Skip to main content
Top

2014 | OriginalPaper | Chapter

Kernel-Based Morphometry of Diffusion Tensor Images

Authors : Madhura Ingalhalikar, Parmeshwar Khurd, Ragini Verma

Published in: Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data

Publisher: Springer Berlin Heidelberg

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

Voxel-based group-wise statistical analysis of diffusion tensor imaging (DTI) is an integral component in most population-based neuroimaging studies such as those studying brain development during infancy or aging, or those investigating structural differences between healthy and diseased populations. The majority of studies using DTI limit themselves by testing only certain properties of the tensor that mainly include anisotropy and diffusivity. However, the pathology under study may affect other aspects like the orientation information provided by the tensors. Therefore, for detecting subtle pathological changes it is important to perform group-wise testing on the whole tensor, which encompasses the changes in anisotropy, diffusivity and orientation. This is rendered challenging by the fact that conventional linear statistics cannot be applied to tensors. Moreover, the pathology over the population is unknown and could be non-linear, further complicating the group-based statistical analysis. This chapter gives a perspective on performing voxel-wise morphometry of tensor data using kernel-based approach. The method is referred as Kernel-based morphometry (KBM) as it models the tensor distribution using kernel principal component analysis (kPCA), which linearizes the data in high dimensional space. Subsequently a Hotelling T 2 test is performed on the high dimensional kernelized data to determine statistical group differences. We apply this method on simulated and real datasets and show that KBM can effectively identify the underlying tensorial distribution. Thus it can potentially elucidate pathology-induced population differences, thereby establishing a kernelized full tensor framework for population studies.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Appendix
Available only for authorised users
Literature
1.
go back to reference Alexander, A.L., Lee, J.E., Lazar, M., Boudos, R., DuBray, M.B., Oakes, T.R., Miller, J.N., Lu, J., Jeong, E.K., McMahon, W.M., Bigler, E.D., Lainhart, J.E.: Diffusion tensor imaging of the corpus callosum in autism. Neuroimage 34, 61–73 (2007)CrossRef Alexander, A.L., Lee, J.E., Lazar, M., Boudos, R., DuBray, M.B., Oakes, T.R., Miller, J.N., Lu, J., Jeong, E.K., McMahon, W.M., Bigler, E.D., Lainhart, J.E.: Diffusion tensor imaging of the corpus callosum in autism. Neuroimage 34, 61–73 (2007)CrossRef
2.
go back to reference Ardekani, B.A., Tabesh, A., Sevy, S., Robinson, D.G., Bilder, R.M., Szeszko, P.R.: Diffusion tensor imaging reliably differentiates patients with schizophrenia from healthy volunteers. Hum. Brain. Mapp. 32, 1–9 (2011)CrossRef Ardekani, B.A., Tabesh, A., Sevy, S., Robinson, D.G., Bilder, R.M., Szeszko, P.R.: Diffusion tensor imaging reliably differentiates patients with schizophrenia from healthy volunteers. Hum. Brain. Mapp. 32, 1–9 (2011)CrossRef
3.
go back to reference Arsigny, V., Fillard, P., Pennec, X., Ayache, N.: Log-Euclidean metrics for fast and simple calculus on diffusion tensors. Magn. Reson. Med. 56, 411–421 (2006)CrossRef Arsigny, V., Fillard, P., Pennec, X., Ayache, N.: Log-Euclidean metrics for fast and simple calculus on diffusion tensors. Magn. Reson. Med. 56, 411–421 (2006)CrossRef
4.
go back to reference Ashburner, J., Friston, K.J.: Voxel-based morphometry–the methods. Neuroimage 11, 805–821 (2000)CrossRef Ashburner, J., Friston, K.J.: Voxel-based morphometry–the methods. Neuroimage 11, 805–821 (2000)CrossRef
5.
