Skip to main content

2014 | OriginalPaper | Buchkapitel

3. Experimental Characterization of Peptide–Surface Interactions

verfasst von : Marion J. Limo, Carole C. Perry, A. A. Thyparambil, Yang Wei, Robert A. Latour

Erschienen in: Bio-Inspired Nanotechnology

Verlag: Springer New York

Aktivieren Sie unsere intelligente Suche um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Interactions between peptides and proteins with material surfaces are fundamental to a broad range of applications in biotechnology and biomedical engineering. Many different methods have been developed to measure a range of properties that quantify these types of interactions. In this chapter, three of these methods are presented for the determination of thermodynamic parameters that characterize peptide adsorption behavior, each of which is based on a different type of measurement. These three methods are surface plasmon resonance spectroscopy (SPR; spectroscopic-based method), atomic force microscopy (AFM; force-based method), and isothermal titration calorimetry (ITC; thermal-based method). The fundamental principles underlying each of these methods are presented followed by examples of their application for the determination of thermodynamic properties for specific peptide/protein-surface systems. The SPR method is presented for the determination of the standard-state adsorption free energy from adsorption isotherms characterizing the amount of peptide adsorbed as a function of solution concentration. This method, however, is limited to materials that can be used to form nanoscale-thick films about 100 nm thick or less on a gold biosensor substrate. For materials that are not easily formed into thin films, thus not being conducive for use with SPR, an AFM method is presented that can be used with any macroscopically flat surface through the correlation of peptide desorption force measured by AFM with adsorption free energy measurements by SPR. The third approach, ITC, measures thermal energy changes on adsorption with the method being applicable to the interaction of peptides/proteins with particles suspended in solution. The combined set of methods provides the means to quantitatively determine thermodynamic properties characterizing peptide and protein adsorption behavior for materials in either their bulk or particulate form, with important application to the broad range of technologies that involve contact between biological solutions and synthetic material surfaces.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Literatur
Zurück zum Zitat Ababou A, Ladbury JE (2006) Survey of the year 2004: literature on applications of isothermal titration calorimetry. J Mol Recogn 19(1):79–89 Ababou A, Ladbury JE (2006) Survey of the year 2004: literature on applications of isothermal titration calorimetry. J Mol Recogn 19(1):79–89
Zurück zum Zitat Allison DP, Hinterdorfer P, Han W (2002) Biomolecular force measurements and the atomic force microscope. Curr Opin Biotechnol 13(1):47–51 Allison DP, Hinterdorfer P, Han W (2002) Biomolecular force measurements and the atomic force microscope. Curr Opin Biotechnol 13(1):47–51
Zurück zum Zitat Ball V, Maechling C (2009) Isothermal microcalorimetry to investigate non specific interactions in biophysical chemistry. Int J Mol Sci 10(8):3283–3315 Ball V, Maechling C (2009) Isothermal microcalorimetry to investigate non specific interactions in biophysical chemistry. Int J Mol Sci 10(8):3283–3315
Zurück zum Zitat Biltonen R, Langerman N (1979) Microcalorimetry for biological chemistry: experimental design, data analysis, and interpretation. Methods Enzymol 61:287–318 Biltonen R, Langerman N (1979) Microcalorimetry for biological chemistry: experimental design, data analysis, and interpretation. Methods Enzymol 61:287–318
Zurück zum Zitat Blanchette CD, Loui A, Ratto TV (2008) Tip functionalization: applications to chemical force spectroscopy. Handbook of Molecular Force Spectroscopy, pp 185–203 Blanchette CD, Loui A, Ratto TV (2008) Tip functionalization: applications to chemical force spectroscopy. Handbook of Molecular Force Spectroscopy, pp 185–203
Zurück zum Zitat Blankschien MD, Pretzer LA, Huschka R et al (2013) Light-triggered biocatalysis using thermophilic enzyme-gold nanoparticle complexes. ACS Nano 7(1):654–663 Blankschien MD, Pretzer LA, Huschka R et al (2013) Light-triggered biocatalysis using thermophilic enzyme-gold nanoparticle complexes. ACS Nano 7(1):654–663
Zurück zum Zitat Bouchemal K, Mazzaferro S (2012) How to conduct and interpret ITC experiments accurately for cyclodextrin-guest interactions. Drug Discov Today 17(11):623–629 Bouchemal K, Mazzaferro S (2012) How to conduct and interpret ITC experiments accurately for cyclodextrin-guest interactions. Drug Discov Today 17(11):623–629
Zurück zum Zitat Bramwell VW, Eyles JE, Oya Alpar H (2005) Particulate delivery systems for biodefense subunit vaccines. Adv Drug Deliv Rev 57:1247–1265 Bramwell VW, Eyles JE, Oya Alpar H (2005) Particulate delivery systems for biodefense subunit vaccines. Adv Drug Deliv Rev 57:1247–1265
Zurück zum Zitat Bryers JD, Giachelli CM, Ratner BD (2012) Engineering biomaterials to integrate and heal: the biocompatibility paradigm shifts. Biotechnol Bioeng 109(8):1898–1911 Bryers JD, Giachelli CM, Ratner BD (2012) Engineering biomaterials to integrate and heal: the biocompatibility paradigm shifts. Biotechnol Bioeng 109(8):1898–1911
