Skip to main content
Top

2021 | OriginalPaper | Chapter

Developing a Three Dimensional Registration Method for Optical Coherence Tomography Data

Authors : Bansari Vadgama, Doina Logofatu, Peter Thoma

Published in: Advances in Computational Collective Intelligence

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

This work proposes a registration method for stitching different overlapping Optical Coherence Tomography (OCT) data. The algorithm is based on the basic procedure of image registration where key points and descriptors are located, feature matching is established and transformed using a homographic transformation to obtain the resultant registered images. Image similarity techniques such as mean square error, structural similarity index, and peak signal to noise ratio are the three basic approaches that are used for the analysis of these registered OCT images from the OCT datasets. An algorithm for locating the differences in the registered images against reference and target images is also demonstrated. Similarity measures and image differentiation approach provide a general analysis regarding the appropriateness of the image registration algorithm. The same methods are also used for the analysis of the optical coherence tomography volume scans. The analysis on the similarity of the images also shows that images with the highest similarities have the highest possibilities to be close to each other and can be further used for the registration. The analysis comprises the comparison of two optical coherence tomographic volumes.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Podoleanu, A.G.: Optical coherence tomography. Br. J. Radiol. 78(935), 976–988 (2005). PMID: 16249597CrossRef Podoleanu, A.G.: Optical coherence tomography. Br. J. Radiol. 78(935), 976–988 (2005). PMID: 16249597CrossRef
2.
go back to reference Huang, D., et al.: Optical coherence tomography. Science 254(5035), 1178–1181 (1991)CrossRef Huang, D., et al.: Optical coherence tomography. Science 254(5035), 1178–1181 (1991)CrossRef
3.
go back to reference Podoleanu, A.G.: Optical coherence tomography. J. Microsc. 247(3), 209–219 (2012)CrossRef Podoleanu, A.G.: Optical coherence tomography. J. Microsc. 247(3), 209–219 (2012)CrossRef
4.
go back to reference Fercher, A.F., Drexler, W., Hitzenberger, C.K., Lasser, T.: Optical coherence tomography-principles and applications. Rep. Prog. Phys. 66(2), 239 (2003)CrossRef Fercher, A.F., Drexler, W., Hitzenberger, C.K., Lasser, T.: Optical coherence tomography-principles and applications. Rep. Prog. Phys. 66(2), 239 (2003)CrossRef
5.
go back to reference Zitová, B., Flusser, J.: Image registration methods: a survey. Image Vis. Comput. 21(11), 977–1000 (2003)CrossRef Zitová, B., Flusser, J.: Image registration methods: a survey. Image Vis. Comput. 21(11), 977–1000 (2003)CrossRef
6.
go back to reference Browne, A.W., et al.: Structural and functional characterization of human stem-cell-derived retinal organoids by live imaging. Invest. Ophthalmol. Vis. Sci. 58, 3311–3318 (2017) Browne, A.W., et al.: Structural and functional characterization of human stem-cell-derived retinal organoids by live imaging. Invest. Ophthalmol. Vis. Sci. 58, 3311–3318 (2017)
8.
go back to reference Yang, L., Yu, X., Fuller, A.M., Troester, M.A., Oldenburg, A.L.: Characterizing optical coherence tomography speckle fluctuation spectra of mammary organoids during suppression of intracellular motility. Quant. Imaging Med. Surg. 10(1), 76 (2020)CrossRef Yang, L., Yu, X., Fuller, A.M., Troester, M.A., Oldenburg, A.L.: Characterizing optical coherence tomography speckle fluctuation spectra of mammary organoids during suppression of intracellular motility. Quant. Imaging Med. Surg. 10(1), 76 (2020)CrossRef
9.
go back to reference Gan, Y., Yao, W., Myers, K.M., Hendon, C.P.: An automated 3D registration method for optical coherence tomography volumes. In: 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 3873–3876 (2014) Gan, Y., Yao, W., Myers, K.M., Hendon, C.P.: An automated 3D registration method for optical coherence tomography volumes. In: 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 3873–3876 (2014)
10.
go back to reference Kim, S., Tai, Y.: Hierarchical nonrigid model for 3D medical image registration. In: 2014 IEEE International Conference on Image Processing (ICIP), pp. 3562–3566 (2014) Kim, S., Tai, Y.: Hierarchical nonrigid model for 3D medical image registration. In: 2014 IEEE International Conference on Image Processing (ICIP), pp. 3562–3566 (2014)
