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Published in: Pattern Recognition and Image Analysis 2/2021

01-04-2021 | APPLICATION PROBLEMS

Dilated Volumetric Network: an Enhanced Fully Convolutional Network for Volumetric Prostate Segmentation from Magnetic Resonance Imaging

Authors: Aman Agarwal, Aditya Mishra, Madhushree Basavarajaiah, Priyanka Sharma, Sudeep Tanwar

Published in: Pattern Recognition and Image Analysis | Issue 2/2021

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Abstract

Early detection of prostate cancer is crucial for its successful treatment. However, it is not always an easy task because of the various image capturing configurations, like acquisition protocols, magnetic field strength, presence/absence of endorectal coil, and resolution. The major bottleneck in the process is the delineation of the prostate boundary for its localization, which is required for the detection of abnormalities and performing radiotherapy accurately. Phenomenal development in Artificial Intelligence and Deep Learning has been contributing significantly to medical diagnostics using Computer Vision and the self-learning capabilities of Deep Learning has been explored to present a viable solution to automate this repetitive task of prostate segmentation. The previous approaches of 2D segmentation do not capture volumetric information and are very time consuming too. Hence, we have developed a Deep Learning based automated solution called DV-Net (Dilated Volumetric Network) for volumetric segmentation of prostate cancer. The proposed method considers the full prostate volume in 3D and requires minimal post-processing, which makes it less dependent on the type of input. We also focus on increasing the receptive field of the network and use deep supervision for better segmentation accuracy. Owing to all these features, DV-Net has shown to outperform the accuracy of the baseline V-Net model on the Prostate MR Image Segmentation (PROMISE) data set.