go back to reference Barnea-Goraly, N., Kwon, H., Menon, V., Eliez, S., Lotspeich, L., Reiss, A.L.: White matter structure in autism: preliminary evidence from diffusion tensor imaging. Biol. Psychiatry 55, 323–326 (2004)CrossRef Barnea-Goraly, N., Kwon, H., Menon, V., Eliez, S., Lotspeich, L., Reiss, A.L.: White matter structure in autism: preliminary evidence from diffusion tensor imaging. Biol. Psychiatry 55, 323–326 (2004)CrossRef
6.
go back to reference Basser, P.J., Pierpaoli, C.: Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor mri. J. Magn. Reson. B 111, 209–219 (1996)CrossRef Basser, P.J., Pierpaoli, C.: Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor mri. J. Magn. Reson. B 111, 209–219 (1996)CrossRef
7.
go back to reference Baudat, G., Anouar, F.: Generalized discriminant analysis using a kernel approach. Neural Comput. 12, 2385–2404 (2000)CrossRef Baudat, G., Anouar, F.: Generalized discriminant analysis using a kernel approach. Neural Comput. 12, 2385–2404 (2000)CrossRef
8.
go back to reference Behrens, T.E.J., Berg, H.J., Jbabdi, S., Rushworth, M.F.S., Woolrich, M.W.: Probabilistic diffusion tractography with multiple fibre orientations: what can we gain? Neuroimage 34, 144–155 (2007)CrossRef Behrens, T.E.J., Berg, H.J., Jbabdi, S., Rushworth, M.F.S., Woolrich, M.W.: Probabilistic diffusion tractography with multiple fibre orientations: what can we gain? Neuroimage 34, 144–155 (2007)CrossRef
9.
go back to reference Benjamini, Y., Drai, D., Elmer, G., Kafkafi, N., Golani, I.: Controlling the false discovery rate in behavior genetics research. Behav. Brain. Res. 125, 279–284 (2001)CrossRef Benjamini, Y., Drai, D., Elmer, G., Kafkafi, N., Golani, I.: Controlling the false discovery rate in behavior genetics research. Behav. Brain. Res. 125, 279–284 (2001)CrossRef
10.
go back to reference Burges, C.: Data mining and knowledge discovery handbook. Kluwer, New York (2005) Burges, C.: Data mining and knowledge discovery handbook. Kluwer, New York (2005)
11.
go back to reference Calamante, F., Masterton, R.A.J., Tournier, J.D., Smith, R.E., Willats, L., Raffelt, D., Connelly, A.: Track-weighted functional connectivity (TW-FC): a tool for characterizing the structural-functional connections in the brain. Neuroimage 70, 199–210 (2013)CrossRef Calamante, F., Masterton, R.A.J., Tournier, J.D., Smith, R.E., Willats, L., Raffelt, D., Connelly, A.: Track-weighted functional connectivity (TW-FC): a tool for characterizing the structural-functional connections in the brain. Neuroimage 70, 199–210 (2013)CrossRef
12.
go back to reference Cao, Y., Miller, M., Mori, S., Winslow, R.: Diffeomorphic matching of diffusion tensor images. In: Proceedings of CVPR-MMBIA, New York (2006) Cao, Y., Miller, M., Mori, S., Winslow, R.: Diffeomorphic matching of diffusion tensor images. In: Proceedings of CVPR-MMBIA, New York (2006)
13.
go back to reference Field, A.S., Alexander, A.L.: Diffusion tensor imaging in cerebral tumor diagnosis and therapy. Top. Magn. Reson. Imaging 15, 315–324 (2004)CrossRef Field, A.S., Alexander, A.L.: Diffusion tensor imaging in cerebral tumor diagnosis and therapy. Top. Magn. Reson. Imaging 15, 315–324 (2004)CrossRef
14.
