Top

Published in:

2020 | OriginalPaper | Chapter

10. Functional Diversity of Plant Endophytes and Their Role in Assisted Phytoremediation

Authors : Angélica Leonor Guerrero-Zúñiga, Eugenia López-López, Aída Verónica Rodríguez-Tovar, Angélica Rodríguez-Dorantes

Published in: Bioremediation of Industrial Waste for Environmental Safety

Publisher: Springer Singapore

Activate our intelligent search to find suitable subject content or patents.

search-config

AI-assisted search

Off

Abstract

The functional diversity term helps to understand the biological complexity through the wide range of interactions that organisms show on communities and ecosystems as they may interact. In a particular manner, organisms may have attributes or characteristics that define their role within the ecosystems. The purpose of this review is to analyze the importance of plant growth-promoting traits of endophyte bacteria that define the functional diversity of them in their relationships with plants in assisted phytoremediation techniques.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

über 102.000 Bücher
über 537 Zeitschriften

aus folgenden Fachgebieten:

Automobil + Motoren
Bauwesen + Immobilien
Business IT + Informatik
Elektrotechnik + Elektronik
Energie + Nachhaltigkeit
Finance + Banking
Management + Führung
Marketing + Vertrieb
Maschinenbau + Werkstoffe
Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

inform now

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

über 67.000 Bücher
über 390 Zeitschriften

aus folgenden Fachgebieten:

Automobil + Motoren
Bauwesen + Immobilien
Business IT + Informatik
Elektrotechnik + Elektronik
Energie + Nachhaltigkeit
Maschinenbau + Werkstoffe

Jetzt Wissensvorsprung sichern!

inform now

previous chapter Microbial Fuel Cell (MFC): An Innovative Technology for Wastewater Treatment and Power Generation

next chapter Toxic Metals in Industrial Wastewaters and Phytoremediation Using Aquatic Macrophytes for Environmental Pollution Control: An Eco-Remedial Approach

Ahmad F, Ahmad I, Khan MS (2008) Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiol Res 163:173–181CrossRef

Atlas RM, Bartha R (1993) Microbial ecology fundamentals and applications, 3rd edn. Benjamin Cummings Publishing, New York

Babu AG, Shea PJ, Sudhakar D, Jung IB, Oh BT (2015) Potential use of Pseudomonas koreensis AGB-1 in association with Miscanthus sinensis to remediate heavy metal(loid)-contaminated mining site soil. J Environ Manag 151:160–166CrossRef

Bano N, Musarrat J (2003) Characterization of a new Pseudomonas aeruginosa strain NJ-15 as a potential biocontrol agent. Curr Microbiol l46:324–328CrossRef

Barea JM, Pozo M, Azcón R, Azcón-Aguilar C (2005) Microbial co-operation in the rhizosphere. J Exp Bot 56:1761–1778CrossRef

Becerra-Castro C, Monterroso C, Prieto-Fernández A, Rodríguez-Lamas L, Loureiro-Viñas M, Acea MJ, Kidd PS (2012) Pseudometallophytes colonizing Pb/Zn mine tailings: a description of the plant-microorganism-rhizosphere soil system and isolation of metal-tolerant bacteria. J Hazard Mater 217–218:350–359CrossRef

Becerra-Castro C, Kidd P, Kuffner M, Prieto-Fernández A, Hann S, Monterroso C, Sessitsch A, Wenzel A, Puschenreiter M (2013) Bacterially induced weathering of ultramafic rock and its implications for phytoextraction. Appl Environ Microbiol 79:5094–5103CrossRef

Boruvka L, Vacek O, Jehlicka J (2005) Principal component analysis as a tool to indicate the origin of potentially toxic elements in soils. Geoderma 128:289–300CrossRef

Botta-Dukát Z (2005) Rao’s quadratic entropy as a measure of functional diversity based on multiple traits. J Veg Sci 16:533–540CrossRef