Zurück zum Zitat Camci-Unal G, Pohl NLB (2010) Thermodynamics of binding interactions between divalent copper and chitin fragments by isothermal titration calorimetry (ITC). Carbohydr Polym 81(1):8–13 Camci-Unal G, Pohl NLB (2010) Thermodynamics of binding interactions between divalent copper and chitin fragments by isothermal titration calorimetry (ITC). Carbohydr Polym 81(1):8–13
Zurück zum Zitat Cedervall T, Lynch I, Lindman S, Berggard et al (2007) Understanding the nanoparticle-protein corona using methods to quantify exchange rates and affinities of proteins for nanoparticles. Proc Natl Acad Sci USA 104(7):2050–2055 Cedervall T, Lynch I, Lindman S, Berggard et al (2007) Understanding the nanoparticle-protein corona using methods to quantify exchange rates and affinities of proteins for nanoparticles. Proc Natl Acad Sci USA 104(7):2050–2055
Zurück zum Zitat Charles MR, Abraham ML (2003) Quanatitative modeling of protein adsorption. Biopolymers at Interfaces. M. M. Dekker, New York, pp 71–94 Charles MR, Abraham ML (2003) Quanatitative modeling of protein adsorption. Biopolymers at Interfaces. M. M. Dekker, New York, pp 71–94
Zurück zum Zitat Chen Y, Ming H (2012) Review of surface plasmon resonance and localized surface plasmon resonance sensor. Photonic Sens 2(1):37–49 Chen Y, Ming H (2012) Review of surface plasmon resonance and localized surface plasmon resonance sensor. Photonic Sens 2(1):37–49
Zurück zum Zitat Chen K, Xu Y, Rana S et al (2011) Electrostatic selectivity in protein–nanoparticle interactions. Biomacromolecules 12(7):2552–2561 Chen K, Xu Y, Rana S et al (2011) Electrostatic selectivity in protein–nanoparticle interactions. Biomacromolecules 12(7):2552–2561
Zurück zum Zitat Chiad K, Stelzig SH, Gropeanu R et al (2009) Isothermal titration calorimetry: a powerful technique to quantify interactions in polymer hybrid systems. Macromolecules 42(19):7545–7552 Chiad K, Stelzig SH, Gropeanu R et al (2009) Isothermal titration calorimetry: a powerful technique to quantify interactions in polymer hybrid systems. Macromolecules 42(19):7545–7552
Zurück zum Zitat Chilom CG, Craescu CT, Popescu AI (2004) Parameters of interaction between proteins and their specific ligands, deduced by isothermal titration calorimetry. In: Paper presented at the 5th International Balkan workshop on applied physics, pp 443–457 Chilom CG, Craescu CT, Popescu AI (2004) Parameters of interaction between proteins and their specific ligands, deduced by isothermal titration calorimetry. In: Paper presented at the 5th International Balkan workshop on applied physics, pp 443–457
Zurück zum Zitat Chiu CY, Li Y, Ruan L et al (2011) Platinum nanocrystals selectively shaped using facet-specific peptide sequences. Nat Chem 3(5):393–399 Chiu CY, Li Y, Ruan L et al (2011) Platinum nanocrystals selectively shaped using facet-specific peptide sequences. Nat Chem 3(5):393–399
Zurück zum Zitat Cho N, Cheong T, Min JH et al (2011) A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy. Nat Nanotechnol 6(10):675–682 Cho N, Cheong T, Min JH et al (2011) A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy. Nat Nanotechnol 6(10):675–682
Zurück zum Zitat Cliff MJ, Gutierrez A, Ladbury JE (2004) A survey of the year 2003 literature on applications of isothermal titration calorimetry. J Mol Recogn 17(6):513–523 Cliff MJ, Gutierrez A, Ladbury JE (2004) A survey of the year 2003 literature on applications of isothermal titration calorimetry. J Mol Recogn 17(6):513–523
Zurück zum Zitat Crespo-Quesada M, Andanson J, Yarulin A et al (2011) UV–ozone cleaning of supported poly (vinylpyrrolidone)-stabilized palladium nanocubes: effect of stabilizer removal on morphology and catalytic behavior. Langmuir 27(12):7909–7916 Crespo-Quesada M, Andanson J, Yarulin A et al (2011) UV–ozone cleaning of supported poly (vinylpyrrolidone)-stabilized palladium nanocubes: effect of stabilizer removal on morphology and catalytic behavior. Langmuir 27(12):7909–7916
Zurück zum Zitat Davis SA, Dujardin E, Mann S (2003) Biomolecular inorganic materials chemistry. Curr Opin Solid State Mater Sci 7(4–5):273–281 Davis SA, Dujardin E, Mann S (2003) Biomolecular inorganic materials chemistry. Curr Opin Solid State Mater Sci 7(4–5):273–281
Zurück zum Zitat de Mol NJ, Fischer MJ (2010) Surface plasmon resonance: a general introduction. Methods Mol Biol 627:1–14 de Mol NJ, Fischer MJ (2010) Surface plasmon resonance: a general introduction. Methods Mol Biol 627:1–14
Zurück zum Zitat De M, You C, Srivastava S et al (2007) Biomimetic interactions of proteins with functionalized nanoparticles: a thermodynamic study. J Am Chem Soc 129(35):10747–10753 De M, You C, Srivastava S et al (2007) Biomimetic interactions of proteins with functionalized nanoparticles: a thermodynamic study. J Am Chem Soc 129(35):10747–10753
Zurück zum Zitat Dickerson MB, Sandhage KH, Naik RR (2008) Protein-and peptide-directed syntheses of inorganic materials. Chem Rev 108(11):4935–4978 Dickerson MB, Sandhage KH, Naik RR (2008) Protein-and peptide-directed syntheses of inorganic materials. Chem Rev 108(11):4935–4978
Zurück zum Zitat Dujardin E, Mann S (2002) Bio-inspired materials chemistry. Adv Mater 14(11):775 Dujardin E, Mann S (2002) Bio-inspired materials chemistry. Adv Mater 14(11):775
Zurück zum Zitat Everett DH (1964) Thermodynamics of adsorption from solution. Part 1. Perfect systems. Trans Faraday Soc 60:1803–1813 Everett DH (1964) Thermodynamics of adsorption from solution. Part 1. Perfect systems. Trans Faraday Soc 60:1803–1813