go back to reference Fletcher, T., Joshi, S.: Riemannian geometry for the statistical analysis of diffusion tensor data. Signal Process. 87(2), 250–262 (2007)CrossRefMATH Fletcher, T., Joshi, S.: Riemannian geometry for the statistical analysis of diffusion tensor data. Signal Process. 87(2), 250–262 (2007)CrossRefMATH
15.
go back to reference Fletcher, T., Lu, C., Pizer, S., Joshi, S.: Principal geodesic analysis for the study of nonlinear statistics of shape. IEEE Trans. Med. Imaging 23, 995–1005 (2004)CrossRef Fletcher, T., Lu, C., Pizer, S., Joshi, S.: Principal geodesic analysis for the study of nonlinear statistics of shape. IEEE Trans. Med. Imaging 23, 995–1005 (2004)CrossRef
16.
go back to reference Fletcher, P.T., Whitaker, R.T., Tao, R., DuBray, M.B., Froehlich, A., Ravichandran, C., Alexander, A.L., Bigler, E.D., Lange, N., Lainhart, J.E.: Microstructural connectivity of the arcuate fasciculus in adolescents with high-functioning autism. Neuroimage 51, 1117–1125 (2010)CrossRef Fletcher, P.T., Whitaker, R.T., Tao, R., DuBray, M.B., Froehlich, A., Ravichandran, C., Alexander, A.L., Bigler, E.D., Lange, N., Lainhart, J.E.: Microstructural connectivity of the arcuate fasciculus in adolescents with high-functioning autism. Neuroimage 51, 1117–1125 (2010)CrossRef
17.
go back to reference Genovese, C.R., Lazar, N.A., Nichols, T.: Thresholding of statistical maps in functional neuroimaging using the false discovery rate. Neuroimage 15, 870–878 (2002)CrossRef Genovese, C.R., Lazar, N.A., Nichols, T.: Thresholding of statistical maps in functional neuroimaging using the false discovery rate. Neuroimage 15, 870–878 (2002)CrossRef
18.
go back to reference Girolami, M.: Orthogonal series density estimation and the kernel eigenvalue problem. Neural Comput. 14, 669–688 (2002)CrossRefMATH Girolami, M.: Orthogonal series density estimation and the kernel eigenvalue problem. Neural Comput. 14, 669–688 (2002)CrossRefMATH
19.
go back to reference Hagmann, P., Cammoun, L., Gigandet, X., Meuli, R., Honey, C.J., Wedeen, V.J., Sporns, O.: Mapping the structural core of human cerebral cortex. PLoS Biol 6, e159 (2008)CrossRef Hagmann, P., Cammoun, L., Gigandet, X., Meuli, R., Honey, C.J., Wedeen, V.J., Sporns, O.: Mapping the structural core of human cerebral cortex. PLoS Biol 6, e159 (2008)CrossRef
20.
go back to reference Hagmann, P., Sporns, O., Madan, N., Cammoun, L., Pienaar, R., Wedeen, V.J., Meuli, R., Thiran, J.P., Grant, P.E.: White matter maturation reshapes structural connectivity in the late developing human brain. Proc. Natl. Acad. Sci. U S A 107, 19067–19072 (2010)CrossRef Hagmann, P., Sporns, O., Madan, N., Cammoun, L., Pienaar, R., Wedeen, V.J., Meuli, R., Thiran, J.P., Grant, P.E.: White matter maturation reshapes structural connectivity in the late developing human brain. Proc. Natl. Acad. Sci. U S A 107, 19067–19072 (2010)CrossRef
21.
go back to reference Ingalhalikar, M., Parker, D., Bloy, L., Roberts, T.P.L., Verma, R.: Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD. Neuroimage 57, 918–927 (2011)CrossRef Ingalhalikar, M., Parker, D., Bloy, L., Roberts, T.P.L., Verma, R.: Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD. Neuroimage 57, 918–927 (2011)CrossRef
22.