Cabello-Conejo MI, Becerra-Castro C, Prieto-Fernández A, Monterroso C, Saavedra-Ferro A, Mench M, Kidd PS (2014) Rhizobacterial inoculants can improve nickel phytoextraction by the hyperaccumulator Alyssum pintodasilvae. Plant Soil 379:35–50CrossRef

Cattelan AJ, Hartel PG, Furhmann FF (1999) Screening for plant growth promoting rhizobacteria to promote early soybean growth. Soil Sci Soc Am J 63:1670–1680CrossRef

Cederlund H, Thierfelder T, Stenströma J (2008) Functional microbial diversity of the railway track bed. Sci Total Environ 397:205–214CrossRef

Chapin FSI, Bret-Harte MS, Hobbie SE, Hailan Z (1996) Plant functional types as predictors of transient responses of arctic vegetation to global change. J Veg Sci 7:347–358CrossRef

Charudattan R (1991) The mycoherbicide approach with plant pathogens. In: Te Beast DO (ed) Microbial control of weeds. Chapman and Hall, New York, pp 24–57CrossRef

Chen L, Luo SL, Li XJ, Wan Y, Chen JL, Liu CB (2014) Interaction of Cd hyperaccumulator Solanum nigrum L. and functional endophyte Pseudomonas sp. Lk9 on soil heavy metals uptake. Soil Biol Biochem 68:300–308CrossRef

Compant S, Clément C, Sessitsch A (2010) Plant growth-promoting bacteria in therhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42:669–678CrossRef

Dharni S, Srivastava AK, Samad A, Patra DD (2014) Impact of plant growth promoting Pseudomonas monteilii PsF84 and Pseudomonas plecoglossicidas F610 on metal uptake and production of secondary metabolite (monoterpenes) by rose-scented geranium (Pelargonium graveolens cv. bourbon) grown on tannery sludge amended soil. Chemosphere 117:433–439CrossRef

Díaz S, Cabido M (1997) Plant functional types and ecosystem function in relation to global change. J Veg Sci 8:463–474CrossRef

Flaishman MA, Eyal Z, Zilberstein A, Voisard C, Hass D (1996) Suppression of Septoria tritici blotch and leaf rust of wheat by recombinant cyanide-producing strains of Pseudomonas putida. Mol Plant-Microbe Interact 9:642–645CrossRef

Fonseca CR, Ganade G (2001) Species functional redundancy, random extinctions and the stability of ecosystems. J Ecol 89:118–125CrossRef

Frankenberger WT Jr, Arshad M (1995) Phytohormones in soil: microbial production and function. Marcel Dekker, New York

Gadd GM (2004) Microbial influence on metal mobility and application for bioremediation. Geoderma 122:109–119CrossRef

Gadd GM (2005) Microorganisms in toxic metal polluted soils. In: Buscot F, Varma A (eds) Microorganisms in soils: roles in genesis and functions. Springer, Berlin, pp 325–356CrossRef

Gadd GM (2010) Metals: minerals and microbes: geomicrobiology and bioremediation. Microbiology 156:609–643CrossRef

Garcia de Salamon IE, Hynes RK, Nelson LM (2001) Cytokinin production by plant growth promoting rhizobacteria and selected mutants. Can J Microbiol 47:404–411CrossRef

Glick BR (1995) The enhancement of plant growth by free-living bacteria. Can J Microbiol 41:109–117CrossRef

Glick BR (2010) Using soil bacteria to facilitate phytoremediation. Biotechnol Adv 28:367–374CrossRef

Glick BR (2014) Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiol Res 169:30–39CrossRef

Glick BR, Karaturovic DM, Newell PC (1995) A novel procedure for rapid isolation of plant growth promoting pseudomonas. Can J Microbiol 41:533–536CrossRef

Göhre V, Paszkowski U (2006) Contribution of the arbuscular mycorrhizal symbiosis to heavy metal phytoremediation. Planta 223:1115–1122CrossRef

