Skip to main content
Top

2019 | OriginalPaper | Chapter

13. Silicon Nanowires for DNA Sensing

Authors : Mohamed Farhat O. Hameed, A. Samy Saadeldin, Essam M. A. Elkaramany, S. S. A. Obayya

Published in: Computational Photonic Sensors

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

Highly sensitive hybrid plasmonic slot waveguide (HPSW) biosensors based on silicon on insulator (SOI) are proposed and analyzed for DNA hybridization detection. The reported designs are based on increasing the light interaction with the sensing region by using slot waveguide with plasmonic material. Due to the high index contrast and plasmonic effect, an ultrahigh optical confinement is achieved in the low-index regions which enables the detection of the smallest change in the analyte refractive index with high sensitivity. The normalized power confinement, power density, effective index of the supported modes by the HPSWs are analyzed to achieve high power confinement through the suggested biosensors, and hence, high sensitivity can be obtained. The HPSWs are also incorporated with straight slotted resonator to calculate the sensitivity of the proposed design. In this study, two different plasmonic materials (gold and titanium nitride) are used for the proposed designs. The simulation results are calculated using full vectorial finite element method (FVFEM). The reported biosensors have high sensitivity of 1890.4 nm/RIU (refractive index unit) with a detection limit of 2.65 × 10−6 RIU with gold material and 1190 nm/RIU with a detection limit of 4.2 × 10−6 RIU based on titanium nitride material, which are the highest in the literature to the best of our knowledge.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference M.F.O. Hameed, A.S. Saadeldin, E.M.A. Elkaramany, S.S.A. Obayya, Label-free highly sensitive hybrid plasmonic biosensor for the detection of DNA hybridization. J. Lightwave Technol. 1–1 (2017) M.F.O. Hameed, A.S. Saadeldin, E.M.A. Elkaramany, S.S.A. Obayya, Label-free highly sensitive hybrid plasmonic biosensor for the detection of DNA hybridization. J. Lightwave Technol. 1–1 (2017)
2.
go back to reference W. Cox, V. Singer, Fluorescent DNA hybridization probe preparation using amine modification and reactive dye coupling. Biotechniques 36, 114–122 (2004) W. Cox, V. Singer, Fluorescent DNA hybridization probe preparation using amine modification and reactive dye coupling. Biotechniques 36, 114–122 (2004)
3.
go back to reference T. Dar, J. Homola, B. Rahman, M. Rajarajan, Label-free slot-waveguide biosensor for the detection of DNA hybridization. Appl. Opt. 51, 8195–8202 (2012) T. Dar, J. Homola, B. Rahman, M. Rajarajan, Label-free slot-waveguide biosensor for the detection of DNA hybridization. Appl. Opt. 51, 8195–8202 (2012)
4.
go back to reference F. Dell’Olio’Olio, V. Passaro, Optical sensing by optimized silicon slot waveguides. Opt. Express 15, 4977–4993 (2007) F. Dell’Olio’Olio, V. Passaro, Optical sensing by optimized silicon slot waveguides. Opt. Express 15, 4977–4993 (2007)
5.
go back to reference S.S.A. Obayya, M.F.O. Hameed, N.F.F. Areed, Computational Liquid Crystal Photonics (Wiley, 2016) S.S.A. Obayya, M.F.O. Hameed, N.F.F. Areed, Computational Liquid Crystal Photonics (Wiley, 2016)
6.
go back to reference S.I. Azzam, M.F.O. Hameed, N.F.F. Areed, M.M. Abd-Elrazzak, H. El-Mikaty, S.S.A. Obayya, Proposal of an ultracompact CMOS-compatible TE-/TM-Pass polarizer based on SoI platform. 26(16), 1633–1636 (2014) S.I. Azzam, M.F.O. Hameed, N.F.F. Areed, M.M. Abd-Elrazzak, H. El-Mikaty, S.S.A. Obayya, Proposal of an ultracompact CMOS-compatible TE-/TM-Pass polarizer based on SoI platform. 26(16), 1633–1636 (2014)
7.
