Skip to main content
Top
Published in:
Cover of the book

2013 | OriginalPaper | Chapter

1. “Plant Cell Wall Structure-Pretreatment” the Critical Relationship in Biomass Conversion to Fermentable Sugars

Author : Ahmed Faik

Published in: Green Biomass Pretreatment for Biofuels Production

Publisher: Springer Netherlands

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

One of the targeted research areas in implementing alternative renewable energy production is the improvement of the yield and quality of plant biomass, which consists mostly of plant cell walls (called lignocellulosic biomass). Sugars from plant biomass can be used to produce bioethanol through fermentation, but can also be used to make other hydrocarbons via direct pyrolysis or gasification. However, the conversion of lignocellulosic biomass to fermentable sugars is far from optimal due to the lack of efficient pretreatment processes, simply because the exact composition and the manner in which different cell wall components interact between each other strongly influence energy recovery. Pretreatment techniques can be grouped into three distinct categories: physical (mechanical), biological, and chemical pretreatments. Currently, pretreatment step is the most costly step in the whole process of biofuel production, and there is a positive correlation between cell walls recalcitrance and the costs in biofuel production. Because there are many different kinds of plant biomass, no single pretreatment method is expected to be the preferred universal choice. Furthermore, there is recurring debate about “food or fuel” balance, and the emerging picture from this debate is that there is a need for domestication of several feedstock crops, because none of the current available feedstock crops have all the requirements to balance our food and fuel needs. The ultimate goal is to elucidate the key structural elements of lignocellulosic biomass that would allow a balance between biofuel production, carbon sequestration, and land management. This chapter will describe the composition and structural aspects of plant cell walls found in plant biomasses, and their impact on pretreatment of biomass.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Literature
go back to reference Alder PR, Del Grosso SJ, Parton WJ (2007) Life cycle assessment of net greenhouse gas flux for bioenergy cropping systems. Ecol Appl 17:675–691 Alder PR, Del Grosso SJ, Parton WJ (2007) Life cycle assessment of net greenhouse gas flux for bioenergy cropping systems. Ecol Appl 17:675–691
go back to reference Alizadeh H, Teymouri F, Gilbert TI, Dale BE (2005) Pretreatment of switchgrass by ammonia fiber explosion (AFEX). Appl Biochem Biotechnol 121:1133–1141 Alizadeh H, Teymouri F, Gilbert TI, Dale BE (2005) Pretreatment of switchgrass by ammonia fiber explosion (AFEX). Appl Biochem Biotechnol 121:1133–1141
go back to reference Araujo GS, Matos LJ, Gonçalves LR, Fernandes FA, Farias WR (2011) Bioprospecting for oil producing microalgal strains: evaluation of oil and biomass production for ten microalgal strains. Bioresour Technol 102:5248–5250 Araujo GS, Matos LJ, Gonçalves LR, Fernandes FA, Farias WR (2011) Bioprospecting for oil producing microalgal strains: evaluation of oil and biomass production for ten microalgal strains. Bioresour Technol 102:5248–5250
go back to reference Atalla RH, Hackney JM, Uhlin I, Thompson NS (1993) Hemicelluloses as structure regulators in the aggregation of native cellulose. Int J Biol Macromol 15:109–112 Atalla RH, Hackney JM, Uhlin I, Thompson NS (1993) Hemicelluloses as structure regulators in the aggregation of native cellulose. Int J Biol Macromol 15:109–112
go back to reference Aziz S, Sarkanen K (1989) Organosolv pulping-a review. Tappi J 72:169–175 Aziz S, Sarkanen K (1989) Organosolv pulping-a review. Tappi J 72:169–175
go back to reference Bayer EA, Shimon LJ, Shoham Y, Lamed R (1998) Cellulosomes-structure and ultrastructure. J Struct Biol 124:221–234 Bayer EA, Shimon LJ, Shoham Y, Lamed R (1998) Cellulosomes-structure and ultrastructure. J Struct Biol 124:221–234
go back to reference Besombes S, Mazeau K (2005) The cellulose/lignin assembly assessed by molecular modeling. Part 2: seeking for evidence of organization of lignin molecules at the interface with cellulose. Plant Physiol Biochem 43:277–286 Besombes S, Mazeau K (2005) The cellulose/lignin assembly assessed by molecular modeling. Part 2: seeking for evidence of organization of lignin molecules at the interface with cellulose. Plant Physiol Biochem 43:277–286
go back to reference Binder B, Raines RT (2009) Simple chemical transformation of lignocellulosic biomass into furans for fuels and chemicals. J Am Chem Soc 131:1979–1985 Binder B, Raines RT (2009) Simple chemical transformation of lignocellulosic biomass into furans for fuels and chemicals. J Am Chem Soc 131:1979–1985
go back to reference Blumer-Schuette SE, Kataeva I, Westpheling J, Adams MW, Kelly RM (2008) Extremely thermophilic microorganisms for biomass conversion: status and prospects. Curr Opin Biotechnol 19:210–217 Blumer-Schuette SE, Kataeva I, Westpheling J, Adams MW, Kelly RM (2008) Extremely thermophilic microorganisms for biomass conversion: status and prospects. Curr Opin Biotechnol 19:210–217
go back to reference Boerjan W, Ralph J, Baucher M (2003) Lignin biosynthesis. Annu Rev Plant Biol 54:519–546 Boerjan W, Ralph J, Baucher M (2003) Lignin biosynthesis. Annu Rev Plant Biol 54:519–546
go back to reference Brat D, Boles E, Wiedemann B (2009) Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae. Appl Environ Microbiol 75:2304–2311 Brat D, Boles E, Wiedemann B (2009) Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae. Appl Environ Microbiol 75:2304–2311
go back to reference Brosse N, Sannigrahi P, Ragauskas A (2009) Pretreatment of Miscanthus x giganteus using the ethanol organosolv process for ethanol production. Ind Eng Chem Res 48:8328–8334 Brosse N, Sannigrahi P, Ragauskas A (2009) Pretreatment of Miscanthus x giganteus using the ethanol organosolv process for ethanol production. Ind Eng Chem Res 48:8328–8334
go back to reference Brown RM Jr, Saxena IM, Kudlicka K (1996) Cellulose biosynthesis in higher plants. Trends Plant Sci 1:149–156 Brown RM Jr, Saxena IM, Kudlicka K (1996) Cellulose biosynthesis in higher plants. Trends Plant Sci 1:149–156
go back to reference Buckeridge MS (2010) Seed cell wall storage polysaccharides: models to understand cell wall biosynthesis and degradation. Plant Physiol 154:1017–1023 Buckeridge MS (2010) Seed cell wall storage polysaccharides: models to understand cell wall biosynthesis and degradation. Plant Physiol 154:1017–1023
go back to reference Burton RA, Fincher GB (2009) (1,3;1,4)-beta-D-glucans in cell walls of the poaceae, lower plants, and fungi: a tale of two linkages. Mol Plant 2:873–882 Burton RA, Fincher GB (2009) (1,3;1,4)-beta-D-glucans in cell walls of the poaceae, lower plants, and fungi: a tale of two linkages. Mol Plant 2:873–882