11.
go back to reference Wang, L., Gao, X., Zhang, R., Xia, W.: A comparison of two novel similarity measures based on mutual information in 2D/3D image registration. In: 2013 IEEE International Conference on Medical Imaging Physics and Engineering, pp. 215–218. IEEE (2013) Wang, L., Gao, X., Zhang, R., Xia, W.: A comparison of two novel similarity measures based on mutual information in 2D/3D image registration. In: 2013 IEEE International Conference on Medical Imaging Physics and Engineering, pp. 215–218. IEEE (2013)
12.
go back to reference Huang, X., et al.: Dynamic 2D ultrasound and 3D CT image registration of the beating heart. IEEE Trans. Med. Imaging 28(8), 1179–1189 (2009)CrossRef Huang, X., et al.: Dynamic 2D ultrasound and 3D CT image registration of the beating heart. IEEE Trans. Med. Imaging 28(8), 1179–1189 (2009)CrossRef
13.
go back to reference Worz, S., Winz, M.-L., Rohr, K.: Geometric alignment of 2D gel electrophoresis images using physics-based elastic registration. In: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1135–1138. IEEE (2008) Worz, S., Winz, M.-L., Rohr, K.: Geometric alignment of 2D gel electrophoresis images using physics-based elastic registration. In: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1135–1138. IEEE (2008)
14.
go back to reference Lee, S., Lebed, E., Sarunic, M.V., Beg, M.F.: Exact surface registration of retinal surfaces from 3-D optical coherence tomography images. IEEE Trans. Biomed. Eng. 62(2), 609–617 (2015)CrossRef Lee, S., Lebed, E., Sarunic, M.V., Beg, M.F.: Exact surface registration of retinal surfaces from 3-D optical coherence tomography images. IEEE Trans. Biomed. Eng. 62(2), 609–617 (2015)CrossRef
15.
go back to reference Yang, X., Kwitt, R., Styner, M., Niethammer, M.: Quicksilver: fast predictive image registration-a deep learning approach. NeuroImage 158, 378–396 (2017)CrossRef Yang, X., Kwitt, R., Styner, M., Niethammer, M.: Quicksilver: fast predictive image registration-a deep learning approach. NeuroImage 158, 378–396 (2017)CrossRef
17.
go back to reference Appalaraju, S., Chaoji, V.: Image similarity using deep CNN and curriculum learning (2017) Appalaraju, S., Chaoji, V.: Image similarity using deep CNN and curriculum learning (2017)
18.
go back to reference Wang, J., et al.: Learning fine-grained image similarity with deep ranking. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 1386–1393 (2014) Wang, J., et al.: Learning fine-grained image similarity with deep ranking. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 1386–1393 (2014)
19.
go back to reference Fan, J., Cao, X., Xue, Z., Yap, P.-T., Shen, D.: Adversarial similarity network for evaluating image alignment in deep learning based registration. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11070, pp. 739–746. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00928-1_83CrossRef Fan, J., Cao, X., Xue, Z., Yap, P.-T., Shen, D.: Adversarial similarity network for evaluating image alignment in deep learning based registration. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11070, pp. 739–746. Springer, Cham (2018). https://​doi.​org/​10.​1007/​978-3-030-00928-1_​83CrossRef
20.
go back to reference Zhao, J., Gong, M., Liu, J., Jiao, L.: Deep learning to classify difference image for image change detection. In: 2014 International Joint Conference on Neural Networks (IJCNN), pp. 411–417. IEEE (2014) Zhao, J., Gong, M., Liu, J., Jiao, L.: Deep learning to classify difference image for image change detection. In: 2014 International Joint Conference on Neural Networks (IJCNN), pp. 411–417. IEEE (2014)
21.
go back to reference Chan, J.C.-W., Chan, K.-P., Yeh, A.G.-O.: Detecting the nature of change in an urban environment: a comparison of machine learning algorithms. Photogram. Eng. Remote Sens. 67(2), 213–226 (2001) Chan, J.C.-W., Chan, K.-P., Yeh, A.G.-O.: Detecting the nature of change in an urban environment: a comparison of machine learning algorithms. Photogram. Eng. Remote Sens. 67(2), 213–226 (2001)
Metadata
Title
Developing a Three Dimensional Registration Method for Optical Coherence Tomography Data
Authors
Bansari Vadgama
Doina Logofatu
Peter Thoma
Copyright Year
2021
DOI
https://doi.org/10.1007/978-3-030-88113-9_12

Premium Partner