Griffiths BS, Ritz K, Bardgett RD, Cook R, Christensen S, Ekelund F, Sørensen SJ, Bååth E, Bloem J, De Ruiter PC, Dolfing J, Nicolardot B (2000) Ecosystem response of pasture soil communities to fumigation-induced microbial diversity reductions: an examination of the biodiversity–ecosystem function relationship. Oikos 90:279–294CrossRef

Griffiths BS, Ritz K, Wheatley R, Kuan HL, Boag B, Christensen S, Ekelund F, Sørensen SJ, Muller S, Bloem J (2001) An examination of the biodiversity–ecosystem function relationship in arable soil microbial communities. Soil Biol Biochem 33:1713–1722CrossRef

Guiffre L, Romaniuk R, Conti ME, Bartoloni N (2006) Multivariate evaluation by quality indicators of no-tillage system in Argiudolls of rolling pampa (Argentina). Biol Fertil Soils 42:556–560CrossRef

He H, Ye Z, Yang D, Yan J, Xiao L, Zhong T, Yuan M, Cai X, Fang Z, Jing Y (2013) Characterization of endophytic Rahnella sp. JN6 from Polygonum pubescens and its potential in promoting growth and Cd, Pb, Zn uptake by Brassica napus. Chemosphere 90:1960–1965CrossRef

Hector A, Schmid B, Beierkuhnlein C, Caldeira MC, Diemer M, Dimitrakopoulos PG, Finn JA, Freitas H, Giller PS, Good J, Harris R, Högberg P, Huss-Danell K, Joshi J, Jumpponen A, Körner C, Leadley PW, Loreau M, Minns A, Mulder CPH, O’Donovan G, Otway SJ, Pereira JS, Prinz A, Read DJ, Scherer-Lorenzen M, Schulze ED, Siamantziouras ASD, Spehn EM, Terry AC, Troumbis AY, Woodward FI, Yachi S, Lawton JH (1999) Plant diversity and productivity experiments in European grassland. Science 286:1123–1127CrossRef

Hooper DU (1998) The role of complementarity and competition in ecosystem responses to variation in plant diversity. Ecology 79:704–719CrossRef

Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJM (2001) Minireview: counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67:4399–4406CrossRef

Kebede YK, Kebedee T (2012) Application of principal component analysis in surface water quality monitoring. In: Sanguansat P.(Ed.), Principal component analysis – engineering applications. In Tech

Khan AG (2005) Role of soil microbes in the rhizospheres of plants growing on trace metal contaminated soils in phytoremediation. J Trace Elem Med Biol 18:355–364CrossRef

Khan MS, Zaidi A, Aamil M (2002) Biocontrol of fungal pathogens by the use of plant growth promoting rhizobacteria and nitrogen fixing microorganisms. Indian J Bot Soc 81:255–263

Khan MS, Zaidi A, Wani PA, Ahemad M, Oves M (2009) Functional diversity among plant growth-promoting rhizobacteria: current status. In: Khan MS (ed) Microbial strategies for crop improvement. Springer, Berlin/HeidelbergCrossRef

Kidd P, Barcelo J, Bernal MP, Navari-Izzo F, Poschenrieder C, Shilev S, Rafael C, Monterroso C (2009) Trace element behaviour at the root-soil interface: implications in phytoremediation. Environ Exp Bot 67:243–259CrossRef

Kirk JL, Beaudette LA, Hart M, Moutoglis P, Klironomos JN, Lee H, Trevors JA (2004) Methods of studying soil microbial diversity. J Microbiol Meth 58:169–188CrossRef

Kloepper JW, Schroth MN (1978) Plant growth-promoting rhizobacteria on radishes. Fourth International Conference on Plant Pathogen Bacteria, Angers, France, Vol 2. pp 879–882

Kremer RJ, Begonia MFT, Lynn S, Lanham ET (1990) Characterization of rhizobacteria associated with weed seedlings. Appl Environ Microbiol 56:1646–1655

Lebeau T, Braud A, Jezequel K (2008) Performance of bioaugmentation-assisted phytoextraction applied to metal contaminated soils: a review. Environ Pollut 153:497–522CrossRef