go back to reference Burton RA, Wilson SM, Hrmova M, Harvey AJ, Shirley NJ, Medhurst A, Stone BA, Newbigin EJ, Bacic A, Fincher GB (2006) Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-β-D-glucans. Science 311:1940–1942 Burton RA, Wilson SM, Hrmova M, Harvey AJ, Shirley NJ, Medhurst A, Stone BA, Newbigin EJ, Bacic A, Fincher GB (2006) Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-β-D-glucans. Science 311:1940–1942
go back to reference Campbell CJ (2006) The Rimini protocol an oil depletion protocol: heading off economic chaos and political conflict during the second half of the age of oil. Energy Policy 34:1319–1325 Campbell CJ (2006) The Rimini protocol an oil depletion protocol: heading off economic chaos and political conflict during the second half of the age of oil. Energy Policy 34:1319–1325
go back to reference Carpita NC, Gibeaut DM (1993) Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth. Plant J 3:1–30 Carpita NC, Gibeaut DM (1993) Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth. Plant J 3:1–30
go back to reference Carvalheiro F, Silva-Fernandes T, Duarte LC, Gírio FM (2009) Wheat straw autohydrolysis: process optimization and products characterization. Appl Biochem Biotechnol 153:84–93 Carvalheiro F, Silva-Fernandes T, Duarte LC, Gírio FM (2009) Wheat straw autohydrolysis: process optimization and products characterization. Appl Biochem Biotechnol 153:84–93
go back to reference Chaliaud E, Burrows KM, Jeronimidis G, Gidley MJ (2002) Mechanical properties of primary plant cell wall analogues. Planta 215:989–996 Chaliaud E, Burrows KM, Jeronimidis G, Gidley MJ (2002) Mechanical properties of primary plant cell wall analogues. Planta 215:989–996
go back to reference Chen F, Dixon RA (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat Biotechnol 25:759–761 Chen F, Dixon RA (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat Biotechnol 25:759–761
go back to reference Chundawat SPS, Venkatesh B, Dale BE (2007) Effect of particle size based separation of milled corn stover on AFEX pretreatment and enzymatic digestibility. Biotechnol Bioeng 96:219–231 Chundawat SPS, Venkatesh B, Dale BE (2007) Effect of particle size based separation of milled corn stover on AFEX pretreatment and enzymatic digestibility. Biotechnol Bioeng 96:219–231
go back to reference Cocuron J-C, Lerouxel O, Drakakaki G, Alonso AP, Liepman AH, Keegstra K, Raikhel NV, Wilkerson CG (2007) A gene from the cellulose synthase-like C family encodes a β-1,4 glucan synthase. Proc Natl Acad Sci U S A 140:8550–8555 Cocuron J-C, Lerouxel O, Drakakaki G, Alonso AP, Liepman AH, Keegstra K, Raikhel NV, Wilkerson CG (2007) A gene from the cellulose synthase-like C family encodes a β-1,4 glucan synthase. Proc Natl Acad Sci U S A 140:8550–8555
go back to reference Davin LB, Lewis NG (2000) Dirigent proteins and dirigent sites explain the mystery of specificity of radical precursor coupling in lignan and lignin biosynthesis. Plant Physiol 123:453–462 Davin LB, Lewis NG (2000) Dirigent proteins and dirigent sites explain the mystery of specificity of radical precursor coupling in lignan and lignin biosynthesis. Plant Physiol 123:453–462
go back to reference De Bari I, Nanna F, Braccio G (2007) SO2-catalyzed steam fractionation of aspen chips for bioethanol production: optimization of the catalyst impregnation. Ind Eng Chem Res 46:7711–7720 De Bari I, Nanna F, Braccio G (2007) SO2-catalyzed steam fractionation of aspen chips for bioethanol production: optimization of the catalyst impregnation. Ind Eng Chem Res 46:7711–7720
go back to reference Deguchi S, Tsujii K, Horikoshi K (2006) Cooking cellulose in hot and compressed water. Chem Commun 31:3293–3295 Deguchi S, Tsujii K, Horikoshi K (2006) Cooking cellulose in hot and compressed water. Chem Commun 31:3293–3295
go back to reference Dhugga KS, Barreiro R, Whitten B, Stecca K, Hazebroek J, Randhawa GS, Dolan M, Kinney A, Tomes D, Nichols S, Anderson P (2004) Guar seed β-mannan synthase is a member of the cellulose synthase super gene family. Science 303:363–366 Dhugga KS, Barreiro R, Whitten B, Stecca K, Hazebroek J, Randhawa GS, Dolan M, Kinney A, Tomes D, Nichols S, Anderson P (2004) Guar seed β-mannan synthase is a member of the cellulose synthase super gene family. Science 303:363–366
go back to reference Dien BS, Jung HG, Vogel KP, Casler MD, Lamb JFS, Iten L, Mitchell RB, Sarath G (2006) Chemical composition and response to dilute-acid pretreatment and enzymatic saccharification of alfalfa, reed canarygrass, and a switchgrass. Biomass Bioenergy 30:880–891 Dien BS, Jung HG, Vogel KP, Casler MD, Lamb JFS, Iten L, Mitchell RB, Sarath G (2006) Chemical composition and response to dilute-acid pretreatment and enzymatic saccharification of alfalfa, reed canarygrass, and a switchgrass. Biomass Bioenergy 30:880–891
go back to reference Ding SY, Himmel ME (2006) The maize primary cell wall microfibril: a new model derived from direct visualization. J Agric Food Chem 54:597–606 Ding SY, Himmel ME (2006) The maize primary cell wall microfibril: a new model derived from direct visualization. J Agric Food Chem 54:597–606
go back to reference Doblin MS, Pettolino FA, Wilson SM, Campbell R, Burton RA, Fincher GB, Newbigin E, Bacic A (2009) A barley cellulose synthase-like CSLH gene mediates (1,3;1,4)-beta-D-glucan synthesis in transgenic Arabidopsis. Proc Natl Acad Sci U S A 106:5996–6001 Doblin MS, Pettolino FA, Wilson SM, Campbell R, Burton RA, Fincher GB, Newbigin E, Bacic A (2009) A barley cellulose synthase-like CSLH gene mediates (1,3;1,4)-beta-D-glucan synthesis in transgenic Arabidopsis. Proc Natl Acad Sci U S A 106:5996–6001
go back to reference Duree P (2007) Biobutanol: an attractive biofuel. Biotechnol J 2:1525–1534 Duree P (2007) Biobutanol: an attractive biofuel. Biotechnol J 2:1525–1534
go back to reference Ebringerova A, Heinze T (2000) Xylan and xylan derivatives—biopolymers with valuable properties, 1—naturally occurring xylans structures, procedures and properties. Macromol Rapid Commun 21:542–556 Ebringerova A, Heinze T (2000) Xylan and xylan derivativesbiopolymers with valuable properties, 1—naturally occurring xylans structures, procedures and properties. Macromol Rapid Commun 21:542–556
go back to reference Edwards ME, Dickson CA, Chengappa S, Sidebottom C, Gidley MJ, Reid JSG (1999) Molecular characterization of a membrane-bound galactosyltransferase of plant cell wall matrix polysaccharide biosynthesis. Plant J 19:691–697 Edwards ME, Dickson CA, Chengappa S, Sidebottom C, Gidley MJ, Reid JSG (1999) Molecular characterization of a membrane-bound galactosyltransferase of plant cell wall matrix polysaccharide biosynthesis. Plant J 19:691–697
