Skip to main content
Top
Published in: Distributed and Parallel Databases 2/2019

17-07-2018

Scalable and flexible management of medical image big data

Authors: Dejun Teng, Jun Kong, Fusheng Wang

Published in: Distributed and Parallel Databases | Issue 2/2019

Log in

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

Digital imaging plays a critical role for image guided diagnosis and clinical trials, and the amount of image data is fast growing. There are two major requirements for image data management: scalability for massive scales and support of comprehensive queries. Traditional Picture Archiving and Communication Systems (PACS for short) are based on relational data management systems and suffer from limited scalability and query support. Therefore, new systems that support fast, scalable and comprehensive queries on image data are highly demanded. In this paper, we introduce two alternative approaches: DCMRL/XMLStore (RL/XML for short)—a parallel, hybrid relational and XML data management approach, and DCMDocStore (DOC for short)—a NoSQL document store approach. DCMRL/XMLStore manages DICOM images as binary large objects and metadata as relational tables and XML documents based on IBM DB2, which is parallelized through data partitioning. DCMDocStore manages DICOM metadata as JSON objects, and DICOM images as encoded attachments in MongoDB running on multiple nodes. We have delivered two open source systems DCMRL/XMLStore and DCMDocStore. Both systems support scalable data management and comprehensive queries. We also evaluated them with nearly one million DICOM images from National Biomedical Imaging Archive. The results show that, DCMDocStore demonstrates high data loading speed, high scalability and fault tolerance. DCMRL/XMLStore provides efficient queries, but comes with slower data loading. Traditional PACS systems have inherent limitations on flexible queries and scalability for massive amount of images.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
2.
go back to reference Kahn Jr., C.E., Langlotz, C.P., Channin, D.S., Rubin, D.L.: Informatics in radiology: an information model of the DICOM standard. Radiographics 31(1), 295–304 (2011)CrossRef Kahn Jr., C.E., Langlotz, C.P., Channin, D.S., Rubin, D.L.: Informatics in radiology: an information model of the DICOM standard. Radiographics 31(1), 295–304 (2011)CrossRef
3.
go back to reference Kim, K.J., Kim, B., Lee, H., Choi, H., Jeon, J.-J., Ahn, J.-H., Lee, K.H.: Predicting the fidelity of JPEG2000 compressed CT images using DICOM header information. Med. Phys. 38(12), 6449–6457 (2011)CrossRef Kim, K.J., Kim, B., Lee, H., Choi, H., Jeon, J.-J., Ahn, J.-H., Lee, K.H.: Predicting the fidelity of JPEG2000 compressed CT images using DICOM header information. Med. Phys. 38(12), 6449–6457 (2011)CrossRef
4.
go back to reference Källman, H.-E., Halsius, E., Folkesson, M., Larsson, Y., Stenström, M., Båth, M.: Automated detection of changes in patient exposure in digital projection radiography using exposure index from DICOM header metadata. Acta Oncol. 50(6), 960–965 (2011)CrossRef Källman, H.-E., Halsius, E., Folkesson, M., Larsson, Y., Stenström, M., Båth, M.: Automated detection of changes in patient exposure in digital projection radiography using exposure index from DICOM header metadata. Acta Oncol. 50(6), 960–965 (2011)CrossRef
5.
go back to reference Jahnen, A., Kohler, S., Hermen, J., Tack, D., Back, C.: Automatic computed tomography patient dose calculation using DICOM header metadata. Radiat. Protect. Dosim. 147(1–2), 317–320 (2011)CrossRef Jahnen, A., Kohler, S., Hermen, J., Tack, D., Back, C.: Automatic computed tomography patient dose calculation using DICOM header metadata. Radiat. Protect. Dosim. 147(1–2), 317–320 (2011)CrossRef
6.
go back to reference Dave, J.K., Gingold, E.L.: Extraction of CT dose information from DICOM metadata: automated matlab-based approach. Am. J. Roentgenol. 200(1), 142–145 (2013)CrossRef Dave, J.K., Gingold, E.L.: Extraction of CT dose information from DICOM metadata: automated matlab-based approach. Am. J. Roentgenol. 200(1), 142–145 (2013)CrossRef
7.
go back to reference Källman, H.-E., Halsius, E., Olsson, M., Stenström, M.: DICOM Metadata repository for technical information in digital medical images. Acta Oncol. 48(2), 285–288 (2009)CrossRef Källman, H.-E., Halsius, E., Olsson, M., Stenström, M.: DICOM Metadata repository for technical information in digital medical images. Acta Oncol. 48(2), 285–288 (2009)CrossRef
8.
go back to reference Rampado, O., Garelli, E., Zatteri, R., Escoffier, U., De Lucchi, R., Ropolo, R.: Patient dose evaluation by means of DICOM images for a direct radiography system. Radiol. Med. 113(8), 1219–1228 (2008)CrossRef Rampado, O., Garelli, E., Zatteri, R., Escoffier, U., De Lucchi, R., Ropolo, R.: Patient dose evaluation by means of DICOM images for a direct radiography system. Radiol. Med. 113(8), 1219–1228 (2008)CrossRef
11.
