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2016 | OriginalPaper | Chapter

Physically-Based Simulation and Web Visualization of C. elegans Behavioural Experiments

Authors : Andoni Mujika, Gorka Epelde, Peter Leškovský, David Oyarzun

Published in: Advances in Neurotechnology, Electronics and Informatics

Publisher: Springer International Publishing

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Abstract

This paper presents the work done in the framework of the Si elegans project to develop the physics engine for the simulation of the roundworm Caenorhabditis elegans and the interfaces to define and visualize behavioural experiments of the worm. The physically-based simulation of the locomotion of the worm is guided by a biomechanical model, based on anatomically matched biphasic springs. The simulation is presented via an experiment visualization web, using a 3D motion reproduction obtained through animation bones. This web also displays information about the activation in muscles and neurons, on additional information panels. Finally, an experiment definition portal has been developed where, by means of a timeline, the user can easily design complex experimental assays.

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Metadata
Title
Physically-Based Simulation and Web Visualization of C. elegans Behavioural Experiments
Authors
Andoni Mujika
Gorka Epelde
Peter Leškovský
David Oyarzun
Copyright Year
2016
DOI
https://doi.org/10.1007/978-3-319-26242-0_2