Leishman MR, Westoby M (1992) Classifying plants into groups on the basis of associations of individual traits - evidence from Australian semi-arid woodlands. J Ecol 80:417–424CrossRef

Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63:541–556CrossRef

Luo SL, Chen L, Chen JL, Xiao X, Xu TY, Wan Y, Rao C, Liu C, Liu Y, Lai C, Zeng GM (2011) Analysis and characterization of cultivable heavy metal-resistant bacterial endophytes isolated from Cd-hyperaccumulator Solanum nigrum L. and their potential use for phytoremediation. Chemosphere 85:1130–1138CrossRef

Ma Y, Rajkumar M, Luo YM, Freitas H (2011) Inoculation of endophytic bacteria on host and non-host plants e effects on plant growth and Ni uptake. J Hazard Mater 195:230–237CrossRef

Ma Y, Oliveira RS, Nai FJ, Rajkumar M, Luo YM, Rocha I, Freitas H (2015a) The hyperaccumulator Sedum plumbizincicola harbors metal-resistant endophytic bacteria that improve its phytoextraction capacity in multi-metal contaminated soil. J Environ Manag 156:62–69CrossRef

Ma Y, Rajkumar M, Rocha I, Oliveira RS, Freitas H (2015b) Serpentine bacteria influence metal translocation and bioconcentration of Brassica juncea and Ricinus communis grown in multi-metal polluted soils. Front Plant Sci 5:1–13CrossRef

Ma Y, Rajkumar M, Zhang C, Freitas H (2016) Beneficial role of bacterial endophytes in heavy metal phytoremediation. J Environ Manag 174:14–25CrossRef

Mahmoud SAZ, Ramadan EM, Thabet FM, Khater T (1984) Production of plant growth promoting substances by rhizosphere microorganisms. Zbl Mikrobiol 139:227–232

Maropola MK, Ramond JB, Trindade M (2015) Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench). J Microbiol Methods 112:104–117CrossRef

Mason NWH, MacGillivray K, Steel JB, Wilson JB (2003) An index of functional diversity. J Veg Sci 14:571–578CrossRef

Muehe EM, Weigold P, Adaktylou IJ, Planer-Friedrich B, Kraemer U, Kappler A, Behrens S (2015) Rhizosphere microbial community composition affects cadmium and zinc uptake of the metal-hyperaccumulating plant Arabidopsis halleri. Appl Environ Microbiol 81:2173–2181CrossRef

Naeem S, Li S (1997) Biodiversity enhances ecosystem reliability. Nature 390:507–509CrossRef

Naik RP, Sakthivel N (2006) Functional characterization of a novel hydrocarbonoclastic Pseudomonas sp. strain PUP6 with plant-growth-promoting traits and antifungal potential. Res Microbiol 157:538–546CrossRef

Naik PR, Raman G, Narayanan KB, Sakthivel N (2008) Assessment of genetic and functional diversity of phosphate solubilizing fluorescent pseudomonads isolated from rhizospheric soil. BMC Microbiol 8:230CrossRef

Ortega-Acosta O (2015) Análisis de la diversidad funcional de fitobacterias de plantas de Lemna gibba presente en tres sitios contrastantes del Sistema lacustre de Xochimilco. Tesis de Maestría. Escuela Nacional de CienciasBiológicas, InstitutoPolitécnico Nacional, Ciudad de México, México

Ortega-Acosta O, Rodriguez-Tovar AV, López-López E, Rodríguez-Dorantes A (2015) Characterization of indole acetic acid endophyte producers in authoctonus Lemna gibba plants from Xochimilco Lake. Afr J Biotechnol 14:604–611

O’Sullivan DJ, O’Hara F (1992) Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol Rev 56:662–676

Ovreas L (2000) Population and community level approaches for analyzing microbial diversity in natural environments. Ecol Lett 3:236–251CrossRef