go back to reference Ingalhalikar, M., Yang, J., Davatzikos, C., Verma, R.: DTI-DROID: Diffusion tensor imaging-deformable registration using orientation and intensity descriptors. Int. J. Imaging Syst. Technol. 20(2), 99–107 (2010)CrossRef Ingalhalikar, M., Yang, J., Davatzikos, C., Verma, R.: DTI-DROID: Diffusion tensor imaging-deformable registration using orientation and intensity descriptors. Int. J. Imaging Syst. Technol. 20(2), 99–107 (2010)CrossRef
23.
go back to reference Keller, T.A., Kana, R.K., Just, M.A.: A developmental study of the structural integrity of white matter in autism. Neuroreport 18, 23–27 (2007)CrossRef Keller, T.A., Kana, R.K., Just, M.A.: A developmental study of the structural integrity of white matter in autism. Neuroreport 18, 23–27 (2007)CrossRef
24.
go back to reference Khurd, P., Verma, R., Davatzikos, C.: Kernel-based manifold learning for statistical analysis of diffusion tensor images. Inf. Process. Med. Imaging 20, 581–593 (2007)CrossRef Khurd, P., Verma, R., Davatzikos, C.: Kernel-based manifold learning for statistical analysis of diffusion tensor images. Inf. Process. Med. Imaging 20, 581–593 (2007)CrossRef
25.
go back to reference Kubicki, M., Westin, C.F., McCarley, R.W., Shenton, M.E.: The application of DTI to investigate white matter abnormalities in schizophrenia. Ann. N Y Acad. Sci. 1064, 134–148 (2005)CrossRef Kubicki, M., Westin, C.F., McCarley, R.W., Shenton, M.E.: The application of DTI to investigate white matter abnormalities in schizophrenia. Ann. N Y Acad. Sci. 1064, 134–148 (2005)CrossRef
26.
go back to reference Lenglet, C., Rousson, M., Deriche, R., Faugeras, O.: Statistics on the manifold of multivariate normal distributions: theory and application to diffusion tensor MRI processing. J. Math. Imaging Vis. 25(3), 423–444 (2006)CrossRefMathSciNet Lenglet, C., Rousson, M., Deriche, R., Faugeras, O.: Statistics on the manifold of multivariate normal distributions: theory and application to diffusion tensor MRI processing. J. Math. Imaging Vis. 25(3), 423–444 (2006)CrossRefMathSciNet
27.
go back to reference Li, Y., Zhu, H., Y, C., Ibrahim, J., An, H., Lin, W., Hall, C., Shen, D.: Radti: regression analyses of diffusion tensor images. In: SPIE Conference Proceedings, Dresden (2009) Li, Y., Zhu, H., Y, C., Ibrahim, J., An, H., Lin, W., Hall, C., Shen, D.: Radti: regression analyses of diffusion tensor images. In: SPIE Conference Proceedings, Dresden (2009)
28.
go back to reference Lim, K.O., Hedehus, M., Moseley, M., de Crespigny, A., Sullivan, E.V., Pfefferbaum, A.: Compromised white matter tract integrity in schizophrenia inferred from diffusion tensor imaging. Arch. Gen. Psychiatry 56, 367–374 (1999)CrossRef Lim, K.O., Hedehus, M., Moseley, M., de Crespigny, A., Sullivan, E.V., Pfefferbaum, A.: Compromised white matter tract integrity in schizophrenia inferred from diffusion tensor imaging. Arch. Gen. Psychiatry 56, 367–374 (1999)CrossRef
29.
go back to reference Nimsky, C., Ganslandt, O., Hastreiter, P., Wang, R., Benner, T., Sorensen, A.G., Fahlbusch, R.: Preoperative and intraoperative diffusion tensor imaging-based fiber tracking in glioma surgery. Neurosurgery 56, 130–7 (2005). Discussion 138 Nimsky, C., Ganslandt, O., Hastreiter, P., Wang, R., Benner, T., Sorensen, A.G., Fahlbusch, R.: Preoperative and intraoperative diffusion tensor imaging-based fiber tracking in glioma surgery. Neurosurgery 56, 130–7 (2005). Discussion 138
30.
