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2014 | OriginalPaper | Chapter

Characterization of the Chemical Reactivity and Selectivity of DNA Bases Through the Use of DFT-Based Descriptors

Authors : Vanessa Labet, Christophe Morell, Vincent Tognetti, Olga A. Syzgantseva, Laurent Joubert, Nelly Jorge, André Grand, Jean Cadet

Published in: Structure, Bonding and Reactivity of Heterocyclic Compounds

Publisher: Springer Berlin Heidelberg

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Abstract

In this chapter, the use of conceptual DFT descriptors for understanding the occurrence and likely mechanisms of formation of DNA lesions is reviewed. After a synthetic presentation of the principal DFT-based descriptors, the global reactivity and selectivity of DNA bases are investigated from global and local descriptors. Then, the formation of several DNA lesions is studied including cytosine compound deamination, intra-strand DNA cross-links, and pyrimidine dimer photoproducts. It appears from the use of the global and local DFT-based descriptors that most of the experimental facts can be theoretically rationalized.

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Literature
2.
go back to reference Cadet J (1994) In: Hemminki K, Dipple A, Shuker DEG, Kadlubar FF, Segerbäck D, Bartsch H (eds) DNA adducts, identification and biological significance. IARC Scientific Publication, Lyon, pp 125–245 Cadet J (1994) In: Hemminki K, Dipple A, Shuker DEG, Kadlubar FF, Segerbäck D, Bartsch H (eds) DNA adducts, identification and biological significance. IARC Scientific Publication, Lyon, pp 125–245
3.
go back to reference Gentil A, Cabrak-Neto JB, Mariage-Samson R, Margot A, Imbach J-L, Rayner B, Sarasin A (1992) J Mol Biol 227:981CrossRef Gentil A, Cabrak-Neto JB, Mariage-Samson R, Margot A, Imbach J-L, Rayner B, Sarasin A (1992) J Mol Biol 227:981CrossRef
4.
go back to reference Carell T, Brandmayr C, Hienzch A, Müller M, Pearson D, Reiter V, Thoma I, Thumbs P, Wagner M (2012) Angew Chem Int Ed 51:7110CrossRef Carell T, Brandmayr C, Hienzch A, Müller M, Pearson D, Reiter V, Thoma I, Thumbs P, Wagner M (2012) Angew Chem Int Ed 51:7110CrossRef
5.
go back to reference Branco MR, Ficz G, Reik W (2012) Nat Rev Genet 13:7 Branco MR, Ficz G, Reik W (2012) Nat Rev Genet 13:7
7.
go back to reference Tahliani M, Koh KP, Shen YH, Pastor WA, Bandukwala H, Brudno Y, Agarawal S, Iyer LM, Liu DR, Aravind L, Rao A (2009) Science 324:930CrossRef Tahliani M, Koh KP, Shen YH, Pastor WA, Bandukwala H, Brudno Y, Agarawal S, Iyer LM, Liu DR, Aravind L, Rao A (2009) Science 324:930CrossRef
10.
12.
go back to reference Neddermann P, Jiricny J (1993) J Biol Chem 268:21218 Neddermann P, Jiricny J (1993) J Biol Chem 268:21218
13.
go back to reference Cadet J, Loft S, Olinski R, Evans MD, Bialkowski K, Wagner JR, Dedon PC, Moeller P, Greenberg MM, Cooke MS (2012) Free Radic Res 46:367CrossRef Cadet J, Loft S, Olinski R, Evans MD, Bialkowski K, Wagner JR, Dedon PC, Moeller P, Greenberg MM, Cooke MS (2012) Free Radic Res 46:367CrossRef
17.
go back to reference von Sonntag C (2006) Free-radical-induced DNA damage and its repair – a chemical perspective. Springer, Berlin/Heidelberg/New YorkCrossRef von Sonntag C (2006) Free-radical-induced DNA damage and its repair – a chemical perspective. Springer, Berlin/Heidelberg/New YorkCrossRef
18.
19.
go back to reference Cadet J, Ravanat J-L, TavernaPorro M, Menoni H, Angelov D (2012) Cancer Lett 327:5CrossRef Cadet J, Ravanat J-L, TavernaPorro M, Menoni H, Angelov D (2012) Cancer Lett 327:5CrossRef
21.
22.
go back to reference Beckman JS, Beckman TW, Chen J, Marshall PA, Freeman BA (1990) Proc Natl Acad Sci U S A 87:1620CrossRef Beckman JS, Beckman TW, Chen J, Marshall PA, Freeman BA (1990) Proc Natl Acad Sci U S A 87:1620CrossRef
