou, G., Schroff, F., Adam, H.: Rethinking atrous convolution for semantic image segmentation. arXiv:1706.05587 [cs], December 2017 Chen, L.C., Papandreou, G., Schroff, F., Adam, H.: Rethinking atrous convolution for semantic image segmentation. arXiv:​1706.​05587 [cs], December 2017
10.
Zurück zum Zitat Chen, Y., Li, J., Xiao, H., Jin, X., Yan, S., Feng, J.: Dual path networks. In: Proceedings of the 31st International Conference on Neural Information Processing Systems. NIPS 2017, pp. 4470–4478. Curran Associates Inc., Red Hook, NY, USA, December 2017 Chen, Y., Li, J., Xiao, H., Jin, X., Yan, S., Feng, J.: Dual path networks. In: Proceedings of the 31st International Conference on Neural Information Processing Systems. NIPS 2017, pp. 4470–4478. Curran Associates Inc., Red Hook, NY, USA, December 2017
13.
Zurück zum Zitat Galdran, A., Anjos, A., Dolz, J., Chakor, H., Lombaert, H., Ayed, I.B.: The little w-net that could: state-of-the-art retinal vessel segmentation with minimalistic models. arXiv:2009.01907, September 2020 Galdran, A., Anjos, A., Dolz, J., Chakor, H., Lombaert, H., Ayed, I.B.: The little w-net that could: state-of-the-art retinal vessel segmentation with minimalistic models. arXiv:​2009.​01907, September 2020
14.
Zurück zum Zitat Guo, Y., Bernal, J., Matuszewski, B.J.: Polyp segmentation with fully convolutional deep neural networks-extended evaluation study. J. Imaging 6(7), 69 (2020)CrossRef Guo, Y., Bernal, J., Matuszewski, B.J.: Polyp segmentation with fully convolutional deep neural networks-extended evaluation study. J. Imaging 6(7), 69 (2020)CrossRef
15.
Zurück zum Zitat Haggar, F.A., Boushey, R.P.: Colorectal cancer epidemiology: incidence, mortality, survival, and risk factors. Clin. Colon Rectal Surg. 22(4), 191–197 (2009)CrossRef Haggar, F.A., Boushey, R.P.: Colorectal cancer epidemiology: incidence, mortality, survival, and risk factors. Clin. Colon Rectal Surg. 22(4), 191–197 (2009)CrossRef
16.
Zurück zum Zitat He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 770–778, June 2016. ISSN: 1063–6919 He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 770–778, June 2016. ISSN: 1063–6919
17.
Zurück zum Zitat Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 2261–2269, July 2017. ISSN: 1063–6919 Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 2261–2269, July 2017. ISSN: 1063–6919
18.
Zurück zum Zitat Jha, D., Riegler, M., Johansen, D., Halvorsen, P., Johansen, H.D.: DoubleU-Net: a deep convolutional neural network for medical image segmentation. In: 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS) (2020) Jha, D., Riegler, M., Johansen, D., Halvorsen, P., Johansen, H.D.: DoubleU-Net: a deep convolutional neural network for medical image segmentation. In: 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS) (2020)
20.
Zurück zum Zitat Jha, D., Smedsrud, P.H., Riegler, M.A., Johansen, D., Lange, T.D., Halvorsen, P., Johansen, H.D.: ResUNet++: an advanced architecture for medical image segmentation. In: 2019 IEEE International Symposium on Multimedia (ISM), pp. 225–2255, December 2019 Jha, D., Smedsrud, P.H., Riegler, M.A., Johansen, D., Lange, T.D., Halvorsen, P., Johansen, H.D.: ResUNet++: an advanced architecture for medical image segmentation. In: 2019 IEEE International Symposium on Multimedia (ISM), pp. 225–2255, December 2019
21.
Zurück zum Zitat Jia, X., et al.: Automatic polyp recognition in colonoscopy images using deep learning and two-stage pyramidal feature prediction. IEEE Trans. Autom. Sci. Eng. 17(3), 1570–1584 (2020) Jia, X., et al.: Automatic polyp recognition in colonoscopy images using deep learning and two-stage pyramidal feature prediction. IEEE Trans. Autom. Sci. Eng. 17(3), 1570–1584 (2020)
22.
Zurück zum Zitat Kang, J., Gwak, J.: Ensemble of instance segmentation models for polyp segmentation in colonoscopy images. IEEE Access 7, 26440–26447 (2019)CrossRef Kang, J., Gwak, J.: Ensemble of instance segmentation models for polyp segmentation in colonoscopy images. IEEE Access 7, 26440–26447 (2019)CrossRef
23.
Zurück zum Zitat Li, L., Verma, M., Nakashima, Y., Nagahara, H., Kawasaki, R.: IterNet: retinal image segmentation utilizing structural redundancy in vessel networks. In: The IEEE Winter Conference on Applications of Computer Vision (WACV), March 2020 Li, L., Verma, M., Nakashima, Y., Nagahara, H., Kawasaki, R.: IterNet: retinal image segmentation utilizing structural redundancy in vessel networks. In: The IEEE Winter Conference on Applications of Computer Vision (WACV), March 2020
24.
Zurück zum Zitat Lin, T.Y., Dollár, P., Girshick, R., He, K., Hariharan, B., Belongie, S.: Feature pyramid networks for object detection. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 936–944, July 2017. ISSN: 1063–6919 Lin, T.Y., Dollár, P., Girshick, R., He, K., Hariharan, B., Belongie, S.: Feature pyramid networks for object detection. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 936–944, July 2017. ISSN: 1063–6919
26.