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Literature
1.
go back to reference J. G. E. Awad, “Prostate segmentation and regions of interest detection in transrectal ultrasound images,” PhD Thesis (Univ. of Waterloo, 2007). J. G. E. Awad, “Prostate segmentation and regions of interest detection in transrectal ultrasound images,” PhD Thesis (Univ. of Waterloo, 2007).
2.
go back to reference Yiqiang Zhan and Dinggang Shen, “Deformable segmentation of 3-D ultrasound prostate images using statistical texture matching method,” IEEE Trans. Med. Imaging 25, 256–272 (2006).CrossRef Yiqiang Zhan and Dinggang Shen, “Deformable segmentation of 3-D ultrasound prostate images using statistical texture matching method,” IEEE Trans. Med. Imaging 25, 256–272 (2006).CrossRef
3.
go back to reference L. A. Eskew, R. L. Bare, and D. L. Mccullough, “Systematic 5 region prostate biopsy is superior to sextant method for diagnosing carcinoma of the prostate,” J. Urol. 157 (1), 199–202 (1997). L. A. Eskew, R. L. Bare, and D. L. Mccullough, “Systematic 5 region prostate biopsy is superior to sextant method for diagnosing carcinoma of the prostate,” J. Urol. 157 (1), 199–202 (1997).
4.
go back to reference F. Milletari, N. Navab, and S.-A. Ahmadi, “V-Net: Fully convolutional neural networks for volumetric medical image segmentation,” in 2016 Fourth International Conference on 3D Vision (3DV) (2016), pp. 565–571. F. Milletari, N. Navab, and S.-A. Ahmadi, “V-Net: Fully convolutional neural networks for volumetric medical image segmentation,” in 2016 Fourth International Conference on 3D Vision (3DV) (2016), pp. 565–571.
5.
go back to reference E. Shelhamer, J. Long, and T. Darrell, “Fully convolutional networks for semantic segmentation,” in 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2015), pp. 3431–3440. E. Shelhamer, J. Long, and T. Darrell, “Fully convolutional networks for semantic segmentation,” in 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2015), pp. 3431–3440.
6.
go back to reference O. Ronneberger, P. Fischer, and T. Brox, “U-Net: Convolutional networks for biomedical image segmentation,” arXiv (2015). arXiv:1505.04597 [cs.CV] O. Ronneberger, P. Fischer, and T. Brox, “U-Net: Convolutional networks for biomedical image segmentation,” arXiv (2015). arXiv:1505.04597 [cs.CV]
8.
go back to reference Wanli Chen, Yue Zhang, Junjun He, Yu Qiao, Yifan Chen, Hongjian Shi, and Xiaoying Tang, “W-net: Bridged U-net for 2D medical image segmentation,” arXiv (2018). arXiv:1807.04459v1 Wanli Chen, Yue Zhang, Junjun He, Yu Qiao, Yifan Chen, Hongjian Shi, and Xiaoying Tang, “W-net: Bridged U-net for 2D medical image segmentation,” arXiv (2018). arXiv:1807.04459v1
9.
go back to reference Lequan Yu, Xin Yang, Hao Chen, Jing Qin, and Pheng-Ann Heng, “Volumetric ConvNets with mixed residual connections for automated prostate segmentation from 3D MR images,” in Thirty-First AAAI Conference on Artificial Intelligence (2017), pp. 66–72. Lequan Yu, Xin Yang, Hao Chen, Jing Qin, and Pheng-Ann Heng, “Volumetric ConvNets with mixed residual connections for automated prostate segmentation from 3D MR images,” in Thirty-First AAAI Conference on Artificial Intelligence (2017), pp. 66–72.
11.
go back to reference Manu Goyal, Moi Hoon Yap, and Saeed Hassanpour, “Multi-class semantic segmentation of skin lesions via fully convolutional networks,” arXiv (2017). arXiv:1711.10449 [cs.CV] Manu Goyal, Moi Hoon Yap, and Saeed Hassanpour, “Multi-class semantic segmentation of skin lesions via fully convolutional networks,” arXiv (2017). arXiv:1711.10449 [cs.CV]
12.
go back to reference Chen-Yu Lee, Saining Xie, P. W. Gallagher, Zhengyou Zhang, and Zhuowen Tu, “Deeply-supervised nets,” in Proceedings of the Eighteenth International Conference on Artificial Intelligence and Statistics, Ed. by Guy Lebanon and S. V. N. Vishwanathan (2015), Vol. 38, pp. 562–570. Chen-Yu Lee, Saining Xie, P. W. Gallagher, Zhengyou Zhang, and Zhuowen Tu, “Deeply-supervised nets,” in Proceedings of the Eighteenth International Conference on Artificial Intelligence and Statistics, Ed. by Guy Lebanon and S. V. N. Vishwanathan (2015), Vol. 38, pp. 562–570.
14.
go back to reference Xide Xia and Brian Kulis, “W-Net: A deep model for fully unsupervised image segmentation,” arXiv (2017). arXiv:1711.08506 [cs.CV] Xide Xia and Brian Kulis, “W-Net: A deep model for fully unsupervised image segmentation,” arXiv (2017). arXiv:1711.08506 [cs.CV]
15.
go back to reference Xin Yang, Lequan Yu, Lingyun Wu, Yi Wang, Dong Ni, Jing Qin, and Pheng-Ann Heng, “Fine-grained recurrent neural networks for automatic prostate segmentation in ultrasound images,” arxiv (2016). http://arxiv.org/abs/1612.01655. Xin Yang, Lequan Yu, Lingyun Wu, Yi Wang, Dong Ni, Jing Qin, and Pheng-Ann Heng, “Fine-grained recurrent neural networks for automatic prostate segmentation in ultrasound images,” arxiv (2016). http://​arxiv.​org/​abs/​1612.​01655.​
16.
go back to reference Ke Yan, Changyang Li, Xiuying Wang, Ang Li, Yuchen Yuan, David Dagan Feng, Mohamed Khadra, and Jinman Kim, “Automatic prostate segmentation on MR images with deep network and graph model,” in 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (2016), pp. 635–638. Ke Yan, Changyang Li, Xiuying Wang, Ang Li, Yuchen Yuan, David Dagan Feng, Mohamed Khadra, and Jinman Kim, “Automatic prostate segmentation on MR images with deep network and graph model,” in 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (2016), pp. 635–638.
18.
go back to reference M. Kirschner, F. Jung, and S. Wesarg, “Automatic prostate segmentation in MR images with a probabilistic active shape model,” in International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) (2012). M. Kirschner, F. Jung, and S. Wesarg, “Automatic prostate segmentation in MR images with a probabilistic active shape model,” in International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) (2012).
