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2013 | OriginalPaper | Chapter

Algorithmic Tile Self-Assembly for Solving the Maximal Matching Problem

Authors : Zhen Cheng, Yufang Huang, Jianhua Xiao

Published in: Proceedings of The Eighth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA), 2013

Publisher: Springer Berlin Heidelberg

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Abstract

The maximal matching problem is a classic combinatorial optimization problem. Recently, computation by algorithmic tile self-assembly is proved to be a promising technique in nanotechnology, and this computational model is also demonstrated to be Turing universal. In this paper, the process of tile self-assembly model which is used to solve the maximal matching problem is shown including three operations: nondeterministic guess operation, AND operation and comparing operation. Our method can be performed this problem in Θ(mn) steps, here m and n is the number of edges and vertices of the given graph respectively.

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Literature
1.
go back to reference Adleman LM (1994) Molecular computation of solutions to combinatorial problems. Science 266:1021–1024CrossRef Adleman LM (1994) Molecular computation of solutions to combinatorial problems. Science 266:1021–1024CrossRef
2.
go back to reference Pan LQ, Liu GW, Xu J (2004) Solid phase based DNA solution of the coloring problem. Prog Nat Sci 14:104–107MathSciNet Pan LQ, Liu GW, Xu J (2004) Solid phase based DNA solution of the coloring problem. Prog Nat Sci 14:104–107MathSciNet
4.
go back to reference Seeman NC (1998) DNA nanotechnology: novel DNA constructions. Annu Rev Biophy Biomol Struct 27:225–248CrossRef Seeman NC (1998) DNA nanotechnology: novel DNA constructions. Annu Rev Biophy Biomol Struct 27:225–248CrossRef
5.
go back to reference Mao C, Sun W, Seeman NC (1999) Designed two dimensional DNA Holliday junction arrays visualized by atomic force microscopy. J Am Chem Soc 121:5437–5443CrossRef Mao C, Sun W, Seeman NC (1999) Designed two dimensional DNA Holliday junction arrays visualized by atomic force microscopy. J Am Chem Soc 121:5437–5443CrossRef
6.
go back to reference Barish R, Rothemund PW, Winfree E (2005) Two computational primitives for algorithmic self-assembly: copying and counting. Nano Lett 12:2586–2592CrossRef Barish R, Rothemund PW, Winfree E (2005) Two computational primitives for algorithmic self-assembly: copying and counting. Nano Lett 12:2586–2592CrossRef
7.
go back to reference Lo PK, Metera KL, Sleiman HF (2010) Self-assembly of three-dimensional DNA nanostructures and potential biological applications. Curr Opin Chem Biol 14:597–607CrossRef Lo PK, Metera KL, Sleiman HF (2010) Self-assembly of three-dimensional DNA nanostructures and potential biological applications. Curr Opin Chem Biol 14:597–607CrossRef
8.
go back to reference Wang H (1961) Proving theorems by pattern recognition. I. Bell Syst Tech J 40:1–42CrossRef Wang H (1961) Proving theorems by pattern recognition. I. Bell Syst Tech J 40:1–42CrossRef
9.
go back to reference Winfree E (1998) Algorithmic self-assembly of DNA. Ph.D. thesis, Caltech, Pasadena, CA Winfree E (1998) Algorithmic self-assembly of DNA. Ph.D. thesis, Caltech, Pasadena, CA
10.
go back to reference Rothemund P, Winfree E (2000) The program-size complexity of self-assembled squares. In: Proceedings of the annual ACM symposium on theory of computing, Portland, USA, pp 459–468, May 21–23 Rothemund P, Winfree E (2000) The program-size complexity of self-assembled squares. In: Proceedings of the annual ACM symposium on theory of computing, Portland, USA, pp 459–468, May 21–23
11.
go back to reference Fujibayashi K, Murata S (2009) Precise simulation model for DNA tile self-assembly. IEEE T Nanotechnol 8:361–368CrossRef Fujibayashi K, Murata S (2009) Precise simulation model for DNA tile self-assembly. IEEE T Nanotechnol 8:361–368CrossRef
13.
go back to reference Reif JH, Sahu S, Yin P (2011) Complexity of graph self-assembly in accretive systems and self-destructible systems. Theor Comput Sci 412:1592–1605MathSciNetCrossRefMATH Reif JH, Sahu S, Yin P (2011) Complexity of graph self-assembly in accretive systems and self-destructible systems. Theor Comput Sci 412:1592–1605MathSciNetCrossRefMATH
14.
go back to reference Cardinal J, Labbe M, Langerman S et al (2005) A tight analysis of the maximal matching heuristic. Lect Notes Comput Sci 3595:701–709MathSciNetCrossRefMATH Cardinal J, Labbe M, Langerman S et al (2005) A tight analysis of the maximal matching heuristic. Lect Notes Comput Sci 3595:701–709MathSciNetCrossRefMATH
15.
go back to reference Ding X, Yin ZX, Wang Y (2010) A DNA algorithm for maximal matching problem. International conference on bio-inspired computing: theories and applications, Beijing, China, pp 143–147 Ding X, Yin ZX, Wang Y (2010) A DNA algorithm for maximal matching problem. International conference on bio-inspired computing: theories and applications, Beijing, China, pp 143–147
Metadata
Title
Algorithmic Tile Self-Assembly for Solving the Maximal Matching Problem
Authors
Zhen Cheng
Yufang Huang
Jianhua Xiao
Copyright Year
2013
Publisher
Springer Berlin Heidelberg
DOI
https://doi.org/10.1007/978-3-642-37502-6_100

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