go back to reference Eglund J, Peterson BL, Motawia MS, Damager I, Faik A, Olsen CE, Ishii T, Clausen H, Ulvskov P, Geshi N (2006) Biosynthesis of pectic rhamnogalacturonan II: molecular cloning and characterization of golgi-localized alpha(1, 3) xylosyltransferases encoded by RGXT1 and RGXT2 genes of Arabidopsis thaliana. Plant Cell 18:2593–2607 Eglund J, Peterson BL, Motawia MS, Damager I, Faik A, Olsen CE, Ishii T, Clausen H, Ulvskov P, Geshi N (2006) Biosynthesis of pectic rhamnogalacturonan II: molecular cloning and characterization of golgi-localized alpha(1, 3) xylosyltransferases encoded by RGXT1 and RGXT2 genes of Arabidopsis thaliana. Plant Cell 18:2593–2607
go back to reference Eliasson A, Christensson C, Wahlbom CF, Hahn-Hägerdal B (2000) Anaerobic xylose fermentation by recombinant Saccharomyces cerevisiae carrying XYL1, XYL2, and XKS1 in mineral medium chemostat cultures. Appl Environ Microbiol 66:3381–3386 Eliasson A, Christensson C, Wahlbom CF, Hahn-Hägerdal B (2000) Anaerobic xylose fermentation by recombinant Saccharomyces cerevisiae carrying XYL1, XYL2, and XKS1 in mineral medium chemostat cultures. Appl Environ Microbiol 66:3381–3386
go back to reference Erickson M, Miksche GE, Somfai I (1973) Holz- and forschung 271:13–119 Erickson M, Miksche GE, Somfai I (1973) Holz- and forschung 271:13–119
go back to reference Erilkssen O, Goring DAI, Lindgren BO (1980) Structural studies on chemical bonds between lignins and carbohydrates in spruce wood. Wood Sci Technol 14:267–279 Erilkssen O, Goring DAI, Lindgren BO (1980) Structural studies on chemical bonds between lignins and carbohydrates in spruce wood. Wood Sci Technol 14:267–279
go back to reference Faik A (2010) Xylan biosynthesis: news from the grass. Plant Physiol 153:396–402 Faik A (2010) Xylan biosynthesis: news from the grass. Plant Physiol 153:396–402
go back to reference Faik A, Bar-Peled M, Derocher E, Zeng W, Perrin RM, Wilkerson C, Raikhel NV, Keegstra K (2000) Biochemical characterization and molecular cloning of an α(1,2)Fucosyltransferase that catalyzes the last step of cell wall xyloglucan biosynthesis in pea. J Biol Chem 275:15082–15089 Faik A, Bar-Peled M, Derocher E, Zeng W, Perrin RM, Wilkerson C, Raikhel NV, Keegstra K (2000) Biochemical characterization and molecular cloning of an α(1,2)Fucosyltransferase that catalyzes the last step of cell wall xyloglucan biosynthesis in pea. J Biol Chem 275:15082–15089
go back to reference Faik A, Price NJ, Raikhel NV, Keegstra K (2002) An Arabidopsis gene encoding an α-xylosyltransferase involved in xyloglucan biosynthesis. Proc Natl Acad Sci U S A 99:7797–7802 Faik A, Price NJ, Raikhel NV, Keegstra K (2002) An Arabidopsis gene encoding an α-xylosyltransferase involved in xyloglucan biosynthesis. Proc Natl Acad Sci U S A 99:7797–7802
go back to reference Fales S, Fritz JO (2007) Factors affecting forage quality. In: Barnes RF, Nelson CJ, Moore KJ, Collins M, (eds) Forages, the science of grassland agriculture, vol 2. Blackwell Publishing, Ames, pp 569–580 Fales S, Fritz JO (2007) Factors affecting forage quality. In: Barnes RF, Nelson CJ, Moore KJ, Collins M, (eds) Forages, the science of grassland agriculture, vol 2. Blackwell Publishing, Ames, pp 569–580
go back to reference Fry SC (1986) Cross-linking of matrix polymers in the growing cell-walls of angiosperms. Annu Rev Plant Physiol Plant Mol Biol 37:165–186 Fry SC (1986) Cross-linking of matrix polymers in the growing cell-walls of angiosperms. Annu Rev Plant Physiol Plant Mol Biol 37:165–186
go back to reference Hall DO (1979) Solar energy use through biology—past, present and future. Sol Energy 22:307–328 Hall DO (1979) Solar energy use through biology—past, present and future. Sol Energy 22:307–328
go back to reference Hayashi T, Maclachlan G (1984) Pea xyloglucan and cellulose. I. Macromolecular organization. Plant Physiol 75:596–604 Hayashi T, Maclachlan G (1984) Pea xyloglucan and cellulose. I. Macromolecular organization. Plant Physiol 75:596–604
go back to reference He L, Terashima N (1989) Formation and structure of lignin in monocotyledons. I. Selective labeling of the structural units of lignin in rice plant ( Oryza sativa ) with 3H and visualization of their distribution in the tissue by microautoradiography. Mokuzai Gakkaishi 35:116–122 He L, Terashima N (1989) Formation and structure of lignin in monocotyledons. I. Selective labeling of the structural units of lignin in rice plant ( Oryza sativa ) with 3H and visualization of their distribution in the tissue by microautoradiography. Mokuzai Gakkaishi 35:116–122
go back to reference Hector RE, Qureshi N, Hughes SR, Cotta MA (2008) Expression of a heterologous xylose transporter in a Saccharomyces cerevisiae strain engineered to utilize xylose improves aerobic xylose consumption. Appl Microbiol Biotechnol 80:675–684 Hector RE, Qureshi N, Hughes SR, Cotta MA (2008) Expression of a heterologous xylose transporter in a Saccharomyces cerevisiae strain engineered to utilize xylose improves aerobic xylose consumption. Appl Microbiol Biotechnol 80:675–684
go back to reference Hemschemeier A, Melis A, Happe T (2009) Analytical approaches to photobiological hydrogen production in unicellular green algae. Photosynth Res 102:523–540 Hemschemeier A, Melis A, Happe T (2009) Analytical approaches to photobiological hydrogen production in unicellular green algae. Photosynth Res 102:523–540
go back to reference Higuchi T (1985) Biosynthesis of lignin. In: Higuchi T (ed) Biosynthesis and biodegradation of wood components. Orlando Academic Press, Orlando, pp 141–160 Higuchi T (1985) Biosynthesis of lignin. In: Higuchi T (ed) Biosynthesis and biodegradation of wood components. Orlando Academic Press, Orlando, pp 141–160
go back to reference Hill J, Nelson E, Tilman D, Polasky S, Tiffany D (2006) Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels. Proc Natl Acad Sci U S A 103:11206–11210 Hill J, Nelson E, Tilman D, Polasky S, Tiffany D (2006) Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels. Proc Natl Acad Sci U S A 103:11206–11210
go back to reference Ho NWY (1998) Genetically engineered Saccharomyces yeast capable of effective co-fermentation of glucose and xylose. Appl Environ Microbiol 64:1852–1859 Ho NWY (1998) Genetically engineered Saccharomyces yeast capable of effective co-fermentation of glucose and xylose. Appl Environ Microbiol 64:1852–1859
go back to reference Howard R (2003) Lignocellulose biotechnology: issues of bioconversion and enzyme production. Afr J Biotechnol 2:602–619 Howard R (2003) Lignocellulose biotechnology: issues of bioconversion and enzyme production. Afr J Biotechnol 2:602–619
go back to reference Hsieh Y (2009) Alkaline pre-treatment of rice hulls for hydrothermal production of acetic acid. Chem Eng Res Des 87:13–18 Hsieh Y (2009) Alkaline pre-treatment of rice hulls for hydrothermal production of acetic acid. Chem Eng Res Des 87:13–18
go back to reference Hsu TA (1996) Pretreatment of biomass. In: Wyman CE (ed) Handbook on bioethanol, production and utilization. Taylor & Francis, Washington, pp 179–212 Hsu TA (1996) Pretreatment of biomass. In: Wyman CE (ed) Handbook on bioethanol, production and utilization. Taylor & Francis, Washington, pp 179–212