go back to reference Park, H.J., Westin, C.F., Kubicki, M., Maier, S.E., Niznikiewicz, M., Baer, A., Frumin, M., Kikinis, R., Jolesz, F.A., McCarley, R.W., Shenton, M.E.: White matter hemisphere asymmetries in healthy subjects and in schizophrenia: a diffusion tensor MRI study. Neuroimage 23, 213–223 (2004)CrossRef Park, H.J., Westin, C.F., Kubicki, M., Maier, S.E., Niznikiewicz, M., Baer, A., Frumin, M., Kikinis, R., Jolesz, F.A., McCarley, R.W., Shenton, M.E.: White matter hemisphere asymmetries in healthy subjects and in schizophrenia: a diffusion tensor MRI study. Neuroimage 23, 213–223 (2004)CrossRef
31.
32.
go back to reference Pierpaoli, C., Jezzard, P., Basser, P., Barnett, A.: Diffusion tensor MR imaging of the human brain. Radiology 201, 637 (1996)CrossRef Pierpaoli, C., Jezzard, P., Basser, P., Barnett, A.: Diffusion tensor MR imaging of the human brain. Radiology 201, 637 (1996)CrossRef
33.
go back to reference Scholkopf, B., Smola, A.: Learning with Kernels. MIT, Cambridge (2002) Scholkopf, B., Smola, A.: Learning with Kernels. MIT, Cambridge (2002)
34.
go back to reference Schwartzman, A., Dougherty, R.F., Taylor, J.E.: Cross-subject comparison of principal diffusion direction maps. Magn. Reson. Med. 53, 1423–1431 (2005)CrossRef Schwartzman, A., Dougherty, R.F., Taylor, J.E.: Cross-subject comparison of principal diffusion direction maps. Magn. Reson. Med. 53, 1423–1431 (2005)CrossRef
35.
go back to reference Schwartzman, A., Dougherty, R.F., Taylor, J.E.: Group comparison of eigenvalues and eigenvectors of diffusion tensors. J. Am. Stat. Assoc. 105(490), 588–599 (2010)CrossRefMathSciNet Schwartzman, A., Dougherty, R.F., Taylor, J.E.: Group comparison of eigenvalues and eigenvectors of diffusion tensors. J. Am. Stat. Assoc. 105(490), 588–599 (2010)CrossRefMathSciNet
36.
go back to reference Shen, D., Davatzikos, C.: HAMMER: hierarchical attribute matching mechanism for elastic registration. IEEE Trans. Med. Imaging 21, 1421–1439 (2002)CrossRef Shen, D., Davatzikos, C.: HAMMER: hierarchical attribute matching mechanism for elastic registration. IEEE Trans. Med. Imaging 21, 1421–1439 (2002)CrossRef
37.
go back to reference Smith, S.M., Jenkinson, M., Johansen-Berg, H., Rueckert, D., Nichols, T.E., Mackay, C.E., Watkins, K.E., Ciccarelli, O., Cader, M.Z., Matthews, P.M., Behrens, T.E.J.: Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data. Neuroimage 31, 1487–1505 (2006)CrossRef Smith, S.M., Jenkinson, M., Johansen-Berg, H., Rueckert, D., Nichols, T.E., Mackay, C.E., Watkins, K.E., Ciccarelli, O., Cader, M.Z., Matthews, P.M., Behrens, T.E.J.: Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data. Neuroimage 31, 1487–1505 (2006)CrossRef
38.