23.
go back to reference Denicola A, Freeman BA, Trujillo M, Radi R (1996) Arch Biochem Biophys 333:49CrossRef Denicola A, Freeman BA, Trujillo M, Radi R (1996) Arch Biochem Biophys 333:49CrossRef
24.
25.
go back to reference Crean C, Uvaydov Y, Geacintov N, Shafirovich V (2008) Nucleic Acids Res 36:742CrossRef Crean C, Uvaydov Y, Geacintov N, Shafirovich V (2008) Nucleic Acids Res 36:742CrossRef
26.
go back to reference Perrier S, Hau J, Gasparutto D, Cadet J, Favier A, Ravanat J-L (2006) J Am Chem Soc 128:5703CrossRef Perrier S, Hau J, Gasparutto D, Cadet J, Favier A, Ravanat J-L (2006) J Am Chem Soc 128:5703CrossRef
28.
go back to reference Madugundu GS, Wagner JR, Cadet J, Kropachev K, Yun BH, Geacintov NE, Shafirovich V (2013) Chem Res Toxicol 26:1031–1033 Madugundu GS, Wagner JR, Cadet J, Kropachev K, Yun BH, Geacintov NE, Shafirovich V (2013) Chem Res Toxicol 26:1031–1033
29.
go back to reference Cadet J, Ravanat J-L, Martinez GR, Medeiros MH, Di Mascio P (2006) Photochem Photobiol 82:1219CrossRef Cadet J, Ravanat J-L, Martinez GR, Medeiros MH, Di Mascio P (2006) Photochem Photobiol 82:1219CrossRef
32.
33.
go back to reference Courdavault S, Baudouin C, Charveron M, Canghilem B, Favier A, Cadet J, Douki T (2005) DNA Repair (Amst) 4:836CrossRef Courdavault S, Baudouin C, Charveron M, Canghilem B, Favier A, Cadet J, Douki T (2005) DNA Repair (Amst) 4:836CrossRef
38.
40.
go back to reference Belmadoui N, Boussicault F, Guerra M, Ravanat J-L, Chatgilialoglu C, Cadet J (2010) Org Biomol Chem 8:3211CrossRef Belmadoui N, Boussicault F, Guerra M, Ravanat J-L, Chatgilialoglu C, Cadet J (2010) Org Biomol Chem 8:3211CrossRef
41.
42.
44.
go back to reference Ayers PW, Anderson JSM, Bartolotti JL (2005) Int J Quantum Chem 103:1793 Ayers PW, Anderson JSM, Bartolotti JL (2005) Int J Quantum Chem 103:1793
46.
49.
go back to reference Geerlings P, Sablon N, Fievez T, De Proft F (2010) Abs Papers Am Chem Soc 240:212 Geerlings P, Sablon N, Fievez T, De Proft F (2010) Abs Papers Am Chem Soc 240:212
51.
go back to reference Morell C, Grand A, Toro-Labbé A, Chermette H (2013) J Mol Model 19:2893–2900CrossRef Morell C, Grand A, Toro-Labbé A, Chermette H (2013) J Mol Model 19:2893–2900CrossRef
64.
go back to reference Hocquet A, Toro-Labbé A, Chermette H (2004) J Mol Struct (THEOCHEM) 686:213CrossRef Hocquet A, Toro-Labbé A, Chermette H (2004) J Mol Struct (THEOCHEM) 686:213CrossRef
65.
go back to reference Cadet J, Grand A, Morell C, Letelier JR, Montcada JL, Toro-Labbé A (2002) J Phys Chem A 107:5334CrossRef Cadet J, Grand A, Morell C, Letelier JR, Montcada JL, Toro-Labbé A (2002) J Phys Chem A 107:5334CrossRef
66.
go back to reference Fievez T, Weckhuysen BM, De Proft F, Geerlings P (2009) J Phys Chem C 113:19905CrossRef Fievez T, Weckhuysen BM, De Proft F, Geerlings P (2009) J Phys Chem C 113:19905CrossRef
67.
go back to reference Muya JT, De Proft F, Geerlings P, Nguyen MT, Ceulemans A (2011) J Phys Chem A 115:9609 Muya JT, De Proft F, Geerlings P, Nguyen MT, Ceulemans A (2011) J Phys Chem A 115:9609
68.
69.
70.
go back to reference Sablon N, De Proft P, Sola M, Geerlings P (2012) Phys Chem Chem Phys 14:3960CrossRef Sablon N, De Proft P, Sola M, Geerlings P (2012) Phys Chem Chem Phys 14:3960CrossRef
74.
75.
go back to reference Morell C, Labet V, Grand A, Ayers PW, Geerlings P, De Proft F, Chermette H (2009) J Chem Theory Comput 5:2274CrossRef Morell C, Labet V, Grand A, Ayers PW, Geerlings P, De Proft F, Chermette H (2009) J Chem Theory Comput 5:2274CrossRef
76.
go back to reference Morell C, Labet V, Ayers PW, Genovese L, Grand A, Chermette H (2011) J Phys Chem A 115:8032CrossRef Morell C, Labet V, Ayers PW, Genovese L, Grand A, Chermette H (2011) J Phys Chem A 115:8032CrossRef
77.