Pace NR (1997) A molecular view of microbial diversity and the biosphere. Science 276:734–740CrossRef

Petchey OL, Gaston KJ (2002a) Functional diversity (FD), species richness and community composition. Ecol Lett 5:402–411CrossRef

Petchey OL, Gaston KJ (2002b) Extinction and the loss of functional diversity. Proc R Soc Lond Ser B Biol Sci 269:1721–1727CrossRef

Petchey OL, Gaston KJ (2006) Functional diversity: back to basics and looking forward. Ecol Lett 9:741–775CrossRef

Phetcharat P, Duangpaeng A (2012) Screening of endophytic bacteria from organic rice tissue for indole acetic acid production. Procedia Eng 32:177–183CrossRef

Ramamoorthy V, Viswanathan R, Raguchander T, Prakasam V, Samiyappan R (2001) Induction of systemic resistance by plant growth promoting rhizobacteria in crop plants against pests and diseases. Crop Prot 20:1–11CrossRef

Rastetter EB, Gough L, Hartley AE, Herbert DA, Nadelhoffer KJ, Williams M (1999) A revised assessment of species redundancy and ecosystem reliability. Conserv Biol 13:440–443CrossRef

Renwick A, Campbell R, Coe S (1991) Assessment of in vivo screening systems for potential biocontrol agents of Gaeumannomyces graminis. Plant Pathol 40:524–532CrossRef

Ricotta C (2005) A note on functional diversity measures. Basic Appl Ecol 6:479–486CrossRef

Roscher C, Schumacher J, Baade J, Wilcke W, Gleixner G, Weisser WW, Schmid B, Schulze ED (2004) The role of biodiversity for element cycling and trophic interactions: and experimental approach in a grassland community. Basic Appl Ecol 5:107–112CrossRef

Schulz B, Boyle C (2006) What are endophytes? In: Schulz BJE, Boyle CIC, Sieber TN (eds) Microbial root endophytes. Springer, Berlin, pp 1–13CrossRef

Sessitsch A, Kuffner M, Kidd P, Vangronsveld J, Wenzel WW, Fallmann K, Puschenreiter M (2013) The role of plant-associated bacteria in the mobilization and phytoextraction of trace elements in contaminated soils. Soil Biol Biochem 60:182–194CrossRef

Shanahan P, O’Sullivan DJ, Simpson P, Glennon JD, O’Gara F (1992) Isolation of 2, 4- diacetylphloroglucinol from a fluorescent pseudomonad and investigation of physiological parameters influencing its production. Appl Environ Microbiol 58:353–358

Sharma M, Mishra V, Rau N, RSH S (2011a) Functionally diverse rhizobacteria of Saccharum munja (a native wild grass) colonizing abandoned morrum mine in Aravalli hills (Delhi). Plant Soil 341:447–459CrossRef

Sharma SK, Johri BN, Ramesh A, Joshi OP, Sai Prasad SV (2011b) Selection of plant growth-promoting Pseudomonas spp. that enhanced productivity of soybean-wheat cropping system in Central India. J Microbiol Biotechnol 21:1127–1142CrossRef

Shukla MK, Lal R, Ebinger M (2004) Principal component analysis for predicting corn biomass and grain yield. Soil Sci 169:215–224CrossRef

Sokal RR, Sneath PH (1973) Principles of numerical taxonomy. W.H. Freeman and Company, San Francisco

Somers E, Vanderleyden J, Srinivasan M (2004) Rhizosphere bacterial signaling: a love parade beneath our feet. Crit Rev Microbiol 30:205–240CrossRef

Stevens RD, Cox SB, Strauss RE, Willig MR (2003) Patterns of functional diversity across an extensive environmental gradient: vertebrate consumers, hidden treatments and latitudinal trends. Ecol Lett 6:1099–1108CrossRef

