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2014 | OriginalPaper | Buchkapitel

Effect of Data Acquisition and Analysis Method on Fiber Orientation Estimation in Diffusion MRI

verfasst von : Bryce Wilkins, Namgyun Lee, Vidya Rajagopalan, Meng Law, Natasha Leporé

Erschienen in: Computational Diffusion MRI and Brain Connectivity

Verlag: Springer International Publishing

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Abstract

In this paper we investigate the effect of single-shell q-space diffusion sampling strategies and applicable multiple-fiber analysis methods on fiber orientation estimation in Diffusion MRI. Specifically, we develop a simulation based on an in-vivo data set and compare a two-compartment “ball-and-stick” model, a constrained spherical deconvolution approach, a generalized Fourier transform approach, and three related methods based on transforms of Fourier data on the sphere. We evaluate each method for N = 20, 30, 40, 60, 90 and 120 angular diffusion-weighted samples, at SNR = 18 and diffusion-weighting \(b = 1,000\,\mathrm{s}/\mathrm{{mm}}^{2}\), common to clinical studies. Our results quantitatively show the methods are most distinguished from each other by their fiber detection ability. Overall, the “ball-and-stick” model and spherical deconvolution approach were found to perform best, yielding the least orientation error, and greatest detection rate of fibers.

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Literatur
1.
Zurück zum Zitat Aganj, I., Lenglet, C., Sapiro, G., Yacoub, E., Ugurbil, K., Harel, N.: Reconstruction of the orientation distribution function in single-and multiple-shell q-ball imaging within constant solid angle. Magn. Reson. Med. 64, 554–566 (2010) Aganj, I., Lenglet, C., Sapiro, G., Yacoub, E., Ugurbil, K., Harel, N.: Reconstruction of the orientation distribution function in single-and multiple-shell q-ball imaging within constant solid angle. Magn. Reson. Med. 64, 554–566 (2010)
2.
Zurück zum Zitat Basser, P.J., Mattiello, J., Le Bihan, D.: Estimation of the effective self-diffusion tensor from the NMR spin echo. J. Magn. Reson. B 103, 247–254 (1994)CrossRef Basser, P.J., Mattiello, J., Le Bihan, D.: Estimation of the effective self-diffusion tensor from the NMR spin echo. J. Magn. Reson. B 103, 247–254 (1994)CrossRef
3.
Zurück zum Zitat Behrens, T.E.J., Woolrich, M.W., Jenkinson, M., Johansen-Berg, H., Nunes, R.G., Clare, S., Matthews, P.M., et al.: Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50, 1077–1088 (2003)CrossRef Behrens, T.E.J., Woolrich, M.W., Jenkinson, M., Johansen-Berg, H., Nunes, R.G., Clare, S., Matthews, P.M., et al.: Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50, 1077–1088 (2003)CrossRef
4.
Zurück zum Zitat Bozzali, M., Falini, A., Franceschi, M., Cercignani, M., Zuffi, M., Scotti, G., et al.: White matter damage in Alzheimer’s disease assessed in vivo using diffusion tensor magnetic resonance imaging. J. Neurol. Neurosur. Ps. 72, 742–746 (2002)CrossRef Bozzali, M., Falini, A., Franceschi, M., Cercignani, M., Zuffi, M., Scotti, G., et al.: White matter damage in Alzheimer’s disease assessed in vivo using diffusion tensor magnetic resonance imaging. J. Neurol. Neurosur. Ps. 72, 742–746 (2002)CrossRef
5.
Zurück zum Zitat Cook, P.A., Symms, M., Boulby, P.A., Alexander, D.C.: Optimal acquisition orders of diffusion-weighted MRI measurements. J. Magn. Reson. Imaging 25, 1051–1058 (2007)CrossRef Cook, P.A., Symms, M., Boulby, P.A., Alexander, D.C.: Optimal acquisition orders of diffusion-weighted MRI measurements. J. Magn. Reson. Imaging 25, 1051–1058 (2007)CrossRef
6.
Zurück zum Zitat Descoteaux, M., Angelino, E., Fitzgibbons, S., Deriche, R.: Regularized, fast, and robust analytical q-ball imaging. Magn. Reson. Med. 58, 497–510 (2007)CrossRef Descoteaux, M., Angelino, E., Fitzgibbons, S., Deriche, R.: Regularized, fast, and robust analytical q-ball imaging. Magn. Reson. Med. 58, 497–510 (2007)CrossRef
7.
Zurück zum Zitat Haldar, J.P., Leahy, R.M.: Linear transforms for Fourier data on the sphere: application to high angular resolution diffusion MRI of the brain. NeuroImage 71, 233–247 (2013)CrossRef Haldar, J.P., Leahy, R.M.: Linear transforms for Fourier data on the sphere: application to high angular resolution diffusion MRI of the brain. NeuroImage 71, 233–247 (2013)CrossRef
8.
Zurück zum Zitat Shenton, M.E., Hamoda, H.M., Schneiderman, J.S., Bouix, S., Pasternak, O., Rathi, Y., et al.: A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury. Brain Imag. Behav. 6, 137–192 (2012)CrossRef Shenton, M.E., Hamoda, H.M., Schneiderman, J.S., Bouix, S., Pasternak, O., Rathi, Y., et al.: A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury. Brain Imag. Behav. 6, 137–192 (2012)CrossRef
9.
Zurück zum Zitat Smith, S.M., Jenkinson, M., Woolrich, M.W., Beckmann, C.F., Behrens, T.E., Johansen-Berg, H., Bannister, P.R., et al.: Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage 23, S208–S219 (2004)CrossRef Smith, S.M., Jenkinson, M., Woolrich, M.W., Beckmann, C.F., Behrens, T.E., Johansen-Berg, H., Bannister, P.R., et al.: Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage 23, S208–S219 (2004)CrossRef
10.
Zurück zum Zitat Sporns, O.: The human connectome: a complex network. Ann. N. Y. Acad. Sci. 1224, 109–125 (2011)CrossRef Sporns, O.: The human connectome: a complex network. Ann. N. Y. Acad. Sci. 1224, 109–125 (2011)CrossRef
11.
Zurück zum Zitat Tournier, J.-D., Calamante, F., Connelly, A.: Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35, 1459–1472 (2007)CrossRef Tournier, J.-D., Calamante, F., Connelly, A.: Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35, 1459–1472 (2007)CrossRef
12.
Zurück zum Zitat Tournier, J.-D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imag. Syst. Tech. 22, 53–66 (2012)CrossRef Tournier, J.-D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imag. Syst. Tech. 22, 53–66 (2012)CrossRef
13.
Zurück zum Zitat Tuch, D.S.: Q-ball imaging. Magn. Reson. Med. 52, 1358–1372 (2004) Tuch, D.S.: Q-ball imaging. Magn. Reson. Med. 52, 1358–1372 (2004)
14.
Zurück zum Zitat Yeh, F.C., Wedeen, V.J., Tseng, W.Y.: Generalized q-sampling imaging. IEEE Trans. Med. Imag. 29, 1626–1635 (2010)CrossRef Yeh, F.C., Wedeen, V.J., Tseng, W.Y.: Generalized q-sampling imaging. IEEE Trans. Med. Imag. 29, 1626–1635 (2010)CrossRef
Metadaten
Titel
Effect of Data Acquisition and Analysis Method on Fiber Orientation Estimation in Diffusion MRI
verfasst von
Bryce Wilkins
Namgyun Lee
Vidya Rajagopalan
Meng Law
Natasha Leporé
Copyright-Jahr
2014
DOI
https://doi.org/10.1007/978-3-319-02475-2_2