Zurück zum Zitat Fears KP, Creager SE, Latour RA (2008) Determination of the surface pK of carboxylic- and amine-terminated alkanethiols using surface plasmon resonance spectroscopy. Langmuir 24(3):837–843 Fears KP, Creager SE, Latour RA (2008) Determination of the surface pK of carboxylic- and amine-terminated alkanethiols using surface plasmon resonance spectroscopy. Langmuir 24(3):837–843
Zurück zum Zitat Fenoglio I, Fubini B, Ghibaudi EM et al (2011) Multiple aspects of the interaction of biomacromolecules with inorganic surfaces. Adv Drug Deliv Rev 63(13):1186–1209 Fenoglio I, Fubini B, Ghibaudi EM et al (2011) Multiple aspects of the interaction of biomacromolecules with inorganic surfaces. Adv Drug Deliv Rev 63(13):1186–1209
Zurück zum Zitat Freyer MW, Lewis EA (2008) Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions. Methods Cell Biol 84:79–113 Freyer MW, Lewis EA (2008) Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions. Methods Cell Biol 84:79–113
Zurück zum Zitat Gandavarapu NR, Mariner PD, Schwartz MP et al (2013) Extracellular matrix protein adsorption to phosphate-functionalized gels from serum promotes osteogenic differentiation of human mesenchymal stem cells. Acta Biomater 9(1):4525–4534 Gandavarapu NR, Mariner PD, Schwartz MP et al (2013) Extracellular matrix protein adsorption to phosphate-functionalized gels from serum promotes osteogenic differentiation of human mesenchymal stem cells. Acta Biomater 9(1):4525–4534
Zurück zum Zitat Garcia AJ (2006) Interfaces to control cell-biomaterial adhesive interactions. Polymers for Regenerative Medicine. C. Werner, J. H. Eisseeff, C. Fischbachet al:171–190 Garcia AJ (2006) Interfaces to control cell-biomaterial adhesive interactions. Polymers for Regenerative Medicine. C. Werner, J. H. Eisseeff, C. Fischbachet al:171–190
Zurück zum Zitat Geelhood SJ, Horbett TA, Ward WK et al (2007) Passivating protein coatings for implantable glucose sensors: evaluation of protein retention. J Biomed Mater Res B 81B(1):251–260 Geelhood SJ, Horbett TA, Ward WK et al (2007) Passivating protein coatings for implantable glucose sensors: evaluation of protein retention. J Biomed Mater Res B 81B(1):251–260
Zurück zum Zitat Goobes G, Goobes R, Shaw WJ et al (2007) The structure, dynamics, and energetics of protein adsorption—lessons learned from adsorption of statherin to hydroxyapatite. Magn Reson Chem 45(S1):S32–S47 Goobes G, Goobes R, Shaw WJ et al (2007) The structure, dynamics, and energetics of protein adsorption—lessons learned from adsorption of statherin to hydroxyapatite. Magn Reson Chem 45(S1):S32–S47
Zurück zum Zitat Goobes R, Goobes G, Shaw WJ et al (2007) Thermodynamic roles of basic amino acids in statherin recognition of hydroxyapatite. Biochemistry 46(16):4725–4733 Goobes R, Goobes G, Shaw WJ et al (2007) Thermodynamic roles of basic amino acids in statherin recognition of hydroxyapatite. Biochemistry 46(16):4725–4733
Zurück zum Zitat Gourishankar A, Shukla S, Ganesh KN et al (2004) Isothermal titration calorimetry studies on the binding of DNA bases and PNA base monomers to gold nanoparticles. J Am Chem Soc 126(41):13186–13187 Gourishankar A, Shukla S, Ganesh KN et al (2004) Isothermal titration calorimetry studies on the binding of DNA bases and PNA base monomers to gold nanoparticles. J Am Chem Soc 126(41):13186–13187
Zurück zum Zitat Green RJ, Frazier RA, Shakesheff KM et al (2000) Surface plasmon resonance analysis of dynamic biological interactions with biomaterials. Biomaterials 21(18):1823–1835 Green RJ, Frazier RA, Shakesheff KM et al (2000) Surface plasmon resonance analysis of dynamic biological interactions with biomaterials. Biomaterials 21(18):1823–1835
Zurück zum Zitat Gref R, Domb A, Quellec P et al (2012) The controlled intravenous delivery of drugs using PEG-coated sterically stabilized nanospheres. Adv Drug Deliv Rev 64:316–326 Gref R, Domb A, Quellec P et al (2012) The controlled intravenous delivery of drugs using PEG-coated sterically stabilized nanospheres. Adv Drug Deliv Rev 64:316–326
Zurück zum Zitat Haruki M, Noguchi E, Kanaya S et al (1997) Kinetic and stoichiometric analysis for the binding of Escherichia coli ribonuclease HI to RNA–DNA hybrids using surface plasmon resonance. J Biol Chem 272(35):22015–22022 Haruki M, Noguchi E, Kanaya S et al (1997) Kinetic and stoichiometric analysis for the binding of Escherichia coli ribonuclease HI to RNA–DNA hybrids using surface plasmon resonance. J Biol Chem 272(35):22015–22022
Zurück zum Zitat Herr AE (2009). Protein microarrays for the dectection of biothreats. In: Dill RHLK, Grodzinski P (eds) Microarrays. Preparation, microfluidics, detection methods, and biological applications. Springer, New York, pp 169–190 Herr AE (2009). Protein microarrays for the dectection of biothreats. In: Dill RHLK, Grodzinski P (eds) Microarrays. Preparation, microfluidics, detection methods, and biological applications. Springer, New York, pp 169–190
Zurück zum Zitat Hoffmann F, Cornelius M, Morell J et al (2006) Silica-based mesoporous organic–inorganic hybrid materials. Angew Chem Int Ed 45(20):3216–3251 Hoffmann F, Cornelius M, Morell J et al (2006) Silica-based mesoporous organic–inorganic hybrid materials. Angew Chem Int Ed 45(20):3216–3251
Zurück zum Zitat Homola J, Yee SS, Gauglitz G (1999) Surface plasmon resonance sensors: review. Sens Actuators B Cheml 54(1–2):3–15 Homola J, Yee SS, Gauglitz G (1999) Surface plasmon resonance sensors: review. Sens Actuators B Cheml 54(1–2):3–15