go back to reference Hu Q, Sommerfeld M, Jarvis E, Ghirardi M, Posewitz M, Seibert M, Darzins A (2008) Microalgal triacylglycerols as feedstocks fir biofuel production: perspectives and advances. Plant J 54:621–639 Hu Q, Sommerfeld M, Jarvis E, Ghirardi M, Posewitz M, Seibert M, Darzins A (2008) Microalgal triacylglycerols as feedstocks fir biofuel production: perspectives and advances. Plant J 54:621–639
go back to reference Hwang SS, Lee SJ, Kim HK, Ka JO, Kim KJ, Song HG (2008) Biodegradation and saccharification of wood chips of Pinus strobus and Liriodendron tulipifera by white rot fungi. J Microbiol Biotechnol 18:1819–1825 Hwang SS, Lee SJ, Kim HK, Ka JO, Kim KJ, Song HG (2008) Biodegradation and saccharification of wood chips of Pinus strobus and Liriodendron tulipifera by white rot fungi. J Microbiol Biotechnol 18:1819–1825
go back to reference Jarvis M (2003) Cellulose stacks up. Nature 426:611–612 Jarvis M (2003) Cellulose stacks up. Nature 426:611–612
go back to reference Jensen JK, Kim H, Cocuron J-C, Orler R, Ralph J, Wilkerson CG (2011) The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Plant J 66:387–400 Jensen JK, Kim H, Cocuron J-C, Orler R, Ralph J, Wilkerson CG (2011) The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Plant J 66:387–400
go back to reference Jin SY, Chen HZ (2007) Near-infrared analysis of the chemical composition of rice straw. Ind Crops Prod 26:207–211 Jin SY, Chen HZ (2007) Near-infrared analysis of the chemical composition of rice straw. Ind Crops Prod 26:207–211
go back to reference Kaar WE, Holtzapple MT (2000) Using lime pretreatment to facilitate the enzymatic hydrolysis of corn stover. Biomass Bioenerg 18:189–199 Kaar WE, Holtzapple MT (2000) Using lime pretreatment to facilitate the enzymatic hydrolysis of corn stover. Biomass Bioenerg 18:189–199
go back to reference Kabel MA (2007) Effect of pretreatment severity on xylan solubility and enzymatic breakdown of the remaining cellulose from wheat straw. Bioresour Technol 98:2034–2042 Kabel MA (2007) Effect of pretreatment severity on xylan solubility and enzymatic breakdown of the remaining cellulose from wheat straw. Bioresour Technol 98:2034–2042
go back to reference Karhumaa K, Hahn-Hägerdal B, Gorwa-Grauslund MF (2005) Investigation of limiting metabolic steps in the utilization of xylose by recombinant Saccharomyces cerevisiae using metabolic engineering. Yeast 22:359–368 Karhumaa K, Hahn-Hägerdal B, Gorwa-Grauslund MF (2005) Investigation of limiting metabolic steps in the utilization of xylose by recombinant Saccharomyces cerevisiae using metabolic engineering. Yeast 22:359–368
go back to reference Kataeva IA, Yang S-J, Dam P, Poole II PF, Yin Y, Zhou F, Chou W-C, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams MWW (2009) Genome sequence of the anaerobic, thermophilic and cellulolytic bacterium “Anaerocellum thermophilum” DSM 6725. J Bacteriol 191:3760–3761 Kataeva IA, Yang S-J, Dam P, Poole II PF, Yin Y, Zhou F, Chou W-C, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams MWW (2009) Genome sequence of the anaerobic, thermophilic and cellulolytic bacterium “Anaerocellum thermophilum” DSM 6725. J Bacteriol 191:3760–3761
go back to reference Keegstra K, Talmadge KW, Bauer WD, Albersheim P (1973) The structure of plant cell walls III. A model of the wall of suspension-cultured sycamore cells based on interconnections of the macromolecular components. Plant Physiol 51:188–197 Keegstra K, Talmadge KW, Bauer WD, Albersheim P (1973) The structure of plant cell walls III. A model of the wall of suspension-cultured sycamore cells based on interconnections of the macromolecular components. Plant Physiol 51:188–197
go back to reference Kennedy CJ, Cameron GJ, Sturcova A, Apperley DC, Altaner C, Wess TJ, Jarvis MC (2007) Microfibril diameter in celery collenchyma cellulose: X-ray scattering and NMR evidence. Cellulose 14:235–246 Kennedy CJ, Cameron GJ, Sturcova A, Apperley DC, Altaner C, Wess TJ, Jarvis MC (2007) Microfibril diameter in celery collenchyma cellulose: X-ray scattering and NMR evidence. Cellulose 14:235–246
go back to reference Kim SB, Yum DM, Park SC (2000) Step-change variation of acid concentration in a percolation reactor for hydrolysis of hardwood hemicellulose. Bioresour Technol 72:289–294 Kim SB, Yum DM, Park SC (2000) Step-change variation of acid concentration in a percolation reactor for hydrolysis of hardwood hemicellulose. Bioresour Technol 72:289–294
go back to reference Kim TH, Kim JS, Sunwoo C, Lee YY (2003) Pretreatment of corn stover by aqueous ammonia. Bioresour Technol 90:39–47 Kim TH, Kim JS, Sunwoo C, Lee YY (2003) Pretreatment of corn stover by aqueous ammonia. Bioresour Technol 90:39–47
go back to reference Kishimoto T, Chiba W, Saito K, Fukushima K, Uraki Y, Ubukata M (2010) Influence of syringyl to guaiacyl ratio on the structure of natural and synthetic lignins. J Agric Food Chem 58:895–901 Kishimoto T, Chiba W, Saito K, Fukushima K, Uraki Y, Ubukata M (2010) Influence of syringyl to guaiacyl ratio on the structure of natural and synthetic lignins. J Agric Food Chem 58:895–901
go back to reference Kraakman L, Lemaire K, Ma P, Teunissen AW, Donaton MC, Van Dijck P, Winderickx J, de Winde JH, Thevelein JM (1999) A Saccharomyces cerevisiae G-protein coupled receptor, Gpr1, is specifically required for glucose activation of the cAMP pathway during the transition to growth on glucose. Mol Microbiol 32:1002–1012 Kraakman L, Lemaire K, Ma P, Teunissen AW, Donaton MC, Van Dijck P, Winderickx J, de Winde JH, Thevelein JM (1999) A Saccharomyces cerevisiae G-protein coupled receptor, Gpr1, is specifically required for glucose activation of the cAMP pathway during the transition to growth on glucose. Mol Microbiol 32:1002–1012
go back to reference Kuhar S, Nair LM, Kuhad RC (2008) Pretreatment of lignocellulosic material with fungi capable of higher lignin degradation and lower carbohydrate degradation improves substrate acid hydrolysis and the eventual conversion to ethanol. Can J Microbiol 54:305–313 Kuhar S, Nair LM, Kuhad RC (2008) Pretreatment of lignocellulosic material with fungi capable of higher lignin degradation and lower carbohydrate degradation improves substrate acid hydrolysis and the eventual conversion to ethanol. Can J Microbiol 54:305–313
go back to reference Kurakake M, Ide N, Komaki T (2007) Biological pretreatment with two bacterial strains for enzymatic hydrolysis of office paper. Curr Microbiol 54:424–428 Kurakake M, Ide N, Komaki T (2007) Biological pretreatment with two bacterial strains for enzymatic hydrolysis of office paper. Curr Microbiol 54:424–428
go back to reference Larkum AW, Ross IL, Kruse O, Hankamer B (2011) Selection, breeding and engineering of microalgae for bioenergy and biofuel production. Trends Biotechnol 30:198–205 Larkum AW, Ross IL, Kruse O, Hankamer B (2011) Selection, breeding and engineering of microalgae for bioenergy and biofuel production. Trends Biotechnol 30:198–205
