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2019 | OriginalPaper | Chapter

Automatic Detection of Tumor Buds in Pan-Cytokeratin Stained Colorectal Cancer Sections by a Hybrid Image Analysis Approach

Authors : Matthias Bergler, Michaela Benz, David Rauber, David Hartmann, Malte Kötter, Markus Eckstein, Regine Schneider-Stock, Arndt Hartmann, Susanne Merkel, Volker Bruns, Thomas Wittenberg, Carol Geppert

Published in: Digital Pathology

Publisher: Springer International Publishing

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Abstract

This contribution introduces a novel approach to the automatic detection of tumor buds in a digitalized pan-cytokeratin stained colorectal cancer slide. Tumor buds are representing an invasive pattern and are frequently investigated as a new diagnostic factor for measuring the aggressiveness of colorectal cancer. However, counting the number of buds under the microscope in a high power field by eyeballing is a strenuous, lengthy and error-prone task, whereas an automated solution could save time for the pathologists and enhance reproducibility. We propose a new hybrid method that consists of two steps. First possible tumor bud candidates are detected using a chain of classical image processing methods. Afterwards a convolutional deep neural network is applied to filter and reduce the number of false positive candidates detected in the first step. By comparing the automatically detected buds with a gold standard created by manual annotations, we gain a score of 0.977 for precision and 0.934 for sensitivity in our test sets on over 8.000 tumor buds.

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Literature
1.
go back to reference Deng, J., Dong, W., Socher, R., Li, L.J., Li, K., Fei-Fei, L.: ImageNet: a large-scale hierarchical image database. In: 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009, pp. 248–255. IEEE (2009) Deng, J., Dong, W., Socher, R., Li, L.J., Li, K., Fei-Fei, L.: ImageNet: a large-scale hierarchical image database. In: 2009 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2009, pp. 248–255. IEEE (2009)
2.
go back to reference Dong, Y., et al.: Evaluations of deep convolutional neural networks for automatic identification of malaria infected cells. In: 2017 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), pp. 101–104. IEEE (2017) Dong, Y., et al.: Evaluations of deep convolutional neural networks for automatic identification of malaria infected cells. In: 2017 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), pp. 101–104. IEEE (2017)
3.
go back to reference Dou, Q., et al.: Automatic detection of cerebral microbleeds from mr images via 3D convolutional neural networks. IEEE Trans. Med. Imaging 35(5), 1182–1195 (2016)CrossRef Dou, Q., et al.: Automatic detection of cerebral microbleeds from mr images via 3D convolutional neural networks. IEEE Trans. Med. Imaging 35(5), 1182–1195 (2016)CrossRef
4.
go back to reference Greenspan, H., Van Ginneken, B., Summers, R.M.: Guest editorial deep learning in medical imaging: overview and future promise of an exciting new technique. IEEE Trans. Med. Imaging 35(5), 1153–1159 (2016)CrossRef Greenspan, H., Van Ginneken, B., Summers, R.M.: Guest editorial deep learning in medical imaging: overview and future promise of an exciting new technique. IEEE Trans. Med. Imaging 35(5), 1153–1159 (2016)CrossRef
7.
go back to reference Krizhevsky, A., Sutskever, I., Hinton, G.E.: ImageNet classification with deep convolutional neural networks. In: Advances in Neural Information Processing Systems, pp. 1097–1105 (2012) Krizhevsky, A., Sutskever, I., Hinton, G.E.: ImageNet classification with deep convolutional neural networks. In: Advances in Neural Information Processing Systems, pp. 1097–1105 (2012)
10.
go back to reference Ribeiro, E., Uhl, A., Wimmer, G., Häfner, M.: Exploring deep learning and transfer learning for colonic polyp classification. Comput. Math. Methods Med. 2016 (2016) Ribeiro, E., Uhl, A., Wimmer, G., Häfner, M.: Exploring deep learning and transfer learning for colonic polyp classification. Comput. Math. Methods Med. 2016 (2016)
11.
go back to reference Schmiegel, W., Pox, C.P., et al.: S3-Leitlinie Kolorektales Karzinom. Arbeitsgemeinschaft der Wissenschaftlichen Medizinischen Fachgesellschaften e.V. (2019) Schmiegel, W., Pox, C.P., et al.: S3-Leitlinie Kolorektales Karzinom. Arbeitsgemeinschaft der Wissenschaftlichen Medizinischen Fachgesellschaften e.V. (2019)
12.
go back to reference Sirinukunwattana, K., Raza, S.E.A., Tsang, Y.W., Snead, D.R., Cree, I.A., Rajpoot, N.M.: Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans. Med. Imaging 35(5), 1196–1206 (2016)CrossRef Sirinukunwattana, K., Raza, S.E.A., Tsang, Y.W., Snead, D.R., Cree, I.A., Rajpoot, N.M.: Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans. Med. Imaging 35(5), 1196–1206 (2016)CrossRef
14.
go back to reference Wittekind, C.: TNM: Klassifikation maligner Tumoren, vol. 8. Wiley, New York (2017) Wittekind, C.: TNM: Klassifikation maligner Tumoren, vol. 8. Wiley, New York (2017)
Metadata
Title
Automatic Detection of Tumor Buds in Pan-Cytokeratin Stained Colorectal Cancer Sections by a Hybrid Image Analysis Approach
Authors
Matthias Bergler
Michaela Benz
David Rauber
David Hartmann
Malte Kötter
Markus Eckstein
Regine Schneider-Stock
Arndt Hartmann
Susanne Merkel
Volker Bruns
Thomas Wittenberg
Carol Geppert
Copyright Year
2019
DOI
https://doi.org/10.1007/978-3-030-23937-4_10

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