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2017 | OriginalPaper | Chapter

Exploiting Existed Medical Ontologies to Build Domain Ontology for Hepatobiliary System Diseases

Authors : Galal AL-Marzoqi, Marco Alfonse, Ibrahim F. Moawad, Mohamed Roushdy

Published in: Proceedings of the International Conference on Advanced Intelligent Systems and Informatics 2016

Publisher: Springer International Publishing

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Abstract

The Hepatobiliary System is one of the important systems in the human body. This system has the ability to regulate the other systems. It may be affected by many pathologic conditions, which affect other organs negatively. Additionally, it plays an important role in many body functions like protein production. In this paper, we exploited the existed Ontologies in the medical domain to build a new Hepatobiliary System Diseases (HSD) Ontology. The Ontology has been built by using the BioPortal system to find the correct candidate Ontologies. This Ontology was developed in pathology domain and represented in the Web Ontology Language (OWL) that has recently become the standard language for the semantic web. The HSD Ontology development methodology includes five phases: HSD Query Extraction phase, Ontology Selection phase, Ontology Mapping and Partitioning phase, Adding Knowledge phase, and Ontology Merging and Validation phase. By developing the HSD Ontology in pathology domain, both intelligent systems and physicians can share, reason, and exploit this knowledge in different ways.

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Literature
1.
go back to reference Bright, T.J., Furuya, E.Y., Kuperman, G.J., Cimino, J.J., Bakken, S.: Development and evaluation of an ontology for guiding appropriate antibiotic prescribing. J. Biomed. Inf. (2011) Bright, T.J., Furuya, E.Y., Kuperman, G.J., Cimino, J.J., Bakken, S.: Development and evaluation of an ontology for guiding appropriate antibiotic prescribing. J. Biomed. Inf. (2011)
2.
go back to reference Sánchez, D., Moreno, A.: Learning medical ontologies from the web. In: Riaño, D. (ed.) K4CARE 2007. LNCS (LNAI), vol. 4924, pp. 32–45. Springer, Heidelberg (2008)CrossRef Sánchez, D., Moreno, A.: Learning medical ontologies from the web. In: Riaño, D. (ed.) K4CARE 2007. LNCS (LNAI), vol. 4924, pp. 32–45. Springer, Heidelberg (2008)CrossRef
3.
go back to reference Cicortas, A., Iordan, V.S., Fortis, A.E.: Considerations on construction ontologies. J. Ann. Comput. Sci. Ser. 1, 79–88 (2009) Cicortas, A., Iordan, V.S., Fortis, A.E.: Considerations on construction ontologies. J. Ann. Comput. Sci. Ser. 1, 79–88 (2009)
4.
go back to reference Smith, B., Ceusters, W., Klagges, B., Köhler, J., Kumar, A., Lomax, J., Mungall, C., Neuhaus, F., Rector, A.L., Rosse, C.: Relations in biomedical ontologies. Genome Biol. 6 (2005) Smith, B., Ceusters, W., Klagges, B., Köhler, J., Kumar, A., Lomax, J., Mungall, C., Neuhaus, F., Rector, A.L., Rosse, C.: Relations in biomedical ontologies. Genome Biol. 6 (2005)
5.
go back to reference Bail, S., Horridge, M., Parsia, B., Sattler, U.: The justificatory structure of the NCBO BioPortal ontologies. In: Aroyo, L., Welty, C., Alani, H., Taylor, J., Bernstein, A., Kagal, L., Noy, N., Blomqvist, E. (eds.) ISWC 2011. LNCS, vol. 7031, pp. 67–82. Springer, Heidelberg (2011). doi:10.1007/978-3-642-25073-6_5 CrossRef Bail, S., Horridge, M., Parsia, B., Sattler, U.: The justificatory structure of the NCBO BioPortal ontologies. In: Aroyo, L., Welty, C., Alani, H., Taylor, J., Bernstein, A., Kagal, L., Noy, N., Blomqvist, E. (eds.) ISWC 2011. LNCS, vol. 7031, pp. 67–82. Springer, Heidelberg (2011). doi:10.​1007/​978-3-642-25073-6_​5 CrossRef
6.
go back to reference Noy, N.F. Shah, N.H., Whetzel, P.L. et al.: BioPortal: ontologies and integrated data resources at the click of a mouse. In: International Conference on Biomedical Ontology (ICBO), 24 July 2009 Noy, N.F. Shah, N.H., Whetzel, P.L. et al.: BioPortal: ontologies and integrated data resources at the click of a mouse. In: International Conference on Biomedical Ontology (ICBO), 24 July 2009