go back to reference van den Heuvel, M.P., Mandl, R.C.W., Kahn, R.S., Hulshoff Pol, H.E.: Functionally linked resting-state networks reflect the underlying structural connectivity architecture of the human brain. Hum. Brain Mapp. 30, 3127–3141 (2009)CrossRef van den Heuvel, M.P., Mandl, R.C.W., Kahn, R.S., Hulshoff Pol, H.E.: Functionally linked resting-state networks reflect the underlying structural connectivity architecture of the human brain. Hum. Brain Mapp. 30, 3127–3141 (2009)CrossRef
39.
go back to reference Verhoeven, J.S., Cock, P.D., Lagae, L., Sunaert, S.: Neuroimaging autism. Neuroradiology 52, 3–14 (2010)CrossRef Verhoeven, J.S., Cock, P.D., Lagae, L., Sunaert, S.: Neuroimaging autism. Neuroradiology 52, 3–14 (2010)CrossRef
40.
go back to reference Verma, R., Khurd, P., Davatzikos, C.: On analyzing diffusion tensor images by identifying manifold structure using isomaps. IEEE Trans. Med. Imaging 26, 772–778 (2007)CrossRef Verma, R., Khurd, P., Davatzikos, C.: On analyzing diffusion tensor images by identifying manifold structure using isomaps. IEEE Trans. Med. Imaging 26, 772–778 (2007)CrossRef
42.
go back to reference Wu, Y.C., Field, A.S., Chung, M.K., Badie, B., Alexander, A.L.: Quantitative analysis of diffusion tensor orientation: theoretical framework. Magn. Reson. Med. 52, 1146–1155 (2004)CrossRef Wu, Y.C., Field, A.S., Chung, M.K., Badie, B., Alexander, A.L.: Quantitative analysis of diffusion tensor orientation: theoretical framework. Magn. Reson. Med. 52, 1146–1155 (2004)CrossRef
43.
go back to reference Xu, D., Hao, X., Bansal, R., Plessen, K.J., Peterson, B.S.: Seamless warping of diffusion tensor fields. IEEE Trans. Med. Imaging 27, 285–299 (2008)CrossRef Xu, D., Hao, X., Bansal, R., Plessen, K.J., Peterson, B.S.: Seamless warping of diffusion tensor fields. IEEE Trans. Med. Imaging 27, 285–299 (2008)CrossRef
44.
go back to reference Xu, D., Mori, S., Shen, D., van Zijl, P.C.M., Davatzikos, C.: Spatial normalization of diffusion tensor fields. Magn. Reson. Med. 50, 175–182 (2003)CrossRef Xu, D., Mori, S., Shen, D., van Zijl, P.C.M., Davatzikos, C.: Spatial normalization of diffusion tensor fields. Magn. Reson. Med. 50, 175–182 (2003)CrossRef
45.
go back to reference Yang, J., Frangi, A.F., Yang, J.Y., Zhang, D., Jin, Z.: KPCA plus LDA: a complete kernel fisher discriminant framework for feature extraction and recognition. IEEE Trans. Pattern Anal. Mach. Intell. 27, 230–244 (2005)CrossRef Yang, J., Frangi, A.F., Yang, J.Y., Zhang, D., Jin, Z.: KPCA plus LDA: a complete kernel fisher discriminant framework for feature extraction and recognition. IEEE Trans. Pattern Anal. Mach. Intell. 27, 230–244 (2005)CrossRef
46.
go back to reference Zhang, H., Yushkevich, P.A., Alexander, D.C., Gee, J.C.: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med. Image Anal. 10, 764–785 (2006)CrossRef Zhang, H., Yushkevich, P.A., Alexander, D.C., Gee, J.C.: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med. Image Anal. 10, 764–785 (2006)CrossRef
Metadata
Title
Kernel-Based Morphometry of Diffusion Tensor Images
Authors
Madhura Ingalhalikar
Parmeshwar Khurd
Ragini Verma
Copyright Year
2014
Publisher
Springer Berlin Heidelberg
DOI
https://doi.org/10.1007/978-3-642-54301-2_10

Premium Partner