Zurück zum Zitat Horinek D, Serr A, Geisler M et al (2008) Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces. Proc Natl Acad Sci U S A 105(8):2842–2847 Horinek D, Serr A, Geisler M et al (2008) Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces. Proc Natl Acad Sci U S A 105(8):2842–2847
Zurück zum Zitat Huang R, Carney R, Stellacci F et al (2013) Protein-nanoparticle interactions: the effects of surface compositional and structural heterogeneity is scale dependent. Nanoscale 5:6928–6935 Huang R, Carney R, Stellacci F et al (2013) Protein-nanoparticle interactions: the effects of surface compositional and structural heterogeneity is scale dependent. Nanoscale 5:6928–6935
Zurück zum Zitat Jana NR, Gearheart L, Murphy CJ (2001) Seeding growth for size control of 5–40 nm diameter gold nanoparticles. Langmuir 17(22):6782–6786 Jana NR, Gearheart L, Murphy CJ (2001) Seeding growth for size control of 5–40 nm diameter gold nanoparticles. Langmuir 17(22):6782–6786
Zurück zum Zitat Jiang X, Ortiz C, Hammond PT (2002) Exploring the rules for selective deposition: Interactions of model polyamines on acid and oligoethylene oxide surfaces. Langmuir 18(4):1131–1143 Jiang X, Ortiz C, Hammond PT (2002) Exploring the rules for selective deposition: Interactions of model polyamines on acid and oligoethylene oxide surfaces. Langmuir 18(4):1131–1143
Zurück zum Zitat Joshi H, Shirude PS, Bansal V et al (2004) Isothermal titration calorimetry studies on the binding of amino acids to gold nanoparticles. J Phys Chem B 108(31):11535–11540 Joshi H, Shirude PS, Bansal V et al (2004) Isothermal titration calorimetry studies on the binding of amino acids to gold nanoparticles. J Phys Chem B 108(31):11535–11540
Zurück zum Zitat Jung LS, Nelson KE, Campbell CT et al (1999) Surface plasmon resonance measurement of binding and dissociation of wild-type and mutant streptavidin on mixed biotin-containing alkylthiolate monolayers. Sens Actuators B Chem 54(1–2):137 Jung LS, Nelson KE, Campbell CT et al (1999) Surface plasmon resonance measurement of binding and dissociation of wild-type and mutant streptavidin on mixed biotin-containing alkylthiolate monolayers. Sens Actuators B Chem 54(1–2):137
Zurück zum Zitat Karlsen V, Heggset EB, Sørlie M (2010) The use of isothermal titration calorimetry to determine the thermodynamics of metal ion binding to low-cost sorbents. Thermochim Acta 501(1–2):119–121 Karlsen V, Heggset EB, Sørlie M (2010) The use of isothermal titration calorimetry to determine the thermodynamics of metal ion binding to low-cost sorbents. Thermochim Acta 501(1–2):119–121
Zurück zum Zitat Kasemo B, Gold J (1999) Implant surfaces and interface processes. Adv Dent Res 13:8–20 Kasemo B, Gold J (1999) Implant surfaces and interface processes. Adv Dent Res 13:8–20
Zurück zum Zitat Kidoaki S, Matsuda T (2002) Mechanistic aspects of protein/material interactions probed by atomic force microscopy. Colloids Surf B 23(2–3):153–163 Kidoaki S, Matsuda T (2002) Mechanistic aspects of protein/material interactions probed by atomic force microscopy. Colloids Surf B 23(2–3):153–163
Zurück zum Zitat Klein J (2007) Probing the interactions of proteins and nanoparticles. Proc Natl Acad Sci 104(7):2029–2030 Klein J (2007) Probing the interactions of proteins and nanoparticles. Proc Natl Acad Sci 104(7):2029–2030
Zurück zum Zitat Knowles JR (1991) Enzyme catalysis: not different, just better. Nature 350:121–124 Knowles JR (1991) Enzyme catalysis: not different, just better. Nature 350:121–124
Zurück zum Zitat Kratochvil D, Volesky B (1998) Advances in the biosorption of heavy metals. Trends Biotechnol 16(7):291–300 Kratochvil D, Volesky B (1998) Advances in the biosorption of heavy metals. Trends Biotechnol 16(7):291–300
Zurück zum Zitat Kröger N, Deutzmann R, Sumper M (1999) Polycationic peptides from diatom biosilica that direct silica nanosphere formation. Science 286(5442):1129–1132 Kröger N, Deutzmann R, Sumper M (1999) Polycationic peptides from diatom biosilica that direct silica nanosphere formation. Science 286(5442):1129–1132
Zurück zum Zitat Kumar A, Mandal S, Pasricha R et al (2003) Investigation into the interaction between surface bound alkylamines and gold nanoparticles. Langmuir 19(15):6277–6282 Kumar A, Mandal S, Pasricha R et al (2003) Investigation into the interaction between surface bound alkylamines and gold nanoparticles. Langmuir 19(15):6277–6282
Zurück zum Zitat Ladbury JE, Doyle ML (2005) Biocalorimetry 2: applications of calorimetry in the biological sciences. Wiley, Chichester Ladbury JE, Doyle ML (2005) Biocalorimetry 2: applications of calorimetry in the biological sciences. Wiley, Chichester
Zurück zum Zitat Lal R, John SA (1994) Biological applications of atomic force microscopy. Am J Physiol Cell Physiol 266(1):C1–C21 Lal R, John SA (1994) Biological applications of atomic force microscopy. Am J Physiol Cell Physiol 266(1):C1–C21
Zurück zum Zitat Lan Q, Bassi AS, Zhu J-X et al (2001) A modified Langmuir model for the prediction of the effects of ionic strength on the equilibrium characteristics of protein adsorption onto ion exchange/affinity adsorbents. Chem Eng J 81:179–186 Lan Q, Bassi AS, Zhu J-X et al (2001) A modified Langmuir model for the prediction of the effects of ionic strength on the equilibrium characteristics of protein adsorption onto ion exchange/affinity adsorbents. Chem Eng J 81:179–186