go back to reference B. Luff, R. Harris, J. Wilkinson, R. Wilson, D. Schiffrin, Integrated optical directional coupler biosensor.Opt. Lett. 21, 618–620 (1996) B. Luff, R. Harris, J. Wilkinson, R. Wilson, D. Schiffrin, Integrated optical directional coupler biosensor.Opt. Lett. 21, 618–620 (1996)
8.
go back to reference S.I. Azzam, M.F.O. Hameed, R.E.A. Shehata, A.M. Heikal, S.S.A. Obayya, Multichannel photonic crystal fiber surface plasmon resonance based sensor. Opt. Quantum Electron. 48(2), 142 (2016) S.I. Azzam, M.F.O. Hameed, R.E.A. Shehata, A.M. Heikal, S.S.A. Obayya, Multichannel photonic crystal fiber surface plasmon resonance based sensor. Opt. Quantum Electron. 48(2), 142 (2016)
9.
go back to reference M.F.O. Hameed, M.Y. Azab, A.M. Heikal, S.M. El-Hefnawy, S.S.A. Obayya, Highly sensitive plasmonic photonic crystal temperature sensor filled with liquid crystal. IEEE Photonics Technol. Lett. 28(1), 59–62 (2016) M.F.O. Hameed, M.Y. Azab, A.M. Heikal, S.M. El-Hefnawy, S.S.A. Obayya, Highly sensitive plasmonic photonic crystal temperature sensor filled with liquid crystal. IEEE Photonics Technol. Lett. 28(1), 59–62 (2016)
10.
go back to reference M.F.O. Hameed, Y.K.A. Alrayk, S.S.A. Obayya, Self-calibration highly sensitive photonic crystal fiber biosensor. IEEE Photonics 8(3). 1–12 (2016) M.F.O. Hameed, Y.K.A. Alrayk, S.S.A. Obayya, Self-calibration highly sensitive photonic crystal fiber biosensor. IEEE Photonics 8(3). 1–12 (2016)
11.
go back to reference L. Rindorf, J. Jenson, M. Dufva, L. Pedersen, P. Hiby, O. Bang, Photonic crystal fiber long-period gratings for biochemical sensing. Opt. Express 14, 8224–8231 (2006) L. Rindorf, J. Jenson, M. Dufva, L. Pedersen, P. Hiby, O. Bang, Photonic crystal fiber long-period gratings for biochemical sensing. Opt. Express 14, 8224–8231 (2006)
12.
go back to reference W. Hopman, P. Pottier, D. Yudistira, J. Lith, P. Lambeck, R. De La Rue, A. Driessen, H. Hoekstra, R. de Ridder, Quasi-one-dimensional photonic crystal as a compact building-block for refractometric optical sensors. IEEE J. Sel. Top. Quantum Electron. 11, 11–16 (2005) W. Hopman, P. Pottier, D. Yudistira, J. Lith, P. Lambeck, R. De La Rue, A. Driessen, H. Hoekstra, R. de Ridder, Quasi-one-dimensional photonic crystal as a compact building-block for refractometric optical sensors. IEEE J. Sel. Top. Quantum Electron. 11, 11–16 (2005)
13.
go back to reference K. Vos, I. Bartolozzi, E. Schacht, P. Bienstman, R. Baets, Silicon-on-insulator microring resonator for sensitive and label-free biosensing. Opt. Express 15, 7610–7615 (2007) K. Vos, I. Bartolozzi, E. Schacht, P. Bienstman, R. Baets, Silicon-on-insulator microring resonator for sensitive and label-free biosensing. Opt. Express 15, 7610–7615 (2007)
14.
