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2017 | OriginalPaper | Chapter

Unsupervised Anomaly Detection with Generative Adversarial Networks to Guide Marker Discovery

Authors : Thomas Schlegl, Philipp Seeböck, Sebastian M. Waldstein, Ursula Schmidt-Erfurth, Georg Langs

Published in: Information Processing in Medical Imaging

Publisher: Springer International Publishing

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Abstract

Obtaining models that capture imaging markers relevant for disease progression and treatment monitoring is challenging. Models are typically based on large amounts of data with annotated examples of known markers aiming at automating detection. High annotation effort and the limitation to a vocabulary of known markers limit the power of such approaches. Here, we perform unsupervised learning to identify anomalies in imaging data as candidates for markers. We propose AnoGAN, a deep convolutional generative adversarial network to learn a manifold of normal anatomical variability, accompanying a novel anomaly scoring scheme based on the mapping from image space to a latent space. Applied to new data, the model labels anomalies, and scores image patches indicating their fit into the learned distribution. Results on optical coherence tomography images of the retina demonstrate that the approach correctly identifies anomalous images, such as images containing retinal fluid or hyperreflective foci.

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Literature
1.
go back to reference Del Giorno, A., Bagnell, J.A., Hebert, M.: A discriminative framework for anomaly detection in large videos. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9909, pp. 334–349. Springer, Cham (2016). doi:10.1007/978-3-319-46454-1_21 CrossRef Del Giorno, A., Bagnell, J.A., Hebert, M.: A discriminative framework for anomaly detection in large videos. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9909, pp. 334–349. Springer, Cham (2016). doi:10.​1007/​978-3-319-46454-1_​21 CrossRef
2.
go back to reference Matteoli, S., Diani, M., Theiler, J.: An overview of background modeling for detection of targets and anomalies in hyperspectral remotely sensed imagery. IEEE J. Selected Top. Appl. Earth Obs. Remote Sens. 7(6), 2317–2336 (2014)CrossRef Matteoli, S., Diani, M., Theiler, J.: An overview of background modeling for detection of targets and anomalies in hyperspectral remotely sensed imagery. IEEE J. Selected Top. Appl. Earth Obs. Remote Sens. 7(6), 2317–2336 (2014)CrossRef
3.
go back to reference Carrera, D., Boracchi, G., Foi, A., Wohlberg, B.: Detecting anomalous structures by convolutional sparse models. In: 2015 International Joint Conference on Neural Networks (IJCNN), IEEE, pp. 1–8 (2015) Carrera, D., Boracchi, G., Foi, A., Wohlberg, B.: Detecting anomalous structures by convolutional sparse models. In: 2015 International Joint Conference on Neural Networks (IJCNN), IEEE, pp. 1–8 (2015)
4.
go back to reference Erfani, S.M., Rajasegarar, S., Karunasekera, S., Leckie, C.: High-dimensional and large-scale anomaly detection using a linear one-class SVM with deep learning. Pattern Recognit. 58, 121–134 (2016)CrossRef Erfani, S.M., Rajasegarar, S., Karunasekera, S., Leckie, C.: High-dimensional and large-scale anomaly detection using a linear one-class SVM with deep learning. Pattern Recognit. 58, 121–134 (2016)CrossRef
5.
go back to reference Pimentel, M.A., Clifton, D.A., Clifton, L., Tarassenko, L.: A review of novelty detection. Signal Process. 99, 215–249 (2014)CrossRef Pimentel, M.A., Clifton, D.A., Clifton, L., Tarassenko, L.: A review of novelty detection. Signal Process. 99, 215–249 (2014)CrossRef
6.
go back to reference Venhuizen, F.G., van Ginneken, B., Bloemen, B., van Grinsven, M.J., Philipsen, R., Hoyng, C., Theelen, T., Sánchez, C.I.: Automated age-related macular degeneration classification in OCT using unsupervised feature learning. In: SPIE Medical Imaging, International Society for Optics and Photonics, p. 94141I (2015) Venhuizen, F.G., van Ginneken, B., Bloemen, B., van Grinsven, M.J., Philipsen, R., Hoyng, C., Theelen, T., Sánchez, C.I.: Automated age-related macular degeneration classification in OCT using unsupervised feature learning. In: SPIE Medical Imaging, International Society for Optics and Photonics, p. 94141I (2015)
7.
go back to reference Schlegl, T., Waldstein, S.M., Vogl, W.-D., Schmidt-Erfurth, U., Langs, G.: Predicting semantic descriptions from medical images with convolutional neural networks. In: Ourselin, S., Alexander, D.C., Westin, C.-F., Cardoso, M.J. (eds.) IPMI 2015. LNCS, vol. 9123, pp. 437–448. Springer, Cham (2015). doi:10.1007/978-3-319-19992-4_34 CrossRef Schlegl, T., Waldstein, S.M., Vogl, W.-D., Schmidt-Erfurth, U., Langs, G.: Predicting semantic descriptions from medical images with convolutional neural networks. In: Ourselin, S., Alexander, D.C., Westin, C.-F., Cardoso, M.J. (eds.) IPMI 2015. LNCS, vol. 9123, pp. 437–448. Springer, Cham (2015). doi:10.​1007/​978-3-319-19992-4_​34 CrossRef