Zurück zum Zitat Langmuir I (1916) The constitution and fundamental properties of solids and liquids. part i. solids. J Am Chem Soc 38:2221–2295 Langmuir I (1916) The constitution and fundamental properties of solids and liquids. part i. solids. J Am Chem Soc 38:2221–2295
Zurück zum Zitat Latour RA (2008) Molecular dynamics simulation of protein-surface interactions: benefits, problems, solutions, and future directions. Biointerphases 3:FC2–FC12 Latour RA (2008) Molecular dynamics simulation of protein-surface interactions: benefits, problems, solutions, and future directions. Biointerphases 3:FC2–FC12
Zurück zum Zitat Leavitt S, Freire E (2001) Direct measurement of protein binding energetics by isothermal titration calorimetry. Curr Opin Struct Biol 11(5):560–566 Leavitt S, Freire E (2001) Direct measurement of protein binding energetics by isothermal titration calorimetry. Curr Opin Struct Biol 11(5):560–566
Zurück zum Zitat Li X, Husson SM (2006) Adsorption of dansylated amino acids on molecularly imprinted surfaces: a surface plasmon resonance study. Biosens Bioelectron 22(3):336–348 Li X, Husson SM (2006) Adsorption of dansylated amino acids on molecularly imprinted surfaces: a surface plasmon resonance study. Biosens Bioelectron 22(3):336–348
Zurück zum Zitat Liang Y (2008) Applications of isothermal titration calorimetry in protein science. Acta Biochim Biophys Sin 40(7):565–576 Liang Y (2008) Applications of isothermal titration calorimetry in protein science. Acta Biochim Biophys Sin 40(7):565–576
Zurück zum Zitat Liang M, Deschaume O, Patwardhan SV et al (2011) Direct evidence of ZnO morphology modification via the selective adsorption of ZnO-binding peptides. J Mater Chem 21(1):80–89 Liang M, Deschaume O, Patwardhan SV et al (2011) Direct evidence of ZnO morphology modification via the selective adsorption of ZnO-binding peptides. J Mater Chem 21(1):80–89
Zurück zum Zitat Lindman S, Lynch I, Thulin E et al (2007) Systematic investigation of the thermodynamics of HSA adsorption to N-iso-propylacrylamide/N-tert-butylacrylamide copolymer nanoparticles. Effects of particle size and hydrophobicity. Nano Lett 7(4):914–920 Lindman S, Lynch I, Thulin E et al (2007) Systematic investigation of the thermodynamics of HSA adsorption to N-iso-propylacrylamide/N-tert-butylacrylamide copolymer nanoparticles. Effects of particle size and hydrophobicity. Nano Lett 7(4):914–920
Zurück zum Zitat Liu HN, Webster TJ (2010) Ceramic/polymer nanocomposites with tunable drug delivery capability at specific disease sites. J Biomed Mater Res A 93A(3):1180–1192 Liu HN, Webster TJ (2010) Ceramic/polymer nanocomposites with tunable drug delivery capability at specific disease sites. J Biomed Mater Res A 93A(3):1180–1192
Zurück zum Zitat Loomans E, Beumer TAM, Damen KCS et al (1997) Real-time monitoring of peptide-surface and peptide-antibody interaction by means of reflectometry and surface plasmon resonance. J Colloid Interface Sci 192(1):238–249 Loomans E, Beumer TAM, Damen KCS et al (1997) Real-time monitoring of peptide-surface and peptide-antibody interaction by means of reflectometry and surface plasmon resonance. J Colloid Interface Sci 192(1):238–249
Zurück zum Zitat Lynch I, Dawson KA (2008) Protein-nanoparticle interactions. Nano Today 3(1):40–47 Lynch I, Dawson KA (2008) Protein-nanoparticle interactions. Nano Today 3(1):40–47
Zurück zum Zitat Mahmood TA, Miot S, Frank O et al (2006) Modulation of chondrocyte phenotype for tissue engineering by designing the biologic-polymer carrier interface. Biomacromolecules 7(11):3012–3018 Mahmood TA, Miot S, Frank O et al (2006) Modulation of chondrocyte phenotype for tissue engineering by designing the biologic-polymer carrier interface. Biomacromolecules 7(11):3012–3018
Zurück zum Zitat Mahmoudi M, Lynch I, Ejtehadi MR et al (2011) Protein-nanoparticle interactions: opportunities and challenges. Chem Rev 111(9):5610–5637 Mahmoudi M, Lynch I, Ejtehadi MR et al (2011) Protein-nanoparticle interactions: opportunities and challenges. Chem Rev 111(9):5610–5637
Zurück zum Zitat Martinez JC, Murciano-Calles J, Cobos ES et al (2013) Isothermal titration calorimetry: thermodynamic analysis of the binding thermograms of molecular recognition events by using equilibrium models. In: Elkordy AA (ed) Chapter 4, Applications of Calorimetry in a Wide Context-Differential Scanning Calorimetry, Isothermal Titration Calorimetry and Microcalorimetry. InTech—Open Access Company, pp 73–104 Martinez JC, Murciano-Calles J, Cobos ES et al (2013) Isothermal titration calorimetry: thermodynamic analysis of the binding thermograms of molecular recognition events by using equilibrium models. In: Elkordy AA (ed) Chapter 4, Applications of Calorimetry in a Wide Context-Differential Scanning Calorimetry, Isothermal Titration Calorimetry and Microcalorimetry. InTech—Open Access Company, pp 73–104
Zurück zum Zitat Mazaheri M, Zahedi AM, Sadrnezhaad SK (2008) Two-step sintering of nanocrystalline ZnO compacts: effect of temperature on densification and grain growth. J Am Ceram Soc 91(1):56–63 Mazaheri M, Zahedi AM, Sadrnezhaad SK (2008) Two-step sintering of nanocrystalline ZnO compacts: effect of temperature on densification and grain growth. J Am Ceram Soc 91(1):56–63
Zurück zum Zitat MicroCal L (2003) VP–ITC microcalorimeter user’s manual. Microcal, Llc pp 1–94 MicroCal L (2003) VP–ITC microcalorimeter user’s manual. Microcal, Llc pp 1–94