go back to reference Lee JW, Gwak KS, Park JY, Park MJ, Choi DH, Kwon M, Choi IG (2007) Biological pretreatment of softwood Pinus densiflora by three white rot fungi. J Microbiol 45:485–491 Lee JW, Gwak KS, Park JY, Park MJ, Choi DH, Kwon M, Choi IG (2007) Biological pretreatment of softwood Pinus densiflora by three white rot fungi. J Microbiol 45:485–491
go back to reference Li L, Cheng XF, Leshkevich J, Umezawa T, Harding SA, Chiang VL (2001) The last step of syringyl monolignol biosynthesis in angiosperms is regulated by a novel gene encoding sinapyl alcohol dehydrogenase. Plant Cell 13:1567–1585 Li L, Cheng XF, Leshkevich J, Umezawa T, Harding SA, Chiang VL (2001) The last step of syringyl monolignol biosynthesis in angiosperms is regulated by a novel gene encoding sinapyl alcohol dehydrogenase. Plant Cell 13:1567–1585
go back to reference Liu E, Hu Y (2011) Construction of a xylose-fermenting Saccharomyces cerevisiae strain by combined approaches of genetic engineering, chemical mutagenesis and evolutionary adaptation. Biochem Eng J 48:204–210 Liu E, Hu Y (2011) Construction of a xylose-fermenting Saccharomyces cerevisiae strain by combined approaches of genetic engineering, chemical mutagenesis and evolutionary adaptation. Biochem Eng J 48:204–210
go back to reference Lynd L, Cushman J, Nichols R, Wyman C (1991) Fuel ethanol from cellulosic biomass. Science 251:1318–1323 Lynd L, Cushman J, Nichols R, Wyman C (1991) Fuel ethanol from cellulosic biomass. Science 251:1318–1323
go back to reference Lynd LR, Wyman CE, Gerngross TU (1999) Biocommodity engineering. Biotechnol Prog 15:777–793 Lynd LR, Wyman CE, Gerngross TU (1999) Biocommodity engineering. Biotechnol Prog 15:777–793
go back to reference Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66:506–577 Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66:506–577
go back to reference Mabee WE, Gregg DJ, Arato C, Berlin A, Bura R, Gilkes N, Mirochnik O, Pan X, Pye EK, Saddler JN (2006) Updates on softwood-to-ethanol process development. Appl Biochem Biotechnol 129–132:55–70 Mabee WE, Gregg DJ, Arato C, Berlin A, Bura R, Gilkes N, Mirochnik O, Pan X, Pye EK, Saddler JN (2006) Updates on softwood-to-ethanol process development. Appl Biochem Biotechnol 129–132:55–70
go back to reference Mackie KL, Brownell HH, West KL (1985) Effect of sulfur dioxide and sulfuric acid on steam explosion of aspen wood. J Wood Chem Technol 5:405–425 Mackie KL, Brownell HH, West KL (1985) Effect of sulfur dioxide and sulfuric acid on steam explosion of aspen wood. J Wood Chem Technol 5:405–425
go back to reference Majid J, Luxhoi J, Lyshede OB (2004) Decomposition of plant residues at low temperatures separates turnover of nitrogen and energy rich tissue components in time. Plant Soil 258:351–365 Majid J, Luxhoi J, Lyshede OB (2004) Decomposition of plant residues at low temperatures separates turnover of nitrogen and energy rich tissue components in time. Plant Soil 258:351–365
go back to reference Manthey FA, Hareland GA, Huseby DJ (1999) Soluble and insoluble dietary fiber content and composition in oat. Cereal Chem 76:417–420 Manthey FA, Hareland GA, Huseby DJ (1999) Soluble and insoluble dietary fiber content and composition in oat. Cereal Chem 76:417–420
go back to reference McCann MC, Roberts K (1991) Architecture of the primary cell wall. In: Lloyd CW (ed) The cytoskeletal basis of plant growth and form. Academic Press, Toronto, pp 109–129 McCann MC, Roberts K (1991) Architecture of the primary cell wall. In: Lloyd CW (ed) The cytoskeletal basis of plant growth and form. Academic Press, Toronto, pp 109–129
go back to reference McCann MC, Wells B, Roberts K (1990) Direct visualization of cross-links in the primary plant cell wall. J Cell Sci 96:323–334 McCann MC, Wells B, Roberts K (1990) Direct visualization of cross-links in the primary plant cell wall. J Cell Sci 96:323–334
go back to reference McCann MC, Wells B, Roberts K (1992) Complexity in the spatial localization and length distribution of plant cell-wall matrix polysaccharides. J Microsc 166:123–136 McCann MC, Wells B, Roberts K (1992) Complexity in the spatial localization and length distribution of plant cell-wall matrix polysaccharides. J Microsc 166:123–136
go back to reference McMillan JD (1994) Pretreatment of lignocellulosic biomass. In: Himmel ME, Baker JO, Overend RP (eds) Enzymatic conversion of biomass for fuels production. American Chemical Society, Washington, pp 292–324 McMillan JD (1994) Pretreatment of lignocellulosic biomass. In: Himmel ME, Baker JO, Overend RP (eds) Enzymatic conversion of biomass for fuels production. American Chemical Society, Washington, pp 292–324
go back to reference Melis A, Zhang L, Forestier M, Ghirardi ML, Seibert M (2000) Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. Plant Physiol 122:127–135 Melis A, Zhang L, Forestier M, Ghirardi ML, Seibert M (2000) Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. Plant Physiol 122:127–135
go back to reference Mellerowicz EJ, Baucher M, Sundberg B, Boerjan W (2001) Unraveling cell wall formation in the woody dicot stem. Plant Mol Biol 47:239–274 Mellerowicz EJ, Baucher M, Sundberg B, Boerjan W (2001) Unraveling cell wall formation in the woody dicot stem. Plant Mol Biol 47:239–274
go back to reference Michalowicz G, Toussaint B, Vignon MR (1991) Ultrastructural-changing in poplar cell wall during steam explosion treatment. Holzforschung 45:175–179 Michalowicz G, Toussaint B, Vignon MR (1991) Ultrastructural-changing in poplar cell wall during steam explosion treatment. Holzforschung 45:175–179
go back to reference Miller SS, Fulcher RG (1995) Oat endosperm cell walls: II. hot-water solubilization and enzymatic digestion of the wall. Cereal Chem 72:428–432 Miller SS, Fulcher RG (1995) Oat endosperm cell walls: II. hot-water solubilization and enzymatic digestion of the wall. Cereal Chem 72:428–432
go back to reference Miller S, Hester R (2007) Concentrated acid conversion of pine softwood to sugars. Part 1: use of a twin-screw reactor for hydrolysis pretreatment. Chem Eng Commun 194:85–102 Miller S, Hester R (2007) Concentrated acid conversion of pine softwood to sugars. Part 1: use of a twin-screw reactor for hydrolysis pretreatment. Chem Eng Commun 194:85–102
go back to reference Mohnen D (2008) Pectin structure and biosynthesis. Curr Opin Plant Biol 11:266–277 Mohnen D (2008) Pectin structure and biosynthesis. Curr Opin Plant Biol 11:266–277
go back to reference Mosier N, Wyman C, Dale B, Elander R, Lee YY, Holtzapple M, Ladisch M (2005) Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol 96:673–686 Mosier N, Wyman C, Dale B, Elander R, Lee YY, Holtzapple M, Ladisch M (2005) Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol 96:673–686
go back to reference Mueller SC, Brown RM Jr (1980) Evidence for an intramembranous component associated with a cellulose microfibril synthesizing complex in higher plants. J Cell Biol 84:315–326 Mueller SC, Brown RM Jr (1980) Evidence for an intramembranous component associated with a cellulose microfibril synthesizing complex in higher plants. J Cell Biol 84:315–326