go back to reference Tognetti V, Morell C, Ayers PW, Joubert L, Chermette H (2013) Phys Chem Chem Phys 15:14465–14475 Tognetti V, Morell C, Ayers PW, Joubert L, Chermette H (2013) Phys Chem Chem Phys 15:14465–14475
80.
81.
go back to reference Saha S, Wang F, MacNaughton JB, Moewes A, Chang DP (2008) J Synchrotron Radiat 15:151CrossRef Saha S, Wang F, MacNaughton JB, Moewes A, Chang DP (2008) J Synchrotron Radiat 15:151CrossRef
83.
go back to reference Parthasarti R, Amutha R, Subramanian V, Nair BU, Ramasami T (2004) J Phys Chem A 108:3817CrossRef Parthasarti R, Amutha R, Subramanian V, Nair BU, Ramasami T (2004) J Phys Chem A 108:3817CrossRef
84.
go back to reference Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA Jr, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian 09, Revision A.02. Gaussian, Wallingford Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA Jr, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian 09, Revision A.02. Gaussian, Wallingford
86.
87.
go back to reference Cadet J, Berger M, Douki T, Ravanat J-L (1997) Rev Physiol Biochem Pharmacol 131:1 Cadet J, Berger M, Douki T, Ravanat J-L (1997) Rev Physiol Biochem Pharmacol 131:1
88.
go back to reference Grand A, Morell C, Labet V, Cadet J, Eriksson LA (2007) J Phys Chem A 111:8968–8972CrossRef Grand A, Morell C, Labet V, Cadet J, Eriksson LA (2007) J Phys Chem A 111:8968–8972CrossRef
89.
go back to reference Akin M (2010) Thesis of the Georgia Institute of Technology, Atlanta Akin M (2010) Thesis of the Georgia Institute of Technology, Atlanta
90.
go back to reference Inostroza-Rivera R, Herrera B, Toro-Labbé A (2012) Comput Theor Chem 990:222CrossRef Inostroza-Rivera R, Herrera B, Toro-Labbé A (2012) Comput Theor Chem 990:222CrossRef
92.
go back to reference Bellon S, Ravanat J-L, Gasparutto D, Cadet J (2002) Chem Res Toxicol 15:598CrossRef Bellon S, Ravanat J-L, Gasparutto D, Cadet J (2002) Chem Res Toxicol 15:598CrossRef
93.
94.
go back to reference Jaruga P, Birincioglu M, Rodriguez H, Dizdaroglu M (2001) Biochemistry 41:3703CrossRef Jaruga P, Birincioglu M, Rodriguez H, Dizdaroglu M (2001) Biochemistry 41:3703CrossRef
96.
go back to reference Xerri B, Morell C, Grand A, Cadet J, Cimino P, Barone V (2006) Org Biomol Chem 4:3986–3992CrossRef Xerri B, Morell C, Grand A, Cadet J, Cimino P, Barone V (2006) Org Biomol Chem 4:3986–3992CrossRef
97.
go back to reference Labet V, Morell C, Grand A, Cadet J, Cimino P, Barone V (2008) Org Biomol Chem 6:3300CrossRef Labet V, Morell C, Grand A, Cadet J, Cimino P, Barone V (2008) Org Biomol Chem 6:3300CrossRef
98.
go back to reference Labet V, Grand A, Morell C, Cadet J, Eriksson LA (2008) Theor Chem Acc 120:429CrossRef Labet V, Grand A, Morell C, Cadet J, Eriksson LA (2008) Theor Chem Acc 120:429CrossRef
100.
104.
105.
go back to reference Labet V, Morell C, Cadet J, Eriksson LA, Grand A (2009) J Phys Chem A 113:2524CrossRef Labet V, Morell C, Cadet J, Eriksson LA, Grand A (2009) J Phys Chem A 113:2524CrossRef
106.
go back to reference Labet V, Morell C, Douki T, Cadet J, Eriksson LA, Grand A (2010) J Phys Chem A 114:1826CrossRef Labet V, Morell C, Douki T, Cadet J, Eriksson LA, Grand A (2010) J Phys Chem A 114:1826CrossRef
107.
go back to reference Grand A, Cadet J, Eriksson LA, Labet V, Jorge NL, Schreiber ML, Douki T, Morell C (2012) Theor Chem Acc 131:1187CrossRef Grand A, Cadet J, Eriksson LA, Labet V, Jorge NL, Schreiber ML, Douki T, Morell C (2012) Theor Chem Acc 131:1187CrossRef
Metadata
Title
Characterization of the Chemical Reactivity and Selectivity of DNA Bases Through the Use of DFT-Based Descriptors
Authors
Vanessa Labet
Christophe Morell
Vincent Tognetti
Olga A. Syzgantseva
Laurent Joubert
Nelly Jorge
André Grand
Jean Cadet
Copyright Year
2014
Publisher
Springer Berlin Heidelberg
DOI
https://doi.org/10.1007/978-3-642-45149-2_2

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