go back to reference C. Barrios, M. Banuls, V. Gonzalez-Pedro, K. Gylfason, B. Sanchez, A. Griol, A. Maquieira, H. Sohlstrom, M. Holgado, R. Casquel, Label-free optical biosensing with slotwaveguides. Opt. Lett. 33, 708–710 (2008) C. Barrios, M. Banuls, V. Gonzalez-Pedro, K. Gylfason, B. Sanchez, A. Griol, A. Maquieira, H. Sohlstrom, M. Holgado, R. Casquel, Label-free optical biosensing with slotwaveguides. Opt. Lett. 33, 708–710 (2008)
15.
go back to reference T. Claes, J. Molera, K. De Vos, E. Schacht, R. Baets, P. Bienstman, Label-free biosensing with a slot waveguide based ring resonator in silicon on insulator. IEEE Photonics J. 1, 197–204 (2009) T. Claes, J. Molera, K. De Vos, E. Schacht, R. Baets, P. Bienstman, Label-free biosensing with a slot waveguide based ring resonator in silicon on insulator. IEEE Photonics J. 1, 197–204 (2009)
16.
go back to reference V. Passaro, F. Dell’Olio, C. Ciminelli, M. Armenise, Efficient chemical sensing by coupled slot SOI waveguides. Sens. Actuators B Chem. 150, 417–424 (2010) V. Passaro, F. Dell’Olio, C. Ciminelli, M. Armenise, Efficient chemical sensing by coupled slot SOI waveguides. Sens. Actuators B Chem. 150, 417–424 (2010)
17.
go back to reference X. Sun, D. Dai, L. Thyl´en, L. Wosinski, High-sensitivity liquid refractive-index sensor based on a mach-zehnder interferometer with a double-slot hybrid plasmonic waveguide. Opt. Express 23(20), 25688–25699 (2015) X. Sun, D. Dai, L. Thyl´en, L. Wosinski, High-sensitivity liquid refractive-index sensor based on a mach-zehnder interferometer with a double-slot hybrid plasmonic waveguide. Opt. Express 23(20), 25688–25699 (2015)
18.
go back to reference Y. Ishizaka, S. Makino, T. Fujisawa, K. Saitoh, A metal-assisted silicon slot waveguide for highly sensitive gas detection. IEEE Photonics J. 9 (2017) Y. Ishizaka, S. Makino, T. Fujisawa, K. Saitoh, A metal-assisted silicon slot waveguide for highly sensitive gas detection. IEEE Photonics J. 9 (2017)
19.
go back to reference L. Zhou, X. Sun, X. Li, J. Chen, Miniature microring resonator sensor based on a hybrid plasmonic waveguide. Sensors 11(7), 6856–6867 (2011) L. Zhou, X. Sun, X. Li, J. Chen, Miniature microring resonator sensor based on a hybrid plasmonic waveguide. Sensors 11(7), 6856–6867 (2011)
20.
go back to reference M. Kwon, Theoretical investigation of an interferometer-type plasmonic biosensor using a metal-insulator-silicon waveguide. Plasmonics 5(4), 347–354 (2010) M. Kwon, Theoretical investigation of an interferometer-type plasmonic biosensor using a metal-insulator-silicon waveguide. Plasmonics 5(4), 347–354 (2010)
21.
go back to reference V. Zenin, S. Choudhury, S. Saha, V. Shalaev, A. Boltasseva, S. Bozhevolnyi, Hybrid plasmonic waveguides formed by metal coating of dielectric ridges. Opt. Express 25(11), 12295 (2017) V. Zenin, S. Choudhury, S. Saha, V. Shalaev, A. Boltasseva, S. Bozhevolnyi, Hybrid plasmonic waveguides formed by metal coating of dielectric ridges. Opt. Express 25(11), 12295 (2017)
22.
go back to reference F. Bahrami, M. Alam, J. Aitchison, M. Mojahedi, Dual polarization measurements in the hybrid plasmonic biosensors. Plasmonics 8(2), 465–473 (2013) F. Bahrami, M. Alam, J. Aitchison, M. Mojahedi, Dual polarization measurements in the hybrid plasmonic biosensors. Plasmonics 8(2), 465–473 (2013)
23.