Zurück zum Zitat Monzó J, Koper M, Rodriguez P (2012) Removing polyvinylpyrrolidone from catalytic Pt nanoparticles without modification of superficial order. ChemPhysChem 13(3):709–715 Monzó J, Koper M, Rodriguez P (2012) Removing polyvinylpyrrolidone from catalytic Pt nanoparticles without modification of superficial order. ChemPhysChem 13(3):709–715
Zurück zum Zitat Naik RR, Brott LL, Clarson SJ et al (2002) Silica-precipitating peptides isolated from a combinatorial phage display peptide library. J Nanosci Nanotechnol 2(1):95–100 Naik RR, Brott LL, Clarson SJ et al (2002) Silica-precipitating peptides isolated from a combinatorial phage display peptide library. J Nanosci Nanotechnol 2(1):95–100
Zurück zum Zitat Oka K, Shibata H, Kashiwaya S (2002) Crystal growth of ZnO. J Cryst Growth 237–239, Part 1:509–513 Oka K, Shibata H, Kashiwaya S (2002) Crystal growth of ZnO. J Cryst Growth 237–239, Part 1:509–513
Zurück zum Zitat Oren EE, Tamerler C, Sarikaya M (2005) Metal recognition of septapeptides via polypod molecular architecture. Nano Lett 5(3):415–419 Oren EE, Tamerler C, Sarikaya M (2005) Metal recognition of septapeptides via polypod molecular architecture. Nano Lett 5(3):415–419
Zurück zum Zitat Perozzo R, Folkers G, Scapozza L (2004) Thermodynamics of protein-ligand interactions: history, presence, and future aspects. J Recept Signal Transduct 24(1–2):1–52 Perozzo R, Folkers G, Scapozza L (2004) Thermodynamics of protein-ligand interactions: history, presence, and future aspects. J Recept Signal Transduct 24(1–2):1–52
Zurück zum Zitat Perry CC, Patwardhan SV, Deschaume O (2009) From biominerals to biomaterials: the role of biomolecule-mineral interactions. Biochem Soc Trans 37:687–691 Perry CC, Patwardhan SV, Deschaume O (2009) From biominerals to biomaterials: the role of biomolecule-mineral interactions. Biochem Soc Trans 37:687–691
Zurück zum Zitat Pierce MM, Raman C, Nall BT (1999) Isothermal titration calorimetry of protein–protein interactions. Methods 19(2):213–221 Pierce MM, Raman C, Nall BT (1999) Isothermal titration calorimetry of protein–protein interactions. Methods 19(2):213–221
Zurück zum Zitat Pirzer T, Geisler M, Scheibel T et al (2009) Single molecule force measurements delineate salt, pH and surface effects on biopolymer adhesion. Phys Biol 6(2):25004 Pirzer T, Geisler M, Scheibel T et al (2009) Single molecule force measurements delineate salt, pH and surface effects on biopolymer adhesion. Phys Biol 6(2):25004
Zurück zum Zitat Pitarke JM, Silkin VM, Chulkov EV et al (2007) Theory of surface plasmons and surface-plasmon polaritons. Rep Prog Phys 70(1):1 Pitarke JM, Silkin VM, Chulkov EV et al (2007) Theory of surface plasmons and surface-plasmon polaritons. Rep Prog Phys 70(1):1
Zurück zum Zitat Poon GM (2010) Explicit formulation of titration models for isothermal titration calorimetry. Anal Biochem 400(2):229–236MathSciNet Poon GM (2010) Explicit formulation of titration models for isothermal titration calorimetry. Anal Biochem 400(2):229–236MathSciNet
Zurück zum Zitat Raj P, Johnsson M, Levine MJ et al (1992) Salivary statherin. dependence on sequence, charge, hydrogen bonding potency, and helical conformation for adsorption to hydroxyapatite and inhibition of mineralization. J Biol Chem 267(9):5968–5976 Raj P, Johnsson M, Levine MJ et al (1992) Salivary statherin. dependence on sequence, charge, hydrogen bonding potency, and helical conformation for adsorption to hydroxyapatite and inhibition of mineralization. J Biol Chem 267(9):5968–5976
Zurück zum Zitat Rautaray D, Mandal S, Sastry M (2005) Synthesis of hydroxyapatite crystals using amino acid-capped gold nanoparticles as a scaffold. Langmuir 21(11):5185–5191 Rautaray D, Mandal S, Sastry M (2005) Synthesis of hydroxyapatite crystals using amino acid-capped gold nanoparticles as a scaffold. Langmuir 21(11):5185–5191
Zurück zum Zitat Rezwan K, Studart A, Vörös J et al (2005) Change of ζ potential of biocompatible colloidal oxide particles upon adsorption of bovine serum albumin and lysozyme. J Phys Chem B 109(30):14469–14474 Rezwan K, Studart A, Vörös J et al (2005) Change of ζ potential of biocompatible colloidal oxide particles upon adsorption of bovine serum albumin and lysozyme. J Phys Chem B 109(30):14469–14474
Zurück zum Zitat Rioux R, Song H, Grass M et al (2006) Monodisperse platinum nanoparticles of well-defined shape: synthesis, characterization, catalytic properties and future prospects. Top Catal 39(3):167–174 Rioux R, Song H, Grass M et al (2006) Monodisperse platinum nanoparticles of well-defined shape: synthesis, characterization, catalytic properties and future prospects. Top Catal 39(3):167–174
Zurück zum Zitat Ruan L, Ramezani-Dakhel H, Chiu C et al (2013) Tailoring molecular specificity toward a crystal facet: a lesson from biorecognition toward Pt {111}. Nano Lett 13(2):840–846 Ruan L, Ramezani-Dakhel H, Chiu C et al (2013) Tailoring molecular specificity toward a crystal facet: a lesson from biorecognition toward Pt {111}. Nano Lett 13(2):840–846
Zurück zum Zitat Sabia R, Ukrainczyk L (2000) Surface chemistry of SiO2 and TiO2–SiO2 glasses as determined by titration of soot particles. J Non-Cryst Solids 277(1):1–9 Sabia R, Ukrainczyk L (2000) Surface chemistry of SiO2 and TiO2–SiO2 glasses as determined by titration of soot particles. J Non-Cryst Solids 277(1):1–9
Zurück zum Zitat Sanford K, Kumar M (2005) New proteins in a materials world. Curr Opin Biotechnol 16(4):416–421 Sanford K, Kumar M (2005) New proteins in a materials world. Curr Opin Biotechnol 16(4):416–421
