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2019 | OriginalPaper | Chapter

A Skip-Connected 3D DenseNet Networks with Adversarial Training for Volumetric Segmentation

Authors : Toan Duc Bui, Sang-il Ahn, Yongwoo Lee, Jitae Shin

Published in: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

Publisher: Springer International Publishing

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Abstract

In this paper, we propose a novel end-to-end adversarial training on volumetric brain segmentation architecture that allows to enforce long-range spatial label contiguity and label consistency. The proposed network consists of two networks: generator and discriminator. The generator network allows to take volumetric image as input and provides a volumetric probability map for each tissue. Then, the discriminator network learns to differentiate ground-truth maps from the probability maps of generator network. We design a discriminator in a fully convolutional manner to differentiate the predicted probability maps from the ground-truth segmentation distribution with the consideration of the spatial information on voxel level, which makes it difficult to learn the discriminator. In order to overcome it, the proposed discriminator provides a 3D confidence map which indicates corresponding regions of the probability maps close to the ground-truth. Based on the 3D confidence map information, the generator network will refine prediction output close to the ground-truth maps in a high-order structure.

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Literature
1.
2.
go back to reference Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49CrossRef Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://​doi.​org/​10.​1007/​978-3-319-46723-8_​49CrossRef
3.
go back to reference Dice, L.R.: Measures of the amount of ecologic association between species. Ecology 26(3), 297–302 (1945)CrossRef Dice, L.R.: Measures of the amount of ecologic association between species. Ecology 26(3), 297–302 (1945)CrossRef
4.
go back to reference Goodfellow, I., et al.: Generative adversarial nets. In: Advances in Neural Information Processing Systems, pp. 2672–2680 (2014) Goodfellow, I., et al.: Generative adversarial nets. In: Advances in Neural Information Processing Systems, pp. 2672–2680 (2014)
6.
go back to reference Hung, W.C., Tsai, Y.H., Liou, Y.T., Lin, Y.Y., Yang, M.H.: Adversarial learning for semi-supervised semantic segmentation. arXiv preprint arXiv:1802.07934 (2018) Hung, W.C., Tsai, Y.H., Liou, Y.T., Lin, Y.Y., Yang, M.H.: Adversarial learning for semi-supervised semantic segmentation. arXiv preprint arXiv:​1802.​07934 (2018)
7.
go back to reference Huttenlocher, D.P., Klanderman, G.A., Rucklidge, W.J.: Comparing images using the hausdorff distance. IEEE Trans. Pattern Anal. Mach. Intell. 15(9), 850–863 (1993)CrossRef Huttenlocher, D.P., Klanderman, G.A., Rucklidge, W.J.: Comparing images using the hausdorff distance. IEEE Trans. Pattern Anal. Mach. Intell. 15(9), 850–863 (1993)CrossRef
9.
go back to reference LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436 (2015)CrossRef LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436 (2015)CrossRef
10.
go back to reference Luc, P., Couprie, C., Chintala, S., Verbeek, J.: Semantic segmentation using adversarial networks. arXiv preprint arXiv:1611.08408 (2016) Luc, P., Couprie, C., Chintala, S., Verbeek, J.: Semantic segmentation using adversarial networks. arXiv preprint arXiv:​1611.​08408 (2016)
11.
go back to reference Mendrik, A.M., et al.: Mrbrains challenge: online evaluation framework for brain image segmentation in 3T MRI scans. Comput. Intell. Neurosci. 2015, 1 (2015)CrossRef Mendrik, A.M., et al.: Mrbrains challenge: online evaluation framework for brain image segmentation in 3T MRI scans. Comput. Intell. Neurosci. 2015, 1 (2015)CrossRef
12.
go back to reference Moeskops, P., Viergever, M.A., Mendrik, A.M., de Vries, L.S., Benders, M.J., Išgum, I.: Automatic segmentation of MR brain images with a convolutional neural network. IEEE Trans. Med. Imaging 35(5), 1252–1261 (2016)CrossRef Moeskops, P., Viergever, M.A., Mendrik, A.M., de Vries, L.S., Benders, M.J., Išgum, I.: Automatic segmentation of MR brain images with a convolutional neural network. IEEE Trans. Med. Imaging 35(5), 1252–1261 (2016)CrossRef
13.
go back to reference Radford, A., Metz, L., Chintala, S.: Unsupervised representation learning with deep convolutional generative adversarial networks. arXiv preprint arXiv:1511.06434 (2015) Radford, A., Metz, L., Chintala, S.: Unsupervised representation learning with deep convolutional generative adversarial networks. arXiv preprint arXiv:​1511.​06434 (2015)
Metadata
Title
A Skip-Connected 3D DenseNet Networks with Adversarial Training for Volumetric Segmentation
Authors
Toan Duc Bui
Sang-il Ahn
Yongwoo Lee
Jitae Shin
Copyright Year
2019
DOI
https://doi.org/10.1007/978-3-030-11723-8_38

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