go back to reference J. Yun, J. Kim, K. Lee, Y. Lee, B. Lee, Numerical study on refractive index sensor based on hybrid-plasmonic mode, in Proceedings of the SPIE 10323, 25th International Conference on Optical Fiber Sensors (2017) J. Yun, J. Kim, K. Lee, Y. Lee, B. Lee, Numerical study on refractive index sensor based on hybrid-plasmonic mode, in Proceedings of the SPIE 10323, 25th International Conference on Optical Fiber Sensors (2017)
24.
go back to reference M. Zhang, B. Liu, G. Wu, D. Chen, Hybrid plasmonic microcavity with an air-filled gap for sensing applications. Opt. Commun. 380, 6–9 (2016) M. Zhang, B. Liu, G. Wu, D. Chen, Hybrid plasmonic microcavity with an air-filled gap for sensing applications. Opt. Commun. 380, 6–9 (2016)
25.
go back to reference S. Ghosh, B. Rahman, An innovative straight resonator incorporating a vertical slot as an efficient bio-chemical sensor. IEEE J. Sel. Top. Quantum Electron. 23(2) (2017) S. Ghosh, B. Rahman, An innovative straight resonator incorporating a vertical slot as an efficient bio-chemical sensor. IEEE J. Sel. Top. Quantum Electron. 23(2) (2017)
26.
go back to reference X. Li, Z. Zhang, S. Qin, T. Wang, F. Liu, M. Qiu, Y. Su, Sensitive label-free and compact biosensor based on concentric silicon-on-insulator microring resonators. Appl. Opt. 48, F90–F94 (2009) X. Li, Z. Zhang, S. Qin, T. Wang, F. Liu, M. Qiu, Y. Su, Sensitive label-free and compact biosensor based on concentric silicon-on-insulator microring resonators. Appl. Opt. 48, F90–F94 (2009)
27.
go back to reference I. Khodadad, N. Clarke, M. Khorasaninejad, D. Henneke, S. Saini, Optimization of multiple-slot waveguides for biochemical sensing. Appl. Opt. 53, 5169–5178 (2014) I. Khodadad, N. Clarke, M. Khorasaninejad, D. Henneke, S. Saini, Optimization of multiple-slot waveguides for biochemical sensing. Appl. Opt. 53, 5169–5178 (2014)
28.
go back to reference C. Viphavakit, M. Komodromos, C. Themistos, W. Mohammed, K. Kalli, B. Rahman, Optimization of a horizontal slot WG biosensor to detect DNA hybridization. Appl. Opt. 54(15), 4881–4888 (2015) C. Viphavakit, M. Komodromos, C. Themistos, W. Mohammed, K. Kalli, B. Rahman, Optimization of a horizontal slot WG biosensor to detect DNA hybridization. Appl. Opt. 54(15), 4881–4888 (2015)
29.
go back to reference M. Malinsky, K. Kelly, G. Schatz, R. Van Duyne, Chain length dependence and sensing capabilities of the localized surface plasmon resonance of silver nanoparticles chemically modified with alkanethiol self-assembled monolayers. J. Am. Chem. Soc. 123, 1471–1482 (2001) M. Malinsky, K. Kelly, G. Schatz, R. Van Duyne, Chain length dependence and sensing capabilities of the localized surface plasmon resonance of silver nanoparticles chemically modified with alkanethiol self-assembled monolayers. J. Am. Chem. Soc. 123, 1471–1482 (2001)
30.
go back to reference S. Obayya, Computational Photonics (Wiley, Chichester, West Sussex, UK, 2011) S. Obayya, Computational Photonics (Wiley, Chichester, West Sussex, UK, 2011)
31.
go back to reference S.Obayya, N. Somasiri, B. Rahman, K. Grattan, Full vectorial finite element modeling of novel polarization rotators. Opt. and Quantum Electron. 35(4), 297–312 (2003) S.Obayya, N. Somasiri, B. Rahman, K. Grattan, Full vectorial finite element modeling of novel polarization rotators. Opt. and Quantum Electron. 35(4), 297–312 (2003)
33.