Zurück zum Zitat Sarikaya M, Tamerler C, Jen AKY et al (2003) Molecular biomimetics: nanotechnology through biology. Nat Mater 2(9):577–585 Sarikaya M, Tamerler C, Jen AKY et al (2003) Molecular biomimetics: nanotechnology through biology. Nat Mater 2(9):577–585
Zurück zum Zitat Schmidtchen, F.P. (2012) Isothermal titration calorimetry in supramolecular chemistry. Supramolecular Chemistry: From Molecules to Nanomaterials, 67-103 Schmidtchen, F.P. (2012) Isothermal titration calorimetry in supramolecular chemistry. Supramolecular Chemistry: From Molecules to Nanomaterials, 67-103
Zurück zum Zitat Sigurskjold BW (2000) Exact analysis of competition ligand binding by displacement isothermal titration calorimetry. Anal Biochem 277(2):260–266 Sigurskjold BW (2000) Exact analysis of competition ligand binding by displacement isothermal titration calorimetry. Anal Biochem 277(2):260–266
Zurück zum Zitat Silin VV, Weetall H, Vanderah DJ (1997) SPR studies of the nonspecific adsorption kinetics of human IgG and BSA on gold surfaces modified by self-assembled monolayers (SAMs). J Colloid Interface Sci 185(1):94–103 Silin VV, Weetall H, Vanderah DJ (1997) SPR studies of the nonspecific adsorption kinetics of human IgG and BSA on gold surfaces modified by self-assembled monolayers (SAMs). J Colloid Interface Sci 185(1):94–103
Zurück zum Zitat Snyder JA, Abramyan T, Yancey JA et al (2012) Development of a tuned interfacial force field parameter set for the simulation of protein adsorption to silica glass. Biointerphases 7(1–4):51–12 (article 56) Snyder JA, Abramyan T, Yancey JA et al (2012) Development of a tuned interfacial force field parameter set for the simulation of protein adsorption to silica glass. Biointerphases 7(1–4):51–12 (article 56)
Zurück zum Zitat Song H, Kim F, Connor S et al (2005) Pt nanocrystals: shape control and Langmuir-Blodgett monolayer formation. J Phys Chem B 109(1):188–193 Song H, Kim F, Connor S et al (2005) Pt nanocrystals: shape control and Langmuir-Blodgett monolayer formation. J Phys Chem B 109(1):188–193
Zurück zum Zitat Stenberg E, Persson B, Roos H et al (1991) Quantitative determination of surface concentration of protein with surface plasmon resonance using radiolabeled proteins. J Colloid Interface Sci 143(2):513–526 Stenberg E, Persson B, Roos H et al (1991) Quantitative determination of surface concentration of protein with surface plasmon resonance using radiolabeled proteins. J Colloid Interface Sci 143(2):513–526
Zurück zum Zitat Tamerler C, Oren EE, Duman M et al (2006) Adsorption kinetics of an engineered gold binding Peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance. Langmuir 22(18):7712–7718 Tamerler C, Oren EE, Duman M et al (2006) Adsorption kinetics of an engineered gold binding Peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance. Langmuir 22(18):7712–7718
Zurück zum Zitat Taylor AD, Ladd J, Homola J et al (2008) Surface plasmon resonance (SPR) sensors for the detection of bacterial pathogens. In: Zourob M, Elwary S, Turner A (eds) Principles of bacterial detection: biosensors, recognition receptors and microsystems, Springer, New York, pp 83–108 Taylor AD, Ladd J, Homola J et al (2008) Surface plasmon resonance (SPR) sensors for the detection of bacterial pathogens. In: Zourob M, Elwary S, Turner A (eds) Principles of bacterial detection: biosensors, recognition receptors and microsystems, Springer, New York, pp 83–108
Zurück zum Zitat Thomson JA, Ladbury JE (2004) Isothermal titration calorimetry: a tutorial. Biocalorimetry 2:37–58 Thomson JA, Ladbury JE (2004) Isothermal titration calorimetry: a tutorial. Biocalorimetry 2:37–58
Zurück zum Zitat Thyparambil AA, Wei Y, Latour RA (2012) Determination of peptide-surface adsorption free energy for material surfaces not conducive to SPR or QCM using AFM. Langmuir 28(13):5687–5694 Thyparambil AA, Wei Y, Latour RA (2012) Determination of peptide-surface adsorption free energy for material surfaces not conducive to SPR or QCM using AFM. Langmuir 28(13):5687–5694
Zurück zum Zitat Togashi T, Yokoo N, Umetsu M et al (2011) Material-binding peptide application—ZnO crystal structure control by means of a ZnO-binding peptide. J Biosci Bioeng 111(2):140–145 Togashi T, Yokoo N, Umetsu M et al (2011) Material-binding peptide application—ZnO crystal structure control by means of a ZnO-binding peptide. J Biosci Bioeng 111(2):140–145
Zurück zum Zitat Tomczak M, Gupta MK, Drummy LF et al (2009) Morphological control and assembly of zinc oxide using a biotemplate. Acta Biomater 5(3):876–882 Tomczak M, Gupta MK, Drummy LF et al (2009) Morphological control and assembly of zinc oxide using a biotemplate. Acta Biomater 5(3):876–882
Zurück zum Zitat Velazquez-Campoy A, Kiso Y, Freire E (2001) The binding energetics of first-and second-generation HIV-1 protease inhibitors: implications for drug design. Arch Biochem Biophys 390(2):169–175 Velazquez-Campoy A, Kiso Y, Freire E (2001) The binding energetics of first-and second-generation HIV-1 protease inhibitors: implications for drug design. Arch Biochem Biophys 390(2):169–175
Zurück zum Zitat Vellore NA, Yancey JA, Collier G et al (2010) Assessment of the transferability of a protein force field for the simulation of peptide-surface interactions. Langmuir 26:7396–7404 Vellore NA, Yancey JA, Collier G et al (2010) Assessment of the transferability of a protein force field for the simulation of peptide-surface interactions. Langmuir 26:7396–7404
