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2017 | Supplement | Chapter

A Visualization System for Dynamic Protein Structure and Amino Acid Network

Authors : Silan You, Lifeng Gao, Yongpan Hua, Min Zhu, Mingzhao Li

Published in: Cooperative Design, Visualization, and Engineering

Publisher: Springer International Publishing

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Abstract

In this paper, we design and implement a visual analytics system to visualize dynamic protein structure and amino acid network. Specifically, we propose a mixed layout method based on Force-Directed Algorithm and Circular Layout Model to visualize protein structure. We design a dynamic visualization framework of the amino acid network with multiple coordinated views. We implement a prototype system and present case studies based on the molecular simulation data of the β2-Adrenergic receptor (β2AR, a protein) to demonstrate the usefulness and effectiveness of our system.

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Metadata
Title
A Visualization System for Dynamic Protein Structure and Amino Acid Network
Authors
Silan You
Lifeng Gao
Yongpan Hua
Min Zhu
Mingzhao Li
Copyright Year
2017
Book
Cooperative Design, Visualization, and Engineering

Print ISBN: 978-3-319-66804-8

Electronic ISBN: 978-3-319-66805-5

Copyright Year: 2017

DOI
https://doi.org/10.1007/978-3-319-66805-5_36