go back to reference Muller PR (1974) Look back without anger: a reappraisal of William A. Dunning. J Am Hist 61:325–338 Muller PR (1974) Look back without anger: a reappraisal of William A. Dunning. J Am Hist 61:325–338
go back to reference Nakamura N, Yamada R, Katahira S, Tanaka T, Fukuda H, Kondo A (2008) Effective xylose/cellobiose co-fermentation and ethanol production of xylose-assimilating S. cerevisiae via expression of β-glucosidase on its cell surface. Enzym Microb Technol 43:233–236 Nakamura N, Yamada R, Katahira S, Tanaka T, Fukuda H, Kondo A (2008) Effective xylose/cellobiose co-fermentation and ethanol production of xylose-assimilating S. cerevisiae via expression of β-glucosidase on its cell surface. Enzym Microb Technol 43:233–236
go back to reference Narayanaswamy N, Faik A, Goetz DJ, Gu T (2011) Supercritical carbon dioxide pretreatment of corn stover and switchgrass for lignocellulosic ethanol production. Bioresour Technol 102:6995–7000 Narayanaswamy N, Faik A, Goetz DJ, Gu T (2011) Supercritical carbon dioxide pretreatment of corn stover and switchgrass for lignocellulosic ethanol production. Bioresour Technol 102:6995–7000
go back to reference Ni H, Laplaza JM, Jeffries TW (2007) Transposon mutagenesis to improve the growth of recombinant Saccharomyces cerevisiae on xylose. Appl Environ Microbiol 73:2061–2066 Ni H, Laplaza JM, Jeffries TW (2007) Transposon mutagenesis to improve the growth of recombinant Saccharomyces cerevisiae on xylose. Appl Environ Microbiol 73:2061–2066
go back to reference Ohta K, Beall DS, Mejia JP, Shanmugam KT, Ingram LO (1991) Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II. Appl Environ Microbiol 57:893–900 Ohta K, Beall DS, Mejia JP, Shanmugam KT, Ingram LO (1991) Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II. Appl Environ Microbiol 57:893–900
go back to reference Pan X, Xie D, Kang KY, Yoon SL, Saddler JN (2007) Effect of organosolv ethanol pretreatment variables on physical characteristics of hybrid poplar substrates. Appl Biochem Biotechnol 136–140:367–377 Pan X, Xie D, Kang KY, Yoon SL, Saddler JN (2007) Effect of organosolv ethanol pretreatment variables on physical characteristics of hybrid poplar substrates. Appl Biochem Biotechnol 136–140:367–377
go back to reference Peng B, Shen Y, Li X, Chen X, Hou J, Bao X (2012) Improvement of xylose fermentation in respiratory-deficient xylose-fermenting Saccharomyces cerevisiae. Metab Eng 14:9–18 Peng B, Shen Y, Li X, Chen X, Hou J, Bao X (2012) Improvement of xylose fermentation in respiratory-deficient xylose-fermenting Saccharomyces cerevisiae. Metab Eng 14:9–18
go back to reference Perrin RM, Derocher AE, Bar-Peled M, Zeng W, Norambuena L, Orellana A, Raikhel NV, Keegstra K (1999) Xyloglucan fucosyltransferase, an enzyme involved in plant cell wall biosynthesis. Science 284:1976–1979 Perrin RM, Derocher AE, Bar-Peled M, Zeng W, Norambuena L, Orellana A, Raikhel NV, Keegstra K (1999) Xyloglucan fucosyltransferase, an enzyme involved in plant cell wall biosynthesis. Science 284:1976–1979
go back to reference Persson S, Caffall KH, Freshour G, Hilley MT, Bauer S, Poindexter P, Hahn MG, Mohnen D, Somerville C (2007) The Arabidopsis irregular xylem8 Mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell 19:237–255 Persson S, Caffall KH, Freshour G, Hilley MT, Bauer S, Poindexter P, Hahn MG, Mohnen D, Somerville C (2007) The Arabidopsis irregular xylem8 Mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell 19:237–255
go back to reference Persson T, Ren JL, Joelsson E, Jönsson AS (2009) Fractionation of wheat and barley straw to access high molecular-mass hemicelluloses prior to ethanol production. Bioresour Technol 100:3906–3913 Persson T, Ren JL, Joelsson E, Jönsson AS (2009) Fractionation of wheat and barley straw to access high molecular-mass hemicelluloses prior to ethanol production. Bioresour Technol 100:3906–3913
go back to reference Posten C (2009) Design principles of photo-bioreactors for cultivation of microalgae. Eng Life Sci 9:165–177 Posten C (2009) Design principles of photo-bioreactors for cultivation of microalgae. Eng Life Sci 9:165–177
go back to reference Ralph J, Lundquist K, Brunow G, Lu F, Kim H, Schatz PF, Marita JM, Hatfield RD, Ralph SA, Christensen JH, Boerjan W (2004) Lignins: natural polymers from oxidative coupling of 4-hydroxyphenylpropanoids. Phytochemistry 3:29–60 Ralph J, Lundquist K, Brunow G, Lu F, Kim H, Schatz PF, Marita JM, Hatfield RD, Ralph SA, Christensen JH, Boerjan W (2004) Lignins: natural polymers from oxidative coupling of 4-hydroxyphenylpropanoids. Phytochemistry 3:29–60
go back to reference Ralph J, Brunow G, Harris PJ, Dixon RA, Schatz PF, Boerjan W (2008) Lignification: are lignins biosynthesized via simple combinatorial chemistry or via proteinaceous control and template replication? In: Daayf F, Hadrami A El, Adam L, Ballance GM (eds), Recent advances in polyphenol research, Vol 1. Wiley-Blackwell Publishing, Oxford, pp 36–66 Ralph J, Brunow G, Harris PJ, Dixon RA, Schatz PF, Boerjan W (2008) Lignification: are lignins biosynthesized via simple combinatorial chemistry or via proteinaceous control and template replication? In: Daayf F, Hadrami A El, Adam L, Ballance GM (eds), Recent advances in polyphenol research, Vol 1. Wiley-Blackwell Publishing, Oxford, pp 36–66
go back to reference Ranocha P, Chabannes M, Chamayou S, Danoun S, Jauneau A, Boudet A-M, Deborah G (2002) Laccase down-regulation causes alterations in phenolic metabolism and cell wall structure in poplar. Plant Physiol 129:145–155 Ranocha P, Chabannes M, Chamayou S, Danoun S, Jauneau A, Boudet A-M, Deborah G (2002) Laccase down-regulation causes alterations in phenolic metabolism and cell wall structure in poplar. Plant Physiol 129:145–155
go back to reference Regalbuto JR (2009) Cellulosic biofuels—got gasoline? Science 325:822–824 Regalbuto JR (2009) Cellulosic biofuels—got gasoline? Science 325:822–824
go back to reference Reiter W-D, Chapple CCS, Somerville CR (1993) Altered growth and cell walls in a fucose-deficient mutant of Arabidopsis. Science 261:1032–1035 Reiter W-D, Chapple CCS, Somerville CR (1993) Altered growth and cell walls in a fucose-deficient mutant of Arabidopsis. Science 261:1032–1035
go back to reference Rogalinski T, Ingram T, Brunner GJ (2008) Hydrolysis of lignocellulosic biomass in water under elevated temperatures and pressures. J Supercrit Fluids 47:54–63 Rogalinski T, Ingram T, Brunner GJ (2008) Hydrolysis of lignocellulosic biomass in water under elevated temperatures and pressures. J Supercrit Fluids 47:54–63
go back to reference Rosgaard L, Pedersen S, Meyer AS (2007) Comparison of different pretreatment strategies for enzymatic hydrolysis of wheat and barley straw. Appl Biochem Biotechnol 143:284–296 Rosgaard L, Pedersen S, Meyer AS (2007) Comparison of different pretreatment strategies for enzymatic hydrolysis of wheat and barley straw. Appl Biochem Biotechnol 143:284–296
go back to reference Rubin EM (2008) Genomics of cellulosic biofuels. Nature 454:841–845 Rubin EM (2008) Genomics of cellulosic biofuels. Nature 454:841–845