go back to reference Huang, H.K.: PACS and Imaging Informatics: Basic Principles and Applications, 2nd edn. Wiley-Blackwell, Hoboken (2010) Huang, H.K.: PACS and Imaging Informatics: Basic Principles and Applications, 2nd edn. Wiley-Blackwell, Hoboken (2010)
13.
go back to reference Aji, A., Wang, F., Vo, H., Lee, R., Liu, Q., Zhang, X., Saltz, J.: Hadoop-GIS: a high performance spatial data warehousing system over mapreduce. Proc VLDB Endow 6(11), 1009–1020 (2013)CrossRef Aji, A., Wang, F., Vo, H., Lee, R., Liu, Q., Zhang, X., Saltz, J.: Hadoop-GIS: a high performance spatial data warehousing system over mapreduce. Proc VLDB Endow 6(11), 1009–1020 (2013)CrossRef
14.
go back to reference Pavlo, A., Paulson, E., Rasin, A., Abadi, D.J., DeWitt, D.J., Madden, S., Stonebraker, M.: A comparison of approaches to large-scale data analysis. In: SIGMOD, pp. 165–178 (2009) Pavlo, A., Paulson, E., Rasin, A., Abadi, D.J., DeWitt, D.J., Madden, S., Stonebraker, M.: A comparison of approaches to large-scale data analysis. In: SIGMOD, pp. 165–178 (2009)
17.
go back to reference Rascovsky, S.J., Delgado, J.A., Sanz, A., Calvo, V.D., Castrillón, G.: Informatics in radiology: use of CouchDB for document-based storage of DICOM objects. Radiographics 32(3), 913–927 (2012)CrossRef Rascovsky, S.J., Delgado, J.A., Sanz, A., Calvo, V.D., Castrillón, G.: Informatics in radiology: use of CouchDB for document-based storage of DICOM objects. Radiographics 32(3), 913–927 (2012)CrossRef
19.
go back to reference Savaris, A., Harder, T., von Wangenheim, A.: Evaluating a row-store data model for full-content DICOM management. In: 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS), pp. 193–198 (2014) Savaris, A., Harder, T., von Wangenheim, A.: Evaluating a row-store data model for full-content DICOM management. In: 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS), pp. 193–198 (2014)
26.
go back to reference Beyer, K., Cochrane, R.J., Josifovski, V., Kleewein, J., Lapis, G., Lohman, G., Lyle, B., Özcan, F., Pirahesh, H., Seemann, N., Truong, T., Linden, B.V., Vickery, B., Zhang, C.: System RX: one part relational, one part XML. In: Proceedings of the 2005 ACM SIGMOD International Conference on Management of Data, Baltimore, Maryland (2005) Beyer, K., Cochrane, R.J., Josifovski, V., Kleewein, J., Lapis, G., Lohman, G., Lyle, B., Özcan, F., Pirahesh, H., Seemann, N., Truong, T., Linden, B.V., Vickery, B., Zhang, C.: System RX: one part relational, one part XML. In: Proceedings of the 2005 ACM SIGMOD International Conference on Management of Data, Baltimore, Maryland (2005)
27.
go back to reference DeWitt, D.J., Gray, J.: Parallel database systems: the future of high performance database processing. Commun. ACM 25(6), 85–98 (1992)CrossRef DeWitt, D.J., Gray, J.: Parallel database systems: the future of high performance database processing. Commun. ACM 25(6), 85–98 (1992)CrossRef
29.
go back to reference DeCandia, G., Hastorun, D., Jampani, M., Kakulapati, G., Lakshman, A., Pilchin, A., Sivasubramanian, S., Vosshall, P., Vogels, W.: Dynamo: amazon’s highly available key-value store. In: Proceedings of Twenty-First ACM SIGOPS Symposium on Operating Systems Principles, Stevenson, Washington, USA (2007) DeCandia, G., Hastorun, D., Jampani, M., Kakulapati, G., Lakshman, A., Pilchin, A., Sivasubramanian, S., Vosshall, P., Vogels, W.: Dynamo: amazon’s highly available key-value store. In: Proceedings of Twenty-First ACM SIGOPS Symposium on Operating Systems Principles, Stevenson, Washington, USA (2007)
31.
go back to reference Chang, F., Dean, J., Ghemawat, S., Hsieh, W.C., Wallach, D.A., Burrows, M., Chandra, T., Fikes, A., Gruber, R.E.: Bigtable: a distributed storage system for structured data. ACM Trans. Comput. Syst. 26(2), 1–26 (2008)CrossRef Chang, F., Dean, J., Ghemawat, S., Hsieh, W.C., Wallach, D.A., Burrows, M., Chandra, T., Fikes, A., Gruber, R.E.: Bigtable: a distributed storage system for structured data. ACM Trans. Comput. Syst. 26(2), 1–26 (2008)CrossRef
32.
go back to reference Garcia-Molina, H., Ullman, J.D., Widom, J.: Database Systems: The Complete Book. Prentice Hall Press, Upper Saddle River (2008) Garcia-Molina, H., Ullman, J.D., Widom, J.: Database Systems: The Complete Book. Prentice Hall Press, Upper Saddle River (2008)
33.
go back to reference Gilbert, S., Lynch, N.: Brewer’s conjecture and the feasibility of consistent, available, partition-tolerant web services. SIGACT News 33(2), 51–59 (2002)CrossRef Gilbert, S., Lynch, N.: Brewer’s conjecture and the feasibility of consistent, available, partition-tolerant web services. SIGACT News 33(2), 51–59 (2002)CrossRef
Metadata
Title
Scalable and flexible management of medical image big data
Authors
Dejun Teng
Jun Kong
Fusheng Wang
Publication date
17-07-2018
Publisher
Springer US
Published in
Distributed and Parallel Databases / Issue 2/2019
Print ISSN: 0926-8782
Electronic ISSN: 1573-7578
DOI
https://doi.org/10.1007/s10619-018-7230-8

Other articles of this Issue 2/2019

Distributed and Parallel Databases 2/2019 Go to the issue

Premium Partner