7.
go back to reference Seongwook, Y., Anchit, A., Preetham, C., Paavany, J., Ashish, M., Shikha, S.: Survey about ontology development tools for ontology-based knowledge management. University of Southern California (2009) Seongwook, Y., Anchit, A., Preetham, C., Paavany, J., Ashish, M., Shikha, S.: Survey about ontology development tools for ontology-based knowledge management. University of Southern California (2009)
8.
go back to reference Thirugnanam, M., Ramaiah, M., Pattabiraman, V., Sivakumar, R.: Ontology based disease information system. In: International Conference on Modelling Optimization and Computing, pp. 3235–3241 (2012) Thirugnanam, M., Ramaiah, M., Pattabiraman, V., Sivakumar, R.: Ontology based disease information system. In: International Conference on Modelling Optimization and Computing, pp. 3235–3241 (2012)
10.
go back to reference Galal, A.L., Marzoqi, M.A., Ibrahim, F., Moawad, M.R.: A survey on applying ontological engineering approach for hepatobiliary system diseases. In: International Conference on Information Technology (ICIT), pp. 370–375, Egypt (2015) Galal, A.L., Marzoqi, M.A., Ibrahim, F., Moawad, M.R.: A survey on applying ontological engineering approach for hepatobiliary system diseases. In: International Conference on Information Technology (ICIT), pp. 370–375, Egypt (2015)
11.
go back to reference Alfonse, M., Aref, M.M., Salem, A.-B.M.: Ontology-based knowledge representation for liver cancer. In: Proceedings of the International eHealth, Telemedicine and Health ICT Forum for Educational, Networking and Business. Luxembourg, G. D. Luxembourg, ISSN 1818 -9334, pp. 821–825, 18–20 April 2012 Alfonse, M., Aref, M.M., Salem, A.-B.M.: Ontology-based knowledge representation for liver cancer. In: Proceedings of the International eHealth, Telemedicine and Health ICT Forum for Educational, Networking and Business. Luxembourg, G. D. Luxembourg, ISSN 1818 -9334, pp. 821–825, 18–20 April 2012
12.
go back to reference Kozaki, K., Kou, H., Yamagata, Y., Imai, T., Ohe, K., Mizoguchi, R.: Browsing casual chain in a disease ontology. In: International Semantic Web Conference (Posters & Demos)’12 (2012) Kozaki, K., Kou, H., Yamagata, Y., Imai, T., Ohe, K., Mizoguchi, R.: Browsing casual chain in a disease ontology. In: International Semantic Web Conference (Posters & Demos)’12 (2012)
13.
go back to reference Moawad, I.F., Marzoqi, G.A.L., Salem, A.-B.M.: Building OBR-based OWL ontology for viral hepatitis. In: Proceeding of Med-e-Tel, pp. 821–825. Luxembourg (2012) Moawad, I.F., Marzoqi, G.A.L., Salem, A.-B.M.: Building OBR-based OWL ontology for viral hepatitis. In: Proceeding of Med-e-Tel, pp. 821–825. Luxembourg (2012)
14.
go back to reference Martinez-Romero, M., Vazquez-Naya, J.M., Pereira, J., Pazos, A.: BiOSS: A system for biomedical ontology selection. Comput. Methods Programs Biomed. 114, 125–140 (2014) Martinez-Romero, M., Vazquez-Naya, J.M., Pereira, J., Pazos, A.: BiOSS: A system for biomedical ontology selection. Comput. Methods Programs Biomed. 114, 125–140 (2014)
15.
go back to reference Boon, N.A., Colledge, N.R., Walker, B.R.: Davidson’s Principles & Practice of Medicine, 20th edn., pp. 935–994 (2006) Boon, N.A., Colledge, N.R., Walker, B.R.: Davidson’s Principles & Practice of Medicine, 20th edn., pp. 935–994 (2006)
21.
go back to reference Uschold, M., Gruninger, M.: Ontologies: principles, methods and applications. Knowl. Eng. Rev. 11 (1996) Uschold, M., Gruninger, M.: Ontologies: principles, methods and applications. Knowl. Eng. Rev. 11 (1996)
Metadata
Title
Exploiting Existed Medical Ontologies to Build Domain Ontology for Hepatobiliary System Diseases
Authors
Galal AL-Marzoqi
Marco Alfonse
Ibrahim F. Moawad
Mohamed Roushdy
Copyright Year
2017
DOI
https://doi.org/10.1007/978-3-319-48308-5_77

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