go back to reference Saha BC, Cotta MA (2010) Comparison of pretreatment strategies for enzymatic saccharification of barley straw to ethanol. New Biotechnol 27:10–16 Saha BC, Cotta MA (2010) Comparison of pretreatment strategies for enzymatic saccharification of barley straw to ethanol. New Biotechnol 27:10–16
go back to reference Saulnier L, Marot C, Chanliaud E, Thibault JF (1995) Cell wall polysaccharide interactions in maize bran. Carbohydr Polym 26:279–287 Saulnier L, Marot C, Chanliaud E, Thibault JF (1995) Cell wall polysaccharide interactions in maize bran. Carbohydr Polym 26:279–287
go back to reference Scheller HV, Ulvskov P (2010) Hemicelluloses. Annu Rev Plant Biol 61:263–289 Scheller HV, Ulvskov P (2010) Hemicelluloses. Annu Rev Plant Biol 61:263–289
go back to reference Service RF (2011) Algae’s second try. Science 333:1238–1239 Service RF (2011) Algae’s second try. Science 333:1238–1239
go back to reference Sheehan J, Camobreco V, Duffield J, Graboski M, Shapouri H (1998) Life cycle inventory of biodiesel and petroleum diesel for use in an urban bus. National Renewable Energy Lab., Golden, NREL Publ. No. SR-580-24089 Sheehan J, Camobreco V, Duffield J, Graboski M, Shapouri H (1998) Life cycle inventory of biodiesel and petroleum diesel for use in an urban bus. National Renewable Energy Lab., Golden, NREL Publ. No. SR-580-24089
go back to reference Sjostrom E (1993) Wood chemistry: fundamentals and applications, 2nd edn. Academic press, San Diego, p 292 Sjostrom E (1993) Wood chemistry: fundamentals and applications, 2nd edn. Academic press, San Diego, p 292
go back to reference Skinner KA, Leathers TD (2004) Bacterial contaminants of fuel ethanol production. J Ind Microbiol Biotechnol 31:401–408 Skinner KA, Leathers TD (2004) Bacterial contaminants of fuel ethanol production. J Ind Microbiol Biotechnol 31:401–408
go back to reference Somerville C (2006) The billion-ton biofuels vision. Science 312:1277 Somerville C (2006) The billion-ton biofuels vision. Science 312:1277
go back to reference Stephenson PG, Moore CM, Terry MJ, Zubkov MV, Bibby TS (2011) Improving photosynthesis for algal biofuels: toward a green revolution. Trends Biotechnol 29:615–623 Stephenson PG, Moore CM, Terry MJ, Zubkov MV, Bibby TS (2011) Improving photosynthesis for algal biofuels: toward a green revolution. Trends Biotechnol 29:615–623
go back to reference Sterjiades R, Dean JFD, Eriksson K-EL (1992) Laccase from sycamore maple ( Acev pseudoplatnnus) polymerizes monolignols. Plant Physiol 99:1162–1168 Sterjiades R, Dean JFD, Eriksson K-EL (1992) Laccase from sycamore maple ( Acev pseudoplatnnus) polymerizes monolignols. Plant Physiol 99:1162–1168
go back to reference Sterling JD, Atmodjo MA, Inwood SE, Kolli VSK, Quigley HF, Hahn MG, Mohnen D (2006) Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galactosyltransferase. Proc Natl Acad Sci U S A 103:5236–5241 Sterling JD, Atmodjo MA, Inwood SE, Kolli VSK, Quigley HF, Hahn MG, Mohnen D (2006) Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galactosyltransferase. Proc Natl Acad Sci U S A 103:5236–5241
go back to reference Sun Y, Cheng JJ (2002) Hydrolysis of lignocellulosic materials for ethanol production: a review. Bioresour Technol 83:1–11 Sun Y, Cheng JJ (2002) Hydrolysis of lignocellulosic materials for ethanol production: a review. Bioresour Technol 83:1–11
go back to reference Svetlichnyi VA, Svetlichnaya TP, Chernykh NA, Zavarzin GA (1990) Anaerocellum thermophilum gen. nov., sp. nov., an extremely thermophilic cellulolytic eubacterium isolated from hot-springs in the valley of Geysers. Microbiology 59:598–604 Svetlichnyi VA, Svetlichnaya TP, Chernykh NA, Zavarzin GA (1990) Anaerocellum thermophilum gen. nov., sp. nov., an extremely thermophilic cellulolytic eubacterium isolated from hot-springs in the valley of Geysers. Microbiology 59:598–604
go back to reference Taherzadeh MJ, Karimi K (2008) Pretreatment of lignocellulosic wastes to improve ethanol and biogas production: a review. Int J Mol Sci 9:1621–1651 Taherzadeh MJ, Karimi K (2008) Pretreatment of lignocellulosic wastes to improve ethanol and biogas production: a review. Int J Mol Sci 9:1621–1651
go back to reference Thomsen MH, Thygesen A, Thomsen AB (2008) Hydrothermal treatment of wheat straw at pilot plant scale using a three-step reactor system aiming at high hemicellulose recovery, high cellulose digestibility and low lignin hydrolysis. Bioresour Technol 99:4221–4228 Thomsen MH, Thygesen A, Thomsen AB (2008) Hydrothermal treatment of wheat straw at pilot plant scale using a three-step reactor system aiming at high hemicellulose recovery, high cellulose digestibility and low lignin hydrolysis. Bioresour Technol 99:4221–4228
go back to reference Tilman D, Hill J, Lehman C (2006) Carbon-negative biofuels from low-input high-diversity grassland biomass. Science 314:1598–1600 Tilman D, Hill J, Lehman C (2006) Carbon-negative biofuels from low-input high-diversity grassland biomass. Science 314:1598–1600
go back to reference Touzel J-P, Chabbert B, Monties B, Debeire P, Cathala B (2003) Synthesis and characterisation of dehydrogenation polymers in Gluconacetobacter xylinus cellulose and cellulose/pectin composite. J Agri Food Chem 51:981–986 Touzel J-P, Chabbert B, Monties B, Debeire P, Cathala B (2003) Synthesis and characterisation of dehydrogenation polymers in Gluconacetobacter xylinus cellulose and cellulose/pectin composite. J Agri Food Chem 51:981–986
go back to reference Trumbly RJ (1992) Glucose repression in the yeast Saccharomyces cerevisiae. Mol Microbiol 6:15–21 Trumbly RJ (1992) Glucose repression in the yeast Saccharomyces cerevisiae. Mol Microbiol 6:15–21
go back to reference Tsekos I (1999) The sites of cellulose synthesis in algae: diversity and evolution of cellulose-synthesizing enzyme complexes. J Phycol 35:635–655 Tsekos I (1999) The sites of cellulose synthesis in algae: diversity and evolution of cellulose-synthesizing enzyme complexes. J Phycol 35:635–655
go back to reference U. S. DOE (2006) Breaking the biological barriers to cellulosic ethanol: a joint research agenda, DOE/SC/EE-0095, U.S. Department of Energy Office of Science and Office of Energy Efficiency and Renewable Energy U. S. DOE (2006) Breaking the biological barriers to cellulosic ethanol: a joint research agenda, DOE/SC/EE-0095, U.S. Department of Energy Office of Science and Office of Energy Efficiency and Renewable Energy
go back to reference van Maris AJ, Abbott DA, Bellissimi E, van den Brink J, Kuyper M, Luttik MA, Wisselink HW, Scheffers WA, van Dijken JP, Pronk JT (2006) Alcohol fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae, current status. Anttonie Van Leeuwenhoek 90:391–418 van Maris AJ, Abbott DA, Bellissimi E, van den Brink J, Kuyper M, Luttik MA, Wisselink HW, Scheffers WA, van Dijken JP, Pronk JT (2006) Alcohol fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae, current status. Anttonie Van Leeuwenhoek 90:391–418