Sunishkumar R, Ayyadurai N, Pandiaraja P, Reddy AV, Venkateswarlu Y, Prakash O, Sakthivel N (2005) Characterization of antifungal metabolite produced by a new strain Pseudomonas aeruginosa PUPa3 that exhibits broad-spectrum antifungal activity and biofertilizing traits. J Appl Microbiol 98:145–154CrossRef

Tilman D (2001) Functional diversity. In: Levin SA (ed) Encyclopaedia of biodiversity. Academic Press, San Diego, pp 109–120CrossRef

Tilman D, Reich PB, Knops J, Wedin D, Mielke T, Lehman CL (2001) Diversity and productivity in a long-term grassland experiment. Science 294:843–845CrossRef

Trevors JT (1998) Bacterial biodiversity in soil with an emphasis on chemically-contaminated soils. Water Air Soil Pollut 101:45–67CrossRef

Ullah A, Heng S, Farooq M, Munis H, Fahad S, Yang X (2015) Phytoremediation of heavy metals assisted by plant growth promoting (PGP) bacteria: a review. Environ Exp Bot 117:28–40CrossRef

Villegas J, Fortin JA (2001) Phosphorus solubilization and pH changes as a result of the interactions between soil bacteria and arbuscular mycorrhizal fungi on a medium containing NO₃as nitrogen source. Can J Bot 80:571–576CrossRef

Visioli G, D’Egidio S, Vamerali T, Mattarozzi M, Sanangelantoni AM (2014) Culturable endophytic bacteria enhance Ni translocation in the hyperaccumulator Noccaea caerulescens. Chemosphere 117:538–544CrossRef

Walker B, Kinzig A, Langridge J (1999) Plant attribute diversity, resilience, and ecosystem function: the nature and significance of dominant and minor species. Ecosystems 2:95–113CrossRef

Wani PA, Khan MS, Zaidi A (2007a) Synergistic effects of the inoculation with nitrogen fixing and phosphate-solubilizing rhizobacteria on the performance of field grown chickpea. J Plant Nutr Soil Sci 170:283–287CrossRef

Wani PA, Khan MS, Zaidi A (2007b) Chromium reduction, plant growth promoting potentials and metal solubilization by Bacillus sp. isolated from alluvial soil. Curr Microbio l54:237–243CrossRef

Wani PA, Khan MS, Zaidi A (2007c) Co inoculation of nitrogen fixing and phosphate solubilizing bacteria to promote growth, yield and nutrient uptake in chickpea. Acta Agron Hung 55:315–323CrossRef

Wertz S, Degrange V, Jl P, Poly F, Commeaux C, Freitag T, Guillaumaud N, Le Roux J (2006) Maintenance of soil functioning following erosion of microbial diversity. Environ Microbiol 8:2162–2169CrossRef

Yan-de J, Zhen-li H, Xiao-e Y (2007) Role of soil rhizobacteria in phytoremediation of heavy metal contaminated soils. J Zhejiang Univ Sci B8:192–207

Zaidi A (1999) Synergistic interactions of nitrogen fixing microorganisms with phosphate mobilizing microorganisms. PhD thesis, Aligarh Muslim University, Aligarh

Zak JC, Willig MR, Moorhead DL, Wildman HG (1994) Functional diversity of microbial communities. Soil Biol Biochem 26:1101–1108CrossRef

Zheng YK, Qiao XG, Miao CP, Liu K, Chen YW, Xu LH, Zhao LX (2016) Diversity, distribution and biotechnological potential of endophytic fungi. Ann Microbiol 66:529–542CrossRef

Title: Functional Diversity of Plant Endophytes and Their Role in Assisted Phytoremediation
Authors: Angélica Leonor Guerrero-Zúñiga
Eugenia López-López
Aída Verónica Rodríguez-Tovar
Angélica Rodríguez-Dorantes
Publisher: Springer Singapore
Book: Bioremediation of Industrial Waste for Environmental Safety
Print ISBN: 978-981-13-3425-2

Electronic ISBN: 978-981-13-3426-9

Copyright Year: 2020
DOI: https://doi.org/10.1007/978-981-13-3426-9_10