21.
go back to reference N. B. Rizvandi, A. Pizurica, and W. Philips, “Active appearance model (AAM) from theory to implementation,” in VISAPP 2008: Proceedings of the Third International Conference on Computer Vision Theory and Applications (Funchal, Madeira, Portugal, 2008), Vol. 1, pp. 539–542. N. B. Rizvandi, A. Pizurica, and W. Philips, “Active appearance model (AAM) from theory to implementation,” in VISAPP 2008: Proceedings of the Third International Conference on Computer Vision Theory and Applications (Funchal, Madeira, Portugal, 2008), Vol. 1, pp. 539–542.
22.
go back to reference F. Malmberg, R. Strand, J. Kullberg, R. Nordenskjöld, and E. Bengtsson, “Smart paint: A new interactive segmentation method applied to MR prostate segmentation,” in International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) (2012). F. Malmberg, R. Strand, J. Kullberg, R. Nordenskjöld, and E. Bengtsson, “Smart paint: A new interactive segmentation method applied to MR prostate segmentation,” in International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) (2012).
23.
go back to reference A. Gubern-Merida and R. Marti, “Atlas based segmentation of the prostate in mr images,” in MICCAI: Segmentation Challenge Workshop (2009). A. Gubern-Merida and R. Marti, “Atlas based segmentation of the prostate in mr images,” in MICCAI: Segmentation Challenge Workshop (2009).
24.
go back to reference J. Dowling, J. Fripp, P. Greer, S. Ourselin, and O. Salvado, “Automatic atlas-based segmentation of the prostate,” in A MICCAI 2009 Prostate Segmentation Challenge Entry. Workshop in Med. Image Comput. Comput. Assist. Interv. (2009), pp. 17–24. J. Dowling, J. Fripp, P. Greer, S. Ourselin, and O. Salvado, “Automatic atlas-based segmentation of the prostate,” in A MICCAI 2009 Prostate Segmentation Challenge Entry. Workshop in Med. Image Comput. Comput. Assist. Interv. (2009), pp. 17–24.
25.
go back to reference S. Ghose, O. Arnau, R. Marti, X. Lladó, J. Freixenet, J. C. Vilanova, and F. Meriaudeau, “Prostate segmentation with texture enhanced active appearance model,” in 2010 Sixth International Conference on Signal-Image Technology and Internet Based Systems (IEEE, 2010), pp. 18–22. S. Ghose, O. Arnau, R. Marti, X. Lladó, J. Freixenet, J. C. Vilanova, and F. Meriaudeau, “Prostate segmentation with texture enhanced active appearance model,” in 2010 Sixth International Conference on Signal-Image Technology and Internet Based Systems (IEEE, 2010), pp. 18–22.
26.
go back to reference Fisher Yu and Vladlen Koltun, “Multi-scale context aggregation by dilated convolutions,” arXiv (2015). arXiv:1511.07122 [cs.CV] Fisher Yu and Vladlen Koltun, “Multi-scale context aggregation by dilated convolutions,” arXiv (2015). arXiv:1511.07122 [cs.CV]
27.
go back to reference G. Litjens, R. Toth, W. van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, G. Vincent, et al., “Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 Challenge,” Med. Image Anal. 18 (2), 359–373 (2014).CrossRef G. Litjens, R. Toth, W. van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, G. Vincent, et al., “Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 Challenge,” Med. Image Anal. 18 (2), 359–373 (2014).CrossRef
28.
go back to reference S. Ioffe and C. Szegedy, “Batch normalization: Accelerating deep network training by reducing internal covariate shift,” arXiv (2015). arXiv:1502.03167 [cs.LG] S. Ioffe and C. Szegedy, “Batch normalization: Accelerating deep network training by reducing internal covariate shift,” arXiv (2015). arXiv:1502.03167 [cs.LG]
29.
go back to reference C. Szegedy, V. Vanhoucke, S. Ioffe, J. Shlens, and Z. Wojna, “Rethinking the inception architecture for computer vision,” in 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2016), pp. 2818–2826. C. Szegedy, V. Vanhoucke, S. Ioffe, J. Shlens, and Z. Wojna, “Rethinking the inception architecture for computer vision,” in 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2016), pp. 2818–2826.
30.
go back to reference J. T. Springenberg, A. Dosovitskiy, T. Brox, and M. A. Riedmiller, “Striving for simplicity: The all convolutional net,” arXiv (2014). arXiv:1412.6806 [cs.LG] J. T. Springenberg, A. Dosovitskiy, T. Brox, and M. A. Riedmiller, “Striving for simplicity: The all convolutional net,” arXiv (2014). arXiv:1412.6806 [cs.LG]
31.
go back to reference M. Drozdzal, E. Vorontsov, G. Chartrand, S. Kadoury, and C. J. Pal, “The importance of skip connections in biomedical image segmentation,” in DLMIA 2016, LABELS 2016: Deep Learning and Data Labeling for Medical Applications (2016), pp. 179–187. M. Drozdzal, E. Vorontsov, G. Chartrand, S. Kadoury, and C. J. Pal, “The importance of skip connections in biomedical image segmentation,” in DLMIA 2016, LABELS 2016: Deep Learning and Data Labeling for Medical Applications (2016), pp. 179–187.
32.
go back to reference 2009 Prostate Segmentation Challenge MICCAI (2009). http://wiki.na-mic.org/Wiki/index.php. 2009 Prostate Segmentation Challenge MICCAI (2009). http://​wiki.​na-mic.​org/​Wiki/​index.​php.​
Metadata
Title
Dilated Volumetric Network: an Enhanced Fully Convolutional Network for Volumetric Prostate Segmentation from Magnetic Resonance Imaging
Authors
Aman Agarwal
Aditya Mishra
Madhushree Basavarajaiah
Priyanka Sharma
Sudeep Tanwar
Publication date
01-04-2021
Publisher
Pleiades Publishing
Published in
Pattern Recognition and Image Analysis / Issue 2/2021
Print ISSN: 1054-6618
Electronic ISSN: 1555-6212
DOI
https://doi.org/10.1134/S1054661821020024

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