Skip to main content
Top

2018 | OriginalPaper | Chapter

Optimized Machine Learning Methods Predict Discourse Segment Type in Biological Research Articles

Authors : Jessica Cox, Corey A. Harper, Anita de Waard

Published in: Semantics, Analytics, Visualization

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

To define salient rhetorical elements in scholarly text, we have earlier defined a set of Discourse Segment Types: semantically defined spans of discourse at the level of a clause with a single rhetorical purpose, such as Hypothesis, Method or Result. In this paper, we use machine learning methods to predict these Discourse Segment Types in a corpus of biomedical research papers. The initial experiment used features related to verb type and form, obtaining F-scores ranging from 0.41–0.65. To improve our results, we explored a variety of methods for balancing classes, before applying classification algorithms. We also performed an ablation study and stepwise approach for feature selection. Through these feature selection processes, we were able to reduce our 37 features to the 9 most informative ones, while maintaining F1 scores in the range of 0.63–0.65. Next, we performed an experiment with a reduced set of target classes. Using only verb tense features, logistic regression, a decision tree classifier and a random forest classifier, we predicted that a segment type was either a Result/Method or a Fact/Implication, with F1 scores above 0.8. Interestingly, findings from this machine learning approach are in line with a reader experiment, which found a correlation between verb tense and a biomedical reader’s interpretation of discourse segment type. This suggests that experimental and concept-centric discourse in biology texts can be distinguished by humans or machines, using verb tense as a key feature.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Appendix
Available only for authorised users
Literature
2.
go back to reference Dasigi, P., Burns, G.A.P.C., Hovy, E.H., de Waard, A.: Experiment segmentation in scientific discourse as clause-level structured prediction using recurrent neural networks. arXiv preprint arXiv:1702.05398. https://arxiv.org/abs/1702.05398 (2017) Dasigi, P., Burns, G.A.P.C., Hovy, E.H., de Waard, A.: Experiment segmentation in scientific discourse as clause-level structured prediction using recurrent neural networks. arXiv preprint arXiv:1702.05398. https://​arxiv.​org/​abs/​1702.​05398 (2017)
4.
go back to reference de Waard, A., Pander Maat, H.: Verb form indicates discourse segment type in biological research papers: experimental evidence. J. Engl. Acad. Purp. 11(4), 357–366 (2012)CrossRef de Waard, A., Pander Maat, H.: Verb form indicates discourse segment type in biological research papers: experimental evidence. J. Engl. Acad. Purp. 11(4), 357–366 (2012)CrossRef
5.
go back to reference de Waard, A., Buitelaar, P., Eigner, T.: Identifying the epistemic value of discourse segments in biology texts. In: Bunt, H., Petukhova, V., Wubben, S. (eds.) Proceedings of the Eighth International Conference on Computational Semantics (IWCS-8 2009), pp. 351–354. Association for Computational Linguistics, Stroudsburg (2009) de Waard, A., Buitelaar, P., Eigner, T.: Identifying the epistemic value of discourse segments in biology texts. In: Bunt, H., Petukhova, V., Wubben, S. (eds.) Proceedings of the Eighth International Conference on Computational Semantics (IWCS-8 2009), pp. 351–354. Association for Computational Linguistics, Stroudsburg (2009)
9.
go back to reference Liakata, M., Thomson, P., de Waard, A., et al.: A three-way perspective on scientific discourse annotation for knowledge extraction. In: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics, pp. 37–46, Jeju, Republic of Korea, 12 July 2012 (2012). http://www.aclweb.org/anthology/W12–4305 Liakata, M., Thomson, P., de Waard, A., et al.: A three-way perspective on scientific discourse annotation for knowledge extraction. In: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics, pp. 37–46, Jeju, Republic of Korea, 12 July 2012 (2012). http://​www.​aclweb.​org/​anthology/​W12–4305
11.
go back to reference Ratner, A., Bach, S.H., Ehrenberg, H., Fries, J., Wu, S., Ré, C.: Snorkel: rapid training data creation with weak supervision. Proc. VLDB Endow. 11(3), 269–282 (2017)CrossRef Ratner, A., Bach, S.H., Ehrenberg, H., Fries, J., Wu, S., Ré, C.: Snorkel: rapid training data creation with weak supervision. Proc. VLDB Endow. 11(3), 269–282 (2017)CrossRef
12.
go back to reference de Waard, A., Pander Maat, H.: Epistemic modality and knowledge attribution in scientific discourse: a taxonomy of types and overview of features. In Proceedings of the Workshop on Detecting Structure in Scholarly Discourse (ACL 2012), pp. 47–55. Association for Computational Linguistics, Stroudsburg, PA, USA (2012). https://dl.acm.org/citation.cfm?id=2391180 de Waard, A., Pander Maat, H.: Epistemic modality and knowledge attribution in scientific discourse: a taxonomy of types and overview of features. In Proceedings of the Workshop on Detecting Structure in Scholarly Discourse (ACL 2012), pp. 47–55. Association for Computational Linguistics, Stroudsburg, PA, USA (2012). https://​dl.​acm.​org/​citation.​cfm?​id=​2391180
Metadata
Title
Optimized Machine Learning Methods Predict Discourse Segment Type in Biological Research Articles
Authors
Jessica Cox
Corey A. Harper
Anita de Waard
Copyright Year
2018
DOI
https://doi.org/10.1007/978-3-030-01379-0_7