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2019 | OriginalPaper | Chapter

Left Ventricle Segmentation and Quantification from Cardiac Cine MR Images via Multi-task Learning

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Abstract

Segmentation of the left ventricle and quantification of various cardiac contractile functions is crucial for the timely diagnosis and treatment of cardiovascular diseases. Traditionally, the two tasks have been tackled independently. Here we propose a convolutional neural network based multi-task learning approach to perform both tasks simultaneously, such that, the network learns better representation of the data with improved generalization performance. Probabilistic formulation of the problem enables learning the task uncertainties during the training, which are used to automatically compute the weights for the tasks. We performed a five fold cross-validation of the myocardium segmentation obtained from the proposed multi-task network on 97 patient 4-dimensional cardiac cine-MRI datasets available through the STACOM LV segmentation challenge against the provided gold-standard myocardium segmentation, obtaining a Dice overlap of \(0.849 \pm 0.036\) and mean surface distance of \(0.274 \pm 0.083\) mm, while simultaneously estimating the myocardial area with mean absolute difference error of \(205\pm 198\,\mathrm{mm}^2\).

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Literature
1.
go back to reference Petitjean, C., Dacher, J.N.: A review of segmentation methods in short axis cardiac MR images. Med. Image Anal. 15(2), 169–184 (2011)CrossRef Petitjean, C., Dacher, J.N.: A review of segmentation methods in short axis cardiac MR images. Med. Image Anal. 15(2), 169–184 (2011)CrossRef
2.
go back to reference LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436–444 (2015)CrossRef LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436–444 (2015)CrossRef
3.
go back to reference Shen, D., Wu, G., Suk, H.I.: Deep learning in medical image analysis. Ann. Rev. Biomed. Eng. 19, 221–248 (2017)CrossRef Shen, D., Wu, G., Suk, H.I.: Deep learning in medical image analysis. Ann. Rev. Biomed. Eng. 19, 221–248 (2017)CrossRef
4.
go back to reference Litjens, G., et al.: A survey on deep learning in medical image analysis. Med. Image Anal. 42, 60–88 (2017)CrossRef Litjens, G., et al.: A survey on deep learning in medical image analysis. Med. Image Anal. 42, 60–88 (2017)CrossRef
5.
go back to reference Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: The IEEE Conference on CVPR, June 2015 Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: The IEEE Conference on CVPR, June 2015
6.
go back to reference Garcia-Garcia, A., Orts-Escolano, S., Oprea, S., Villena-Martinez, V., Rodríguez, J.G.: A review on deep learning techniques applied to semantic segmentation. CoRR abs/1704.06857 (2017) Garcia-Garcia, A., Orts-Escolano, S., Oprea, S., Villena-Martinez, V., Rodríguez, J.G.: A review on deep learning techniques applied to semantic segmentation. CoRR abs/1704.06857 (2017)
7.
go back to reference Ronneberger, O., Fischer, P., Brox, T.: U-net: Convolutional networks for biomedical image segmentation. CoRR abs/1505.04597 (2015) Ronneberger, O., Fischer, P., Brox, T.: U-net: Convolutional networks for biomedical image segmentation. CoRR abs/1505.04597 (2015)
9.
go back to reference Xue, W., Islam, A., Bhaduri, M., Li, S.: Direct multitype cardiac indices estimation via joint representation and regression learning. IEEE Trans. Med. Imaging 36(10), 2057–2067 (2017)CrossRef Xue, W., Islam, A., Bhaduri, M., Li, S.: Direct multitype cardiac indices estimation via joint representation and regression learning. IEEE Trans. Med. Imaging 36(10), 2057–2067 (2017)CrossRef
10.
go back to reference Xue, W., Brahm, G., Pandey, S., Leung, S., Li, S.: Full left ventricle quantification via deep multitask relationships learning. Med. Image Anal. 43, 54–65 (2018)CrossRef Xue, W., Brahm, G., Pandey, S., Leung, S., Li, S.: Full left ventricle quantification via deep multitask relationships learning. Med. Image Anal. 43, 54–65 (2018)CrossRef
11.
go back to reference Fonseca, C.G., et al.: The cardiac atlas project - an imaging database for computational modeling and statistical atlases of the heart. Bioinformatics 27(16), 2288–2295 (2011)CrossRef Fonseca, C.G., et al.: The cardiac atlas project - an imaging database for computational modeling and statistical atlases of the heart. Bioinformatics 27(16), 2288–2295 (2011)CrossRef
12.
go back to reference Suinesiaputra, A., et al.: A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Med. Image Anal. 18(1), 50–62 (2014)CrossRef Suinesiaputra, A., et al.: A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Med. Image Anal. 18(1), 50–62 (2014)CrossRef
13.
go back to reference Yaniv, Z., Lowekamp, B.C., Johnson, H.J., Beare, R.: SimpleITK image-analysis notebooks: a collaborative environment for education and reproducible research. J. Digit. Imaging 31, 290–303 (2017)CrossRef Yaniv, Z., Lowekamp, B.C., Johnson, H.J., Beare, R.: SimpleITK image-analysis notebooks: a collaborative environment for education and reproducible research. J. Digit. Imaging 31, 290–303 (2017)CrossRef
14.
go back to reference Kendall, A., Gal, Y.: What uncertainties do we need in Bayesian deep learning for computer vision? In: Guyon, I., et al. (eds.) Advances in Neural Information Processing Systems 30, pp. 5574–5584. Curran Associates, Inc. (2017) Kendall, A., Gal, Y.: What uncertainties do we need in Bayesian deep learning for computer vision? In: Guyon, I., et al. (eds.) Advances in Neural Information Processing Systems 30, pp. 5574–5584. Curran Associates, Inc. (2017)
15.
go back to reference Kendall, A., Gal, Y., Cipolla, R.: Multi-task learning using uncertainty to weigh losses for scene geometry and semantics. CoRR abs/1705.07115 (2017) Kendall, A., Gal, Y., Cipolla, R.: Multi-task learning using uncertainty to weigh losses for scene geometry and semantics. CoRR abs/1705.07115 (2017)
16.
go back to reference He, K., Zhang, X., Ren, S., Sun, J.: Delving deep into rectifiers: surpassing human-level performance on imagenet classification. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1026–1034 (2015) He, K., Zhang, X., Ren, S., Sun, J.: Delving deep into rectifiers: surpassing human-level performance on imagenet classification. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1026–1034 (2015)
17.
go back to reference Lin, M., Lucas Jr., H.C., Shmueli, G.: Research commentary - too big to fail: large samples and the p-value problem. Inf. Syst. Res. 24(4), 906–917 (2013)CrossRef Lin, M., Lucas Jr., H.C., Shmueli, G.: Research commentary - too big to fail: large samples and the p-value problem. Inf. Syst. Res. 24(4), 906–917 (2013)CrossRef
Metadata
Title
Left Ventricle Segmentation and Quantification from Cardiac Cine MR Images via Multi-task Learning
Authors
Shusil Dangi
Ziv Yaniv
Cristian A. Linte
Copyright Year
2019
DOI
https://doi.org/10.1007/978-3-030-12029-0_3

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