go back to reference Versele M, Thevelein JM, Van Dijck P (2004) The high general stress resistance of the Saccharomyces cerevisiae fill adenylate cyclase mutant (CyrI(Lys1682)) is only partially dependent on trehalose, Hsp104 and overexpression of Msn2/4-regulated genes. Yeast 21:75–86 Versele M, Thevelein JM, Van Dijck P (2004) The high general stress resistance of the Saccharomyces cerevisiae fill adenylate cyclase mutant (CyrI(Lys1682)) is only partially dependent on trehalose, Hsp104 and overexpression of Msn2/4-regulated genes. Yeast 21:75–86
go back to reference Walfridsson M, Bao X, Anderlund M, Lilius G, Bülow L, Hahn-Hägerdal B (1996) Ethanolic fermentation of xylose with Saccharomyces cerevisiae harboring the Thermus thermophilis xylA gene, which expresses an active xylose (glucose) isomerase. Appl Environ Microbiol 62:4648–4651 Walfridsson M, Bao X, Anderlund M, Lilius G, Bülow L, Hahn-Hägerdal B (1996) Ethanolic fermentation of xylose with Saccharomyces cerevisiae harboring the Thermus thermophilis xylA gene, which expresses an active xylose (glucose) isomerase. Appl Environ Microbiol 62:4648–4651
go back to reference Watanabe T, Koshijima T (1988) Evidence for an ester linkage between lignin and glucuronic-acid in lignin carbohydrate complexes by DDQ-oxidation. Agric Biol Chem 52:2953–2955 Watanabe T, Koshijima T (1988) Evidence for an ester linkage between lignin and glucuronic-acid in lignin carbohydrate complexes by DDQ-oxidation. Agric Biol Chem 52:2953–2955
go back to reference Whitney SEC, Brigham JE, Darke A, Reid JSG, Gidley MJ (1995) In vitro assembly of cellulose/xyloglucan networks: ultrastructural and molecular aspects. Plant J 8:491–504 Whitney SEC, Brigham JE, Darke A, Reid JSG, Gidley MJ (1995) In vitro assembly of cellulose/xyloglucan networks: ultrastructural and molecular aspects. Plant J 8:491–504
go back to reference Whitney SEC, Brigham JE, Darke A, Reid JSG, Gidley MJ (1998) Structural aspects of the interaction of mannan-based polysaccharides with bacterial cellulose. Carbohydr Res 307:299–309 Whitney SEC, Brigham JE, Darke A, Reid JSG, Gidley MJ (1998) Structural aspects of the interaction of mannan-based polysaccharides with bacterial cellulose. Carbohydr Res 307:299–309
go back to reference Whitney SEC, Gothard MGE, Mitchell JT, Gidley MJ (1999) Roles of cellulose and xyloglucan in determining the mechanical properties of plant cell walls. Plant Physiol 121:657–663 Whitney SEC, Gothard MGE, Mitchell JT, Gidley MJ (1999) Roles of cellulose and xyloglucan in determining the mechanical properties of plant cell walls. Plant Physiol 121:657–663
go back to reference Whitney SEC, Wilson E, Webster J, Bacic A, Gidley MJ (2006) Effects of structural variation in xyloglucan polymers on interactions with bacterial cellulose. Am J Bot 93:1402–1414 Whitney SEC, Wilson E, Webster J, Bacic A, Gidley MJ (2006) Effects of structural variation in xyloglucan polymers on interactions with bacterial cellulose. Am J Bot 93:1402–1414
go back to reference Wightman R, Turner S (2010) Trafficking of the plant cellulose synthase complex. Plant Physiol 153:427–432 Wightman R, Turner S (2010) Trafficking of the plant cellulose synthase complex. Plant Physiol 153:427–432
go back to reference Wu AM, Rihouey C, Seveno M, Hornblad E, Singh SK, Matsunaga T, Ishii T, Lerouge P, Marchant A (2009) The Arabidopsis IRX10 and IRX10-like glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation. Plant J 57:718–731 Wu AM, Rihouey C, Seveno M, Hornblad E, Singh SK, Matsunaga T, Ishii T, Lerouge P, Marchant A (2009) The Arabidopsis IRX10 and IRX10-like glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation. Plant J 57:718–731
go back to reference Wu Y, Williams M, Bernard S, Driouich A, Showalter AM, Faik A (2010a) Functional identification of two nonredundant Arabidopsis α(1,2)fucosyltransferases specific to arabinogalactan proteins. J Biol Chem 285:13638–13645 Wu Y, Williams M, Bernard S, Driouich A, Showalter AM, Faik A (2010a) Functional identification of two nonredundant Arabidopsis α(1,2)fucosyltransferases specific to arabinogalactan proteins. J Biol Chem 285:13638–13645
go back to reference Wu AM, Hornblad E, Voxeur A, Gerber L, Rihouey C, Lerouge P, Marchant A (2010b) Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L pairs of glycosyltransferase genes reveals critical contributions to biosynthesis of the hemicellulose glucuronoxylan. Plant Physiol 153:542–554 Wu AM, Hornblad E, Voxeur A, Gerber L, Rihouey C, Lerouge P, Marchant A (2010b) Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L pairs of glycosyltransferase genes reveals critical contributions to biosynthesis of the hemicellulose glucuronoxylan. Plant Physiol 153:542–554
go back to reference Xu P, Donaldson LA, Gergely ZR, Staehelin LA (2007) Dual-axis electron tomography: a new approach for investigating the spatial organization of wood cellulose microfibrils. Wood Sci Technol 41:101–116 Xu P, Donaldson LA, Gergely ZR, Staehelin LA (2007) Dual-axis electron tomography: a new approach for investigating the spatial organization of wood cellulose microfibrils. Wood Sci Technol 41:101–116
go back to reference Yang S-J, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MWW (2009) Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the Thermophilic Anaerobe “Anaerocellum thermophilum” DSM 6725. Appl Envir Microbiol 75:4762–4769 Yang S-J, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MWW (2009) Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the Thermophilic Anaerobe “Anaerocellum thermophilum” DSM 6725. Appl Envir Microbiol 75:4762–4769
go back to reference Yuan JS, Tiller KH, Al-Ahmad H, Stewart NR, Stewart NC (2008) Plants to power: bioenergy to fuel the future. Trends Plant Sci 13:421–429 Yuan JS, Tiller KH, Al-Ahmad H, Stewart NR, Stewart NC (2008) Plants to power: bioenergy to fuel the future. Trends Plant Sci 13:421–429
go back to reference Zandleven J, Beldman G, Bosveld M, Schols HA, Voragen AGJ (2006) Enzymatic degradation studies of xylogalacturonans from apple and potato, using xylogalacturonan hydrolase. Carbohydr Polym 65:495–503 Zandleven J, Beldman G, Bosveld M, Schols HA, Voragen AGJ (2006) Enzymatic degradation studies of xylogalacturonans from apple and potato, using xylogalacturonan hydrolase. Carbohydr Polym 65:495–503
go back to reference Zhang YHP, Ding ST, Mielenz JR, Cui JB, Elander RT, Laser M, Himmel ME, McMillan JR, Lynd LR (2007) Fractionating recalcitrant lignocellulose at modest reaction conditions. Biotechnol Bioeng 97:214–223 Zhang YHP, Ding ST, Mielenz JR, Cui JB, Elander RT, Laser M, Himmel ME, McMillan JR, Lynd LR (2007) Fractionating recalcitrant lignocellulose at modest reaction conditions. Biotechnol Bioeng 97:214–223
Metadata
Title
“Plant Cell Wall Structure-Pretreatment” the Critical Relationship in Biomass Conversion to Fermentable Sugars
Author
Ahmed Faik
Copyright Year
2013
Publisher
Springer Netherlands
DOI
https://doi.org/10.1007/978-94-007-6052-3_1