go back to reference A. Krasavin, A. Zayats, Three-dimensional numerical modeling of photonic integration with dielectric-loaded SPP waveguides. Phy. Rev. B 78, 045425 (2008) A. Krasavin, A. Zayats, Three-dimensional numerical modeling of photonic integration with dielectric-loaded SPP waveguides. Phy. Rev. B 78, 045425 (2008)
34.
go back to reference A. Krasavin, A. Zayats, Passive photonic elements based on dielectric-loaded surface plasmon polariton waveguides. Appl. Phy. Lett. 90, 211101 (2007) A. Krasavin, A. Zayats, Passive photonic elements based on dielectric-loaded surface plasmon polariton waveguides. Appl. Phy. Lett. 90, 211101 (2007)
35.
go back to reference B. Steinberger, A. Hohenau, H. Ditlbacher, A. Stepanov, A. Drezet, F. Aussenegg, A. Leitner, J. Krenn, Dielectric stripes on gold as surface plasmon waveguides. Appl. Phy. Lett. 88, 094104 (2006) B. Steinberger, A. Hohenau, H. Ditlbacher, A. Stepanov, A. Drezet, F. Aussenegg, A. Leitner, J. Krenn, Dielectric stripes on gold as surface plasmon waveguides. Appl. Phy. Lett. 88, 094104 (2006)
36.
go back to reference A. Papra, N. Gadegaard, N. Larsen, Characterization of ultrathin poly(ethylene glycol) monolayers on silicon substrates. Langmuir 17, 1457–1460 (2001) A. Papra, N. Gadegaard, N. Larsen, Characterization of ultrathin poly(ethylene glycol) monolayers on silicon substrates. Langmuir 17, 1457–1460 (2001)
37.
go back to reference T. Dar, Numerical characterization of label-free optical biosensors. Ph.D. Dissertation, School of Engineering and Mathematical Sciences, City University, London, United Kingdom (2015) T. Dar, Numerical characterization of label-free optical biosensors. Ph.D. Dissertation, School of Engineering and Mathematical Sciences, City University, London, United Kingdom (2015)
38.
go back to reference A.M. Heikal, M.F.O. Hameed, S.S.A. Obayya, Improved trenched channel plasmonic waveguide. J. Lightwave Technol. 31(13), 2184–2191 (2013) A.M. Heikal, M.F.O. Hameed, S.S.A. Obayya, Improved trenched channel plasmonic waveguide. J. Lightwave Technol. 31(13), 2184–2191 (2013)
39.
go back to reference G. Naik, V. Shalaev, A. Boltasseva, Alternative plasmonic materials: beyond gold and silver. Adv. Mater. 25(24), 3264–3294 (2013) G. Naik, V. Shalaev, A. Boltasseva, Alternative plasmonic materials: beyond gold and silver. Adv. Mater. 25(24), 3264–3294 (2013)
40.
go back to reference M.F.O. Hameed, A.S. Saadeldin, E.M.A. Elkaramany, S.S.A. Obayya, Detection of DNA hybridization by hybrid alternative plasmonic biosensor, Proc. SPIE 10672, Nanophotonics VII, 106722H (4 May 2018); doi: 10.1117/12.2306299 M.F.O. Hameed, A.S. Saadeldin, E.M.A. Elkaramany, S.S.A. Obayya, Detection of DNA hybridization by hybrid alternative plasmonic biosensor, Proc. SPIE 10672, Nanophotonics VII, 106722H (4 May 2018); doi: 10.​1117/​12.​2306299
Metadata
Title
Silicon Nanowires for DNA Sensing
Authors
Mohamed Farhat O. Hameed
A. Samy Saadeldin
Essam M. A. Elkaramany
S. S. A. Obayya
Copyright Year
2019
DOI
https://doi.org/10.1007/978-3-319-76556-3_13