Zurück zum Zitat Otsu, N.: A threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybern. 9(1), 62–66 (1979)CrossRef Otsu, N.: A threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybern. 9(1), 62–66 (1979)CrossRef
28.
Zurück zum Zitat Sandler, M., Howard, A., Zhu, M., Zhmoginov, A., Chen, L.C.: MobileNetV2: inverted residuals and linear bottlenecks. In: 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 4510–4520, June 2018. ISSN: 2575–7075 Sandler, M., Howard, A., Zhu, M., Zhmoginov, A., Chen, L.C.: MobileNetV2: inverted residuals and linear bottlenecks. In: 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 4510–4520, June 2018. ISSN: 2575–7075
30.
Zurück zum Zitat Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. In: International Conference on Learning Representations (2015) Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. In: International Conference on Learning Representations (2015)
31.
Zurück zum Zitat Sánchez-Peralta, L.F., Bote-Curiel, L., Picón, A., Sánchez-Margallo, F.M., Pagador, J.B.: Deep learning to find colorectal polyps in colonoscopy: a systematic literature review. Artif. Intell. Med. 108, 101923 (2020)CrossRef Sánchez-Peralta, L.F., Bote-Curiel, L., Picón, A., Sánchez-Margallo, F.M., Pagador, J.B.: Deep learning to find colorectal polyps in colonoscopy: a systematic literature review. Artif. Intell. Med. 108, 101923 (2020)CrossRef
32.
Zurück zum Zitat Sánchez-Peralta, L.F., Picón, A., Antequera-Barroso, J.A., Ortega-Morán, J.F., Sánchez-Margallo, F.M., Pagador, J.B.: Eigenloss: combined PCA-based loss function for polyp segmentation. Mathematics 8(8), 1316 (2020)CrossRef Sánchez-Peralta, L.F., Picón, A., Antequera-Barroso, J.A., Ortega-Morán, J.F., Sánchez-Margallo, F.M., Pagador, J.B.: Eigenloss: combined PCA-based loss function for polyp segmentation. Mathematics 8(8), 1316 (2020)CrossRef
33.
Zurück zum Zitat Tian, Z., He, T., Shen, C., Yan, Y.: Decoders Matter for Semantic Segmentation: Data-Dependent Decoding Enables Flexible Feature Aggregation, pp. 3126–3135 (2019) Tian, Z., He, T., Shen, C., Yan, Y.: Decoders Matter for Semantic Segmentation: Data-Dependent Decoding Enables Flexible Feature Aggregation, pp. 3126–3135 (2019)
34.
Zurück zum Zitat Vázquez, D., et al.: A benchmark for endoluminal scene segmentation of colonoscopy images. J. Healthc. Eng. 2017, 4037190 (2017)CrossRef Vázquez, D., et al.: A benchmark for endoluminal scene segmentation of colonoscopy images. J. Healthc. Eng. 2017, 4037190 (2017)CrossRef
35.
Zurück zum Zitat Wickstrøm, K., Kampffmeyer, M., Jenssen, R.: Uncertainty and interpretability in convolutional neural networks for semantic segmentation of colorectal polyps. Med. Image Anal. 60, 101619 (2020)CrossRef Wickstrøm, K., Kampffmeyer, M., Jenssen, R.: Uncertainty and interpretability in convolutional neural networks for semantic segmentation of colorectal polyps. Med. Image Anal. 60, 101619 (2020)CrossRef
37.
Zurück zum Zitat Xie, S., Girshick, R., Dollár, P., Tu, Z., He, K.: Aggregated residual transformations for deep neural networks. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 5987–5995, July 2017. ISSN: 1063–6919 Xie, S., Girshick, R., Dollár, P., Tu, Z., He, K.: Aggregated residual transformations for deep neural networks. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 5987–5995, July 2017. ISSN: 1063–6919
38.
Zurück zum Zitat Zhang, R., Zheng, Y., Poon, C.C.Y., Shen, D., Lau, J.Y.W.: Polyp detection during colonoscopy using a regression-based convolutional neural network with a tracker. Pattern Recogn. 83, 209–219 (2018)CrossRef Zhang, R., Zheng, Y., Poon, C.C.Y., Shen, D., Lau, J.Y.W.: Polyp detection during colonoscopy using a regression-based convolutional neural network with a tracker. Pattern Recogn. 83, 209–219 (2018)CrossRef
39.
Zurück zum Zitat Zhou, Z., Siddiquee, M.M.R., Tajbakhsh, N., Liang, J.: UNet++: redesigning skip connections to exploit multiscale features in image segmentation. IEEE Trans. Med. Imaging 39(6), 1856–1867 (2020)CrossRef Zhou, Z., Siddiquee, M.M.R., Tajbakhsh, N., Liang, J.: UNet++: redesigning skip connections to exploit multiscale features in image segmentation. IEEE Trans. Med. Imaging 39(6), 1856–1867 (2020)CrossRef
Metadaten
Titel
Double Encoder-Decoder Networks for Gastrointestinal Polyp Segmentation
verfasst von
Adrian Galdran
Gustavo Carneiro
Miguel A. González Ballester
Copyright-Jahr
2021
DOI
https://doi.org/10.1007/978-3-030-68763-2_22