Zurück zum Zitat Vernekar VN, Latour RA (2005) Adsorption thermodynamics of a mid-chain peptide residue on functionalized SAM surfaces using SPR. Mater Res Innov 9:337–353 Vernekar VN, Latour RA (2005) Adsorption thermodynamics of a mid-chain peptide residue on functionalized SAM surfaces using SPR. Mater Res Innov 9:337–353
Zurück zum Zitat Wei Y, Latour RA (2008) Determination of the adsorption free energy for peptide-surface interactions by SPR spectroscopy. Langmuir 24(13):6721–6729 Wei Y, Latour RA (2008) Determination of the adsorption free energy for peptide-surface interactions by SPR spectroscopy. Langmuir 24(13):6721–6729
Zurück zum Zitat Wei Y, Latour RA (2009) Benchmark experimental data set and assessment of adsorption free energy for peptide-surface interactions. Langmuir 25(10):5637–5646 Wei Y, Latour RA (2009) Benchmark experimental data set and assessment of adsorption free energy for peptide-surface interactions. Langmuir 25(10):5637–5646
Zurück zum Zitat Wei Y, Latour RA (2010) Correlation between desorption force measured by atomic force microscopy and adsorption free energy measured by surface plasmon resonance spectroscopy for peptide-surface interactions. Langmuir 26(24):18852–18861 Wei Y, Latour RA (2010) Correlation between desorption force measured by atomic force microscopy and adsorption free energy measured by surface plasmon resonance spectroscopy for peptide-surface interactions. Langmuir 26(24):18852–18861
Zurück zum Zitat Wei Y, Thyparambil AA, Latour RA (2012) Peptide–surface adsorption free energy comparing solution conditions ranging from low to medium salt concentrations. ChemPhysChem 13(17):3782–3785 Wei Y, Thyparambil AA, Latour RA (2012) Peptide–surface adsorption free energy comparing solution conditions ranging from low to medium salt concentrations. ChemPhysChem 13(17):3782–3785
Zurück zum Zitat Whyburn GP, Li YJ, Huang Y (2008) Protein and protein assembly based material structures. J Mater Chem 18(32):3755–3762 Whyburn GP, Li YJ, Huang Y (2008) Protein and protein assembly based material structures. J Mater Chem 18(32):3755–3762
Zurück zum Zitat Wikiel K, Burke EM, Perich JW et al (1994) Hydroxyapatite mineralization and demineralization in the presence of synthetic phosphorylated pentapeptides. Arch Oral Biol 39(8):715–721 Wikiel K, Burke EM, Perich JW et al (1994) Hydroxyapatite mineralization and demineralization in the presence of synthetic phosphorylated pentapeptides. Arch Oral Biol 39(8):715–721
Zurück zum Zitat Willemsen OH, Snel MM, Cambi A et al (2000) Biomolecular interactions measured by atomic force microscopy. Biophys J 79(6):3267–3281 Willemsen OH, Snel MM, Cambi A et al (2000) Biomolecular interactions measured by atomic force microscopy. Biophys J 79(6):3267–3281
Zurück zum Zitat Wiseman T, Williston S, Brandts JF et al (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal Biochem 179(1):131–137 Wiseman T, Williston S, Brandts JF et al (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal Biochem 179(1):131–137
Zurück zum Zitat Wisniewski N, Moussy F, Reichert WM (2000) Characterization of implantable biosensor membrane biofouling. Fresenius’ J Anal Chem 366(6):611 Wisniewski N, Moussy F, Reichert WM (2000) Characterization of implantable biosensor membrane biofouling. Fresenius’ J Anal Chem 366(6):611
Zurück zum Zitat Wu H, Zhang CH, Liang YP et al (2013) Catechol modification and covalent immobilization of catalase on titania submicrospheres. J Mol Catal B-Enzym 92:44–50 Wu H, Zhang CH, Liang YP et al (2013) Catechol modification and covalent immobilization of catalase on titania submicrospheres. J Mol Catal B-Enzym 92:44–50
Zurück zum Zitat You CC, Agasti SS, Rotello VM (2008) Isomeric control of protein recognition with amino acid- and dipeptide-functionalized gold nanoparticles. Chem Eur J 14(1):143–150 You CC, Agasti SS, Rotello VM (2008) Isomeric control of protein recognition with amino acid- and dipeptide-functionalized gold nanoparticles. Chem Eur J 14(1):143–150
Zurück zum Zitat You C, De M, Han G, Rotello VM (2005a) Tunable inhibition and denaturation of α-chymotrypsin with amino acid-functionalized gold nanoparticles. J Am Chem Soc 127(37):12873–12881 You C, De M, Han G, Rotello VM (2005a) Tunable inhibition and denaturation of α-chymotrypsin with amino acid-functionalized gold nanoparticles. J Am Chem Soc 127(37):12873–12881
Zurück zum Zitat You C, De M, Rotello VM (2005b) Contrasting effects of exterior and interior hydrophobicmoieties in the complexation of amino acid functionalized gold clusters with α-chymotrypsin. Org Lett 7(25):5685–5688 You C, De M, Rotello VM (2005b) Contrasting effects of exterior and interior hydrophobicmoieties in the complexation of amino acid functionalized gold clusters with α-chymotrypsin. Org Lett 7(25):5685–5688
Zurück zum Zitat Zhang Z, Menges B, Timmons RB et al (2003) Surface plasmon resonance studies of protein binding on plasma polymerized di(ethylene glycol) monovinyl ether films. Langmuir 19(11):4765–4770 Zhang Z, Menges B, Timmons RB et al (2003) Surface plasmon resonance studies of protein binding on plasma polymerized di(ethylene glycol) monovinyl ether films. Langmuir 19(11):4765–4770
Metadaten
Titel
Experimental Characterization of Peptide–Surface Interactions
verfasst von
Marion J. Limo
Carole C. Perry
A. A. Thyparambil
Yang Wei
Robert A. Latour
Copyright-Jahr
2014
Verlag
Springer New York
DOI
https://doi.org/10.1007/978-1-4614-9446-1_3

Neuer Inhalt