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Remarks on Invariant Method of the Second-Order Linear Differential Equations with Variable Coefficients Read chapter Read first chapter

2013 | OriginalPaper | Chapter

Petri Net Modeling and Analysis Based on Gene Logic Network

Authors : Yulin Zhang, Shudong Wang, Hongyue Wu, Yan Yi

Published in: Proceedings of The Eighth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA), 2013

Publisher: Springer Berlin Heidelberg

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Abstract

Petri net has recently emerged as a promising tool for the modeling and analysis of molecular networks. In this research, gene logic network constructed by approach-logic analysis of phylogenetic profiles method is described. In order to depict the logic interactions between genes, a new Petri net formalism with augmented inhibitor arc is proposed, which is called ALTPN. Two different types of places and different transitions are formulated in ALTPN, and then corresponding firing rule is given. Further, ALTPN of all 1-order and 2-order gene logic types are listed. Finally reachability graph method is used to accomplish asynchronous dynamic analysis of gene logic interactions in colon cancer and some conclusions are drawn.

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previous chapter Computation of Synchronic Distance in Marked S-net
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Metadata
Title
Petri Net Modeling and Analysis Based on Gene Logic Network
Authors
Yulin Zhang
Shudong Wang
Hongyue Wu
Yan Yi
Copyright Year
2013
Publisher
Springer Berlin Heidelberg
Book
Proceedings of The Eighth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA), 2013

Print ISBN: 978-3-642-37501-9

Electronic ISBN: 978-3-642-37502-6

Copyright Year: 2013

DOI
https://doi.org/10.1007/978-3-642-37502-6_46

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