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Erschienen in: Population Ecology 1/2015

01.01.2015 | Special Feature: Review

High-throughput DNA barcoding for ecological network studies

verfasst von: Hirokazu Toju

Erschienen in: Population Ecology | Ausgabe 1/2015

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Abstract

The network theoretical framework of ecological community studies is expected to promote not only the basic understanding of ecological and coevolutionary dynamics but also the application of those scientific insights into ecosystem management. However, our knowledge of ecological network architecture in the wild largely stems from empirical studies on macro-organismal systems such as those of plant–pollinator, plant–seed disperser, and prey–predator interactions. In this sense, we have remained ignorant of the diversity of ecological network architecture, its underlying assembly processes, and its consequences on ecological and coevolutionary dynamics. In this paper, I discuss how the high-throughput DNA barcoding of microbes, especially that based on next-generation sequencing, potentially expands the target of ecological network studies. I review the methodological platforms of next-generation sequencing-based analyses of microbe–host animal/plant networks and then introduce some case studies on the networks of plants and their hyper-diverse fungal symbionts. As those preliminary studies are uncovering the unexpected diversity of ecological network architecture, further application of such next-generation sequencing-based analyses to a diverse array of microbial systems will significantly improve our views on community ecological and coevolutionary processes.

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Literatur
Zurück zum Zitat Abarenkov K, Nilsson RH, Larsson KH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T, Sen R, Taylor AFS, Tedersoo L, Ursing BM, Vralstad T, Liimatainen K, Peintner U, Koljalg U (2010) The UNITE database for molecular identification of fungi: recent updates and future perspectives. New Phytol 186:281–285PubMed Abarenkov K, Nilsson RH, Larsson KH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T, Sen R, Taylor AFS, Tedersoo L, Ursing BM, Vralstad T, Liimatainen K, Peintner U, Koljalg U (2010) The UNITE database for molecular identification of fungi: recent updates and future perspectives. New Phytol 186:281–285PubMed
Zurück zum Zitat Allen MF (1991) The ecology of mycorrhizae. Cambridge University Press, Cambridge Allen MF (1991) The ecology of mycorrhizae. Cambridge University Press, Cambridge
Zurück zum Zitat Allesina S, Tang S (2012) Stability criteria for complex ecosystems. Nature 483:205–208PubMed Allesina S, Tang S (2012) Stability criteria for complex ecosystems. Nature 483:205–208PubMed
Zurück zum Zitat Almeida-Neto M, Ulrich W (2011) A straightforward computational approach for measuring nestedness using quantitative matrices. Env Model Softw 26:173–178 Almeida-Neto M, Ulrich W (2011) A straightforward computational approach for measuring nestedness using quantitative matrices. Env Model Softw 26:173–178
Zurück zum Zitat Almeida-Neto M, Guimarães PR Jr, Lewinsohn TM (2007) On nestedness analyses: rethinking matrix temperature and anti-nestedness. Oikos 116:716–722 Almeida-Neto M, Guimarães PR Jr, Lewinsohn TM (2007) On nestedness analyses: rethinking matrix temperature and anti-nestedness. Oikos 116:716–722
Zurück zum Zitat Almeida-Neto M, Guimarães P, Guimarães PR Jr, Loyola RD, Ulrich W (2008) A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos 117:1227–1239 Almeida-Neto M, Guimarães P, Guimarães PR Jr, Loyola RD, Ulrich W (2008) A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos 117:1227–1239
Zurück zum Zitat Bahram M, Harend H, Tedersoo L (2013) Network perspectives of ectomycorrhizal associations. Fungal Ecol 7:70–77 Bahram M, Harend H, Tedersoo L (2013) Network perspectives of ectomycorrhizal associations. Fungal Ecol 7:70–77
Zurück zum Zitat Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376PubMedCentralPubMed Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376PubMedCentralPubMed
Zurück zum Zitat Ball SL, Armstrong KF (2008) Rapid, one-step DNA extraction for insect pest identification by using DNA barcodes. J Econom Entomol 101:523–532 Ball SL, Armstrong KF (2008) Rapid, one-step DNA extraction for insect pest identification by using DNA barcodes. J Econom Entomol 101:523–532
Zurück zum Zitat Barber MJ (2007) Modularity and community detection in bipartite networks. Phys Rev E 76:066102 Barber MJ (2007) Modularity and community detection in bipartite networks. Phys Rev E 76:066102
Zurück zum Zitat Bascompte J, Jordano P (2014) Mutualistic networks. Princeton University Press, Princeton Bascompte J, Jordano P (2014) Mutualistic networks. Princeton University Press, Princeton
Zurück zum Zitat Bascompte J, Jordano P, Melián CJ, Olesen JM (2003) The nested assembly of plant-animal mutualistic networks. Proc Natl Acad Sci USA 100:9383–9387PubMedCentralPubMed Bascompte J, Jordano P, Melián CJ, Olesen JM (2003) The nested assembly of plant-animal mutualistic networks. Proc Natl Acad Sci USA 100:9383–9387PubMedCentralPubMed
Zurück zum Zitat Bastolla U, Fortuna MA, Pascual-Garía A, Ferrera A, Luque B, Bascompte J (2009) The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature 458:1018–1020PubMed Bastolla U, Fortuna MA, Pascual-Garía A, Ferrera A, Luque B, Bascompte J (2009) The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature 458:1018–1020PubMed
Zurück zum Zitat Beiler KJ, Durall DM, Simard SW, Maxwell SA, Kretzer AM (2009) Architecture of the wood-wide web: Rhizopogon spp. genets link multiple Douglas-fir cohorts. New Phytol 185:543–553PubMed Beiler KJ, Durall DM, Simard SW, Maxwell SA, Kretzer AM (2009) Architecture of the wood-wide web: Rhizopogon spp. genets link multiple Douglas-fir cohorts. New Phytol 185:543–553PubMed
Zurück zum Zitat Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P, Kauserud H (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol 10:189PubMedCentralPubMed Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P, Kauserud H (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol 10:189PubMedCentralPubMed
Zurück zum Zitat Bever JD (2003) Soil community feedback and the coexistence of competitors: conceptual frameworks and empirical tests. New Phytol 157:465–473 Bever JD (2003) Soil community feedback and the coexistence of competitors: conceptual frameworks and empirical tests. New Phytol 157:465–473
Zurück zum Zitat Blüthgen N, Menzel F, Hovestadt T, Fiala B (2007) Specialization, constraints, and conflicting interests in mutualistic networks. Curr Biol 17:341–346PubMed Blüthgen N, Menzel F, Hovestadt T, Fiala B (2007) Specialization, constraints, and conflicting interests in mutualistic networks. Curr Biol 17:341–346PubMed
Zurück zum Zitat Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M (2014) Environmental DNA for wildlife biology and biodiversity monitoring. Trends Ecol Evol 29:358–367PubMed Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M (2014) Environmental DNA for wildlife biology and biodiversity monitoring. Trends Ecol Evol 29:358–367PubMed
Zurück zum Zitat Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336PubMedCentralPubMed Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336PubMedCentralPubMed
Zurück zum Zitat Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6:1621–1624PubMedCentralPubMed Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6:1621–1624PubMedCentralPubMed
Zurück zum Zitat Caruso T, Rillig MC, Garlaschelli D (2012) On the application of network theory to arbuscular mycorrhizal fungi–plant interactions: the importance of basic assumptions. New Phytol 194:891–894PubMed Caruso T, Rillig MC, Garlaschelli D (2012) On the application of network theory to arbuscular mycorrhizal fungi–plant interactions: the importance of basic assumptions. New Phytol 194:891–894PubMed
Zurück zum Zitat CBOL Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci USA 106:12794–12797PubMedCentral CBOL Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci USA 106:12794–12797PubMedCentral
Zurück zum Zitat Chen S, Yao H, Han J, Liu C, Song J, Shi L, Zhu Y, Ma X, Gao T, Pang X (2010) Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 5:e8613PubMedCentralPubMed Chen S, Yao H, Han J, Liu C, Song J, Shi L, Zhu Y, Ma X, Gao T, Pang X (2010) Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 5:e8613PubMedCentralPubMed
Zurück zum Zitat China Plant BOL Group (2011) Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci USA 108:19641–19646PubMedCentral China Plant BOL Group (2011) Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci USA 108:19641–19646PubMedCentral
Zurück zum Zitat Clauset A, Moore C, Newman ME (2008) Hierarchical structure and the prediction of missing links in networks. Nature 453:98–101PubMed Clauset A, Moore C, Newman ME (2008) Hierarchical structure and the prediction of missing links in networks. Nature 453:98–101PubMed
Zurück zum Zitat Coleman AW (2003) ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends Genetics 19:370–375 Coleman AW (2003) ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends Genetics 19:370–375
Zurück zum Zitat Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA (2012) The application of ecological theory toward an understanding of the human microbiome. Science 336:1255–1262PubMedCentralPubMed Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA (2012) The application of ecological theory toward an understanding of the human microbiome. Science 336:1255–1262PubMedCentralPubMed
Zurück zum Zitat Darwin C (1862) On the various contrivances by which British and foreign orchids are fertilized by insects. Murray, London Darwin C (1862) On the various contrivances by which British and foreign orchids are fertilized by insects. Murray, London
Zurück zum Zitat de Cárcer DA, Denman SE, McSweeney C, Morrison M (2011) Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes. Appl Env Microbiol 77:8795–8798 de Cárcer DA, Denman SE, McSweeney C, Morrison M (2011) Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes. Appl Env Microbiol 77:8795–8798
Zurück zum Zitat Donatti CI, Guimarães PR Jr, Galetti M, Pizo MA, Marquitti F, Dirzo R (2011) Analysis of a hyper-diverse seed dispersal network: modularity and underlying mechanisms. Ecol Lett 14:773–781PubMed Donatti CI, Guimarães PR Jr, Galetti M, Pizo MA, Marquitti F, Dirzo R (2011) Analysis of a hyper-diverse seed dispersal network: modularity and underlying mechanisms. Ecol Lett 14:773–781PubMed
Zurück zum Zitat Dormann CF, Fründ J, Blüthgen N, Gruber B (2009) Indices, graphs and null models: analyzing bipartite ecological networks. Open Ecol J 2:7–24 Dormann CF, Fründ J, Blüthgen N, Gruber B (2009) Indices, graphs and null models: analyzing bipartite ecological networks. Open Ecol J 2:7–24
Zurück zum Zitat Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, Servetas SL, Mateczun AJ, Mokashi VP, Bishop-Lilly KA (2014) Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood. BMC Genom 15:96 Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, Servetas SL, Mateczun AJ, Mokashi VP, Bishop-Lilly KA (2014) Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood. BMC Genom 15:96
Zurück zum Zitat Fukami T, Nakajima M (2013) Complex plant–soil interactions enhance plant species diversity by delaying community convergence. J Ecol 101:316–324 Fukami T, Nakajima M (2013) Complex plant–soil interactions enhance plant species diversity by delaying community convergence. J Ecol 101:316–324
Zurück zum Zitat Fukatsu T, Tsuchida T, Nikoh N, Koga R (2001) Spiroplasma symbiont of the pea aphid, Acyrthosiphon pisum (Insecta: Homoptera). Appl Env Microbiol 67:1284–1291 Fukatsu T, Tsuchida T, Nikoh N, Koga R (2001) Spiroplasma symbiont of the pea aphid, Acyrthosiphon pisum (Insecta: Homoptera). Appl Env Microbiol 67:1284–1291
Zurück zum Zitat Guimarães PR Jr, Jordano P, Thompson JN (2011) Evolution and coevolution in mutualistic networks. Ecol Lett 14:877–885PubMed Guimarães PR Jr, Jordano P, Thompson JN (2011) Evolution and coevolution in mutualistic networks. Ecol Lett 14:877–885PubMed
Zurück zum Zitat Guimerà R, Amaral LAN (2005) Cartography of complex networks: modules and universal roles. J Stat Mech Theor Exper 2005:P02001 Guimerà R, Amaral LAN (2005) Cartography of complex networks: modules and universal roles. J Stat Mech Theor Exper 2005:P02001
Zurück zum Zitat Hajibabaei M, Singer GA, Hebert PD, Hickey DA (2007) DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends Genetics 23:167–172 Hajibabaei M, Singer GA, Hebert PD, Hickey DA (2007) DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends Genetics 23:167–172
Zurück zum Zitat Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5:235–237PubMedCentralPubMed Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5:235–237PubMedCentralPubMed
Zurück zum Zitat Handelsman J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68:669–685PubMedCentralPubMed Handelsman J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68:669–685PubMedCentralPubMed
Zurück zum Zitat Hebert PD, Cywinska A, Ball SL, de Waard JR (2003a) Biological identifications through DNA barcodes. Proc R Soc B Lond 270:313–321 Hebert PD, Cywinska A, Ball SL, de Waard JR (2003a) Biological identifications through DNA barcodes. Proc R Soc B Lond 270:313–321
Zurück zum Zitat Hebert PD, Ratnasingham S, de Waard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc B Lond 270:S96–S99 Hebert PD, Ratnasingham S, de Waard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc B Lond 270:S96–S99
Zurück zum Zitat Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101:14812–14817PubMedCentralPubMed Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101:14812–14817PubMedCentralPubMed
Zurück zum Zitat Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, Nilsson RH (2011) Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences. Fungal Biol Rev 25:38–47 Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, Nilsson RH (2011) Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences. Fungal Biol Rev 25:38–47
Zurück zum Zitat Hongoh Y, Ekpornprasit L, Inoue T, Moriya S, Trakulnaleamsai S, Ohkuma M, Noparatnaraporn N, Kudo T (2006) Intracolony variation of bacterial gut microbiota among castes and ages in the fungus-growing termite Macrotermes gilvus. Mol Ecol 15:505–516PubMed Hongoh Y, Ekpornprasit L, Inoue T, Moriya S, Trakulnaleamsai S, Ohkuma M, Noparatnaraporn N, Kudo T (2006) Intracolony variation of bacterial gut microbiota among castes and ages in the fungus-growing termite Macrotermes gilvus. Mol Ecol 15:505–516PubMed
Zurück zum Zitat Human Microbiome Project Consortium (2012a) A framework for human microbiome research. Nature 486:215–221 Human Microbiome Project Consortium (2012a) A framework for human microbiome research. Nature 486:215–221
Zurück zum Zitat Human Microbiome Project Consortium (2012b) Structure, function and diversity of the healthy human microbiome. Nature 486:207–214 Human Microbiome Project Consortium (2012b) Structure, function and diversity of the healthy human microbiome. Nature 486:207–214
Zurück zum Zitat Hutchinson GE (1961) The paradox of the plankton. Am Nat 95:137–145 Hutchinson GE (1961) The paradox of the plankton. Am Nat 95:137–145
Zurück zum Zitat Joly S, Davies TJ, Archambault A, Bruneau A, Derry A, Kembel SW, Peres-Neto P, Vamosi J, Wheeler TA (2014) Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead. Mol Ecol Res 14:221–232 Joly S, Davies TJ, Archambault A, Bruneau A, Derry A, Kembel SW, Peres-Neto P, Vamosi J, Wheeler TA (2014) Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead. Mol Ecol Res 14:221–232
Zurück zum Zitat Kadowaki K, Sato H, Yamamoto S, Tanabe AS, Hidaka A, Toju H (2014) Detection of the horizontal spatial structure of soil fungal communities in a natural forest. Popul Ecol 56:301–310 Kadowaki K, Sato H, Yamamoto S, Tanabe AS, Hidaka A, Toju H (2014) Detection of the horizontal spatial structure of soil fungal communities in a natural forest. Popul Ecol 56:301–310
Zurück zum Zitat Kato M, Kakutani T, Inoue T, Itino T (1990) Insect–flower relationship in the primary beech forest of Ashu, Kyoto: an overview of the flowering phenology and the seasonal pattern of insect visits. Contr Biol Lab Kyoto Univ 27:309–376 Kato M, Kakutani T, Inoue T, Itino T (1990) Insect–flower relationship in the primary beech forest of Ashu, Kyoto: an overview of the flowering phenology and the seasonal pattern of insect visits. Contr Biol Lab Kyoto Univ 27:309–376
Zurück zum Zitat Kiers ET, Denison RF (2008) Sanctions, cooperation, and the stability of plant-rhizosphere mutualisms. Ann Rev Ecol Evol Syst 39:215–236 Kiers ET, Denison RF (2008) Sanctions, cooperation, and the stability of plant-rhizosphere mutualisms. Ann Rev Ecol Evol Syst 39:215–236
Zurück zum Zitat Kiers ET, Rousseau RA, West SA, Denison RF (2003) Host sanctions and the legume-rhizobium mutualism. Nature 425:78–81PubMed Kiers ET, Rousseau RA, West SA, Denison RF (2003) Host sanctions and the legume-rhizobium mutualism. Nature 425:78–81PubMed
Zurück zum Zitat Kiers ET, Duhamel M, Beesetty Y, Mensah JA, Franken O, Verbruggen E, Fellbaum CR, Kowalchuk GA, Hart MM, Bago A, Palmaer MT, West SA, Vandenkoornhuyse P, Jansa J, Bücking H (2011) Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis. Science 333:880–882PubMed Kiers ET, Duhamel M, Beesetty Y, Mensah JA, Franken O, Verbruggen E, Fellbaum CR, Kowalchuk GA, Hart MM, Bago A, Palmaer MT, West SA, Vandenkoornhuyse P, Jansa J, Bücking H (2011) Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis. Science 333:880–882PubMed
Zurück zum Zitat Kikuchi Y (2008) Endosymbiotic bacteria in insects: their diversity and culturability. Microb Env 24:195–204 Kikuchi Y (2008) Endosymbiotic bacteria in insects: their diversity and culturability. Microb Env 24:195–204
Zurück zum Zitat Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41:e1PubMedCentralPubMed Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41:e1PubMedCentralPubMed
Zurück zum Zitat Klironomos JN (2002) Feedback with soil biota contributes to plant rarity and invasiveness in communities. Nature 417:67–70PubMed Klironomos JN (2002) Feedback with soil biota contributes to plant rarity and invasiveness in communities. Nature 417:67–70PubMed
Zurück zum Zitat Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 102:8369–8374PubMedCentralPubMed Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 102:8369–8374PubMedCentralPubMed
Zurück zum Zitat Lian C, Narimatsu M, Nara K, Hogetsu T (2006) Tricholoma matsutake in a natural Pinus densiflora forest: correspondence between above- and below-ground genets, association with multiple host trees and alteration of existing ectomycorrhizal communities. New Phytol 171:825–836PubMed Lian C, Narimatsu M, Nara K, Hogetsu T (2006) Tricholoma matsutake in a natural Pinus densiflora forest: correspondence between above- and below-ground genets, association with multiple host trees and alteration of existing ectomycorrhizal communities. New Phytol 171:825–836PubMed
Zurück zum Zitat Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjøller R, Kõljalg U, Pennanen T, Rosendahl S, Stenlid J (2013) Fungal community analysis by high-throughput sequencing of amplified markers: a user’s guide. New Phytol 199:288–299PubMedCentralPubMed Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjøller R, Kõljalg U, Pennanen T, Rosendahl S, Stenlid J (2013) Fungal community analysis by high-throughput sequencing of amplified markers: a user’s guide. New Phytol 199:288–299PubMedCentralPubMed
Zurück zum Zitat Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (2012) Comparison of next-generation sequencing systems. J Biomed Biotech 201:251364. doi:10.1155/2012/251364 Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (2012) Comparison of next-generation sequencing systems. J Biomed Biotech 201:251364. doi:10.​1155/​2012/​251364
Zurück zum Zitat Mangan SA, Schnitzer SA, Herre EA, Mack KML, Valencia MC, Sanchez EI, Bever JD (2010) Negative plant–soil feedback predicts tree–species relative abundance in a tropical forest. Nature 466:752–755PubMed Mangan SA, Schnitzer SA, Herre EA, Mack KML, Valencia MC, Sanchez EI, Bever JD (2010) Negative plant–soil feedback predicts tree–species relative abundance in a tropical forest. Nature 466:752–755PubMed
Zurück zum Zitat Mardis ER (2013) Next-generation sequencing platforms. Ann Rev Analyt Chem 6:287–303 Mardis ER (2013) Next-generation sequencing platforms. Ann Rev Analyt Chem 6:287–303
Zurück zum Zitat Marquitti FMD, Guimarães PR Jr, Pires MM, Bittencourt LF (2013) MODULAR: Software for the autonomous computation of modularity in large network sets. Ecography 37:221–224 Marquitti FMD, Guimarães PR Jr, Pires MM, Bittencourt LF (2013) MODULAR: Software for the autonomous computation of modularity in large network sets. Ecography 37:221–224
Zurück zum Zitat May RM (1972) Will a large complex system be stable? Nature 238:413–414PubMed May RM (1972) Will a large complex system be stable? Nature 238:413–414PubMed
Zurück zum Zitat May RM (2006) Network structure and the biology of populations. Trends Ecol Evol 21:394–399PubMed May RM (2006) Network structure and the biology of populations. Trends Ecol Evol 21:394–399PubMed
Zurück zum Zitat Minamoto T, Yamanaka H, Takahara T, Honjo MN, Kawabata ZI (2012) Surveillance of fish species composition using environmental DNA. Limnology 13:193–197 Minamoto T, Yamanaka H, Takahara T, Honjo MN, Kawabata ZI (2012) Surveillance of fish species composition using environmental DNA. Limnology 13:193–197
Zurück zum Zitat Montesinos-Navarro A, Segarra-Moragues JG, Valiente-Banuet A, Verdú M (2012) The network structure of plant-arbuscular mycorrhizal fungi. New Phytol 194:536–547PubMed Montesinos-Navarro A, Segarra-Moragues JG, Valiente-Banuet A, Verdú M (2012) The network structure of plant-arbuscular mycorrhizal fungi. New Phytol 194:536–547PubMed
Zurück zum Zitat Moran NA (2007) Symbiosis as an adaptive process and source of phenotypic complexity. Proc Natl Acad Sci USA 104:8627–8633PubMedCentralPubMed Moran NA (2007) Symbiosis as an adaptive process and source of phenotypic complexity. Proc Natl Acad Sci USA 104:8627–8633PubMedCentralPubMed
Zurück zum Zitat Mougi A, Kondoh M (2012) Diversity of interaction types and ecological community stability. Science 337:349–351PubMed Mougi A, Kondoh M (2012) Diversity of interaction types and ecological community stability. Science 337:349–351PubMed
Zurück zum Zitat Newman ME, Girvan M (2004) Finding and evaluating community structure in networks. Phys Rev E 69:026113 Newman ME, Girvan M (2004) Finding and evaluating community structure in networks. Phys Rev E 69:026113
Zurück zum Zitat Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH (2008) Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinfo 4:193–201 Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH (2008) Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinfo 4:193–201
Zurück zum Zitat Nilsson HR, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T (2011) Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytol 191:314–318 Nilsson HR, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T (2011) Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytol 191:314–318
Zurück zum Zitat Olesen JM, Bascompte J, Dupont YL, Jordano P (2007) The modularity of pollination networks. Proc Natl Acad Sci USA 104:19891–19896PubMedCentralPubMed Olesen JM, Bascompte J, Dupont YL, Jordano P (2007) The modularity of pollination networks. Proc Natl Acad Sci USA 104:19891–19896PubMedCentralPubMed
Zurück zum Zitat Olsen GJ, Lane DJ, Giovannoni SJ, Pace NR, Stahl DA (1986) Microbial ecology and evolution: a ribosomal RNA approach. Ann Rev Microbiol 40:337–365 Olsen GJ, Lane DJ, Giovannoni SJ, Pace NR, Stahl DA (1986) Microbial ecology and evolution: a ribosomal RNA approach. Ann Rev Microbiol 40:337–365
Zurück zum Zitat Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M (2012) CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol 10:e1001419PubMedCentralPubMed Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M (2012) CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol 10:e1001419PubMedCentralPubMed
Zurück zum Zitat Peay KG, Kennedy PG, Bruns TD (2008) Fungal community ecology: a hybrid beast with a molecular master. Bioscience 58:799–810 Peay KG, Kennedy PG, Bruns TD (2008) Fungal community ecology: a hybrid beast with a molecular master. Bioscience 58:799–810
Zurück zum Zitat Pimm SL (1991) The balance of nature? Ecological issues in the conservation of species and communities. University of Chicago Press, Chicago Pimm SL (1991) The balance of nature? Ecological issues in the conservation of species and communities. University of Chicago Press, Chicago
Zurück zum Zitat Poisot T, Péquin B, Gravel D (2013) High-throughput sequencing: a roadmap toward community ecology. Ecol Evol 3:1125–1139PubMedCentralPubMed Poisot T, Péquin B, Gravel D (2013) High-throughput sequencing: a roadmap toward community ecology. Ecol Evol 3:1125–1139PubMedCentralPubMed
Zurück zum Zitat Polis GA, Myers CA, Holt RD (1989) The ecology and evolution of intraguild predation: potential competitors that eat each other. Ann Rev Ecol Syst 20:297–330 Polis GA, Myers CA, Holt RD (1989) The ecology and evolution of intraguild predation: potential competitors that eat each other. Ann Rev Ecol Syst 20:297–330
Zurück zum Zitat Pompanon F, Deagle BE, Symondson WO, Brown DS, Jarman SN, Taberlet P (2012) Who is eating what: diet assessment using next generation sequencing. Mol Ecol 21:1931–1950PubMed Pompanon F, Deagle BE, Symondson WO, Brown DS, Jarman SN, Taberlet P (2012) Who is eating what: diet assessment using next generation sequencing. Mol Ecol 21:1931–1950PubMed
Zurück zum Zitat Prosser JI, Bohannan BJ, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ (2007) The role of ecological theory in microbial ecology. Nat Rev Microbiol 5:384–392PubMed Prosser JI, Bohannan BJ, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ (2007) The role of ecological theory in microbial ecology. Nat Rev Microbiol 5:384–392PubMed
Zurück zum Zitat Randall JE (1967) Food habits of reef fishes of the West Indies. Stud Trop Oceanogr 5:665–847 Randall JE (1967) Food habits of reef fishes of the West Indies. Stud Trop Oceanogr 5:665–847
Zurück zum Zitat Rappé MS, Giovannoni SJ (2003) The uncultured microbial majority. Ann Rev Microbiol 57:369–394 Rappé MS, Giovannoni SJ (2003) The uncultured microbial majority. Ann Rev Microbiol 57:369–394
Zurück zum Zitat Rezende EL, Lavabre JE, Guimarães PR Jr, Jordano P, Bascompte J (2007) Non-random coextinctions in phylogenetically structured mutualistic networks. Nature 448:925–928PubMed Rezende EL, Lavabre JE, Guimarães PR Jr, Jordano P, Bascompte J (2007) Non-random coextinctions in phylogenetically structured mutualistic networks. Nature 448:925–928PubMed
Zurück zum Zitat Robertson C (1928) Flowers and insects lists of visitors of four hundred and fifty three flowers. The Science Press, Lancaster Robertson C (1928) Flowers and insects lists of visitors of four hundred and fifty three flowers. The Science Press, Lancaster
Zurück zum Zitat Schleuning M, Ingmann L, Strauß R, Fritz SA, Dalsgaard B, Matthias Dehling D, Plein M, Saavedra F, Sandel B, Svenning JC (2014) Ecological, historical and evolutionary determinants of modularity in weighted seed-dispersal networks. Ecol Lett 17:454–463PubMed Schleuning M, Ingmann L, Strauß R, Fritz SA, Dalsgaard B, Matthias Dehling D, Plein M, Saavedra F, Sandel B, Svenning JC (2014) Ecological, historical and evolutionary determinants of modularity in weighted seed-dispersal networks. Ecol Lett 17:454–463PubMed
Zurück zum Zitat Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Env Microbiol 75:7537–7541 Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Env Microbiol 75:7537–7541
Zurück zum Zitat Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109:6241–6246PubMedCentralPubMed Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109:6241–6246PubMedCentralPubMed
Zurück zum Zitat Seifert KA (2009) Progress towards DNA barcoding of fungi. Mol Ecol Res 9:83–89 Seifert KA (2009) Progress towards DNA barcoding of fungi. Mol Ecol Res 9:83–89
Zurück zum Zitat Smith SE, Read DJ (2008) Mycorrhizal symbiosis, 3rd edn. Elsevier, New York Smith SE, Read DJ (2008) Mycorrhizal symbiosis, 3rd edn. Elsevier, New York
Zurück zum Zitat Sommer DD, Delcher AL, Salzberg SL, Pop M (2007) Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8:64PubMedCentralPubMed Sommer DD, Delcher AL, Salzberg SL, Pop M (2007) Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8:64PubMedCentralPubMed
Zurück zum Zitat Staniczenko PP, Kopp JC, Allesina S (2013) The ghost of nestedness in ecological networks. Nat Commun 4:1391PubMed Staniczenko PP, Kopp JC