8.
go back to reference Seeböck, P., Waldstein, S., Klimscha, S., Gerendas, B.S., Donner, R., Schlegl, T., Schmidt-Erfurth, U., Langs, G.: Identifying and categorizing anomalies in retinal imaging data. In: NIPS 2016 MLHC Workshop. Preprint arXiv:1612.00686 (2016) Seeböck, P., Waldstein, S., Klimscha, S., Gerendas, B.S., Donner, R., Schlegl, T., Schmidt-Erfurth, U., Langs, G.: Identifying and categorizing anomalies in retinal imaging data. In: NIPS 2016 MLHC Workshop. Preprint arXiv:​1612.​00686 (2016)
9.
go back to reference Goodfellow, I., Pouget-Abadie, J., Mirza, M., Xu, B., Warde-Farley, D., Ozair, S., Courville, A., Bengio, Y.: Generative adversarial nets. In: Advances in Neural Information Processing Systems, pp. 2672–2680 (2014) Goodfellow, I., Pouget-Abadie, J., Mirza, M., Xu, B., Warde-Farley, D., Ozair, S., Courville, A., Bengio, Y.: Generative adversarial nets. In: Advances in Neural Information Processing Systems, pp. 2672–2680 (2014)
10.
go back to reference Denton, E.L., Chintala, S., Fergus, R., et al.: Deep generative image models using a Laplacian pyramid of adversarial networks. In: Advances in Neural Information Processing Systems, pp. 1486–1494 (2015) Denton, E.L., Chintala, S., Fergus, R., et al.: Deep generative image models using a Laplacian pyramid of adversarial networks. In: Advances in Neural Information Processing Systems, pp. 1486–1494 (2015)
12.
go back to reference Radford, A., Metz, L., Chintala, S.: Unsupervised representation learning with deep convolutional generative adversarial networks. arXiv:1511.06434 (2015) Radford, A., Metz, L., Chintala, S.: Unsupervised representation learning with deep convolutional generative adversarial networks. arXiv:​1511.​06434 (2015)
13.
go back to reference Yeh, R., Chen, C., Lim, T.Y., Hasegawa-Johnson, M., Do, M.N.: Semantic image inpainting with perceptual and contextual losses. arXiv:1607.07539 (2016) Yeh, R., Chen, C., Lim, T.Y., Hasegawa-Johnson, M., Do, M.N.: Semantic image inpainting with perceptual and contextual losses. arXiv:​1607.​07539 (2016)
14.
go back to reference Salimans, T., Goodfellow, I., Zaremba, W., Cheung, V., Radford, A., Chen, X.: Improved techniques for training GANs. In: Advances in Neural Information Processing Systems, pp. 2226–2234 (2016) Salimans, T., Goodfellow, I., Zaremba, W., Cheung, V., Radford, A., Chen, X.: Improved techniques for training GANs. In: Advances in Neural Information Processing Systems, pp. 2226–2234 (2016)
15.
go back to reference Garvin, M.K., Abràmoff, M.D., Wu, X., Russell, S.R., Burns, T.L., Sonka, M.: Automated 3-D intraretinal layer segmentation of macular spectral-domain optical coherence tomography images. IEEE Trans. Med. Imaging 28(9), 1436–1447 (2009)CrossRef Garvin, M.K., Abràmoff, M.D., Wu, X., Russell, S.R., Burns, T.L., Sonka, M.: Automated 3-D intraretinal layer segmentation of macular spectral-domain optical coherence tomography images. IEEE Trans. Med. Imaging 28(9), 1436–1447 (2009)CrossRef
16.
go back to reference Pathak, D., Krähenbühl, P., Donahue, J., Darrell, T., Efros, A.A.: Context encoders: Feature learning by inpainting. CoRR abs/1604.07379 (2016) Pathak, D., Krähenbühl, P., Donahue, J., Darrell, T., Efros, A.A.: Context encoders: Feature learning by inpainting. CoRR abs/1604.07379 (2016)
18.
go back to reference Abadi, M., Agarwal, A., Barham, P., Brevdo, E., Chen, Z., Citro, C., Corrado, G.S., Davis, A., Dean, J., Devin, M., Ghemawat, S., Goodfellow, I., Harp, A., Irving, G., Isard, M., Jia, Y., Jozefowicz, R., Kaiser, L., Kudlur, M., Levenberg, J., Mané, D., Monga, R., Moore, S., Murray, D., Olah, C., Schuster, M., Shlens, J., Steiner, B., Sutskever, I., Talwar, K., Tucker, P., Vanhoucke, V., Vasudevan, V., Viégas, F., Vinyals, O., Warden, P., Wattenberg, M., Wicke, M., Yu, Y., Zheng, X.: TensorFlow: large-scale machine learning on heterogeneous systems (2015). Software available from http://www.tensorflow.org Abadi, M., Agarwal, A., Barham, P., Brevdo, E., Chen, Z., Citro, C., Corrado, G.S., Davis, A., Dean, J., Devin, M., Ghemawat, S., Goodfellow, I., Harp, A., Irving, G., Isard, M., Jia, Y., Jozefowicz, R., Kaiser, L., Kudlur, M., Levenberg, J., Mané, D., Monga, R., Moore, S., Murray, D., Olah, C., Schuster, M., Shlens, J., Steiner, B., Sutskever, I., Talwar, K., Tucker, P., Vanhoucke, V., Vasudevan, V., Viégas, F., Vinyals, O., Warden, P., Wattenberg, M., Wicke, M., Yu, Y., Zheng, X.: TensorFlow: large-scale machine learning on heterogeneous systems (2015). Software available from http://​www.​tensorflow.​org
Metadata
Title
Unsupervised Anomaly Detection with Generative Adversarial Networks to Guide Marker Discovery
Authors
Thomas Schlegl
Philipp Seeböck
Sebastian M. Waldstein
Ursula Schmidt-Erfurth
Georg Langs
Copyright Year
2017
DOI
https://doi.org/10.1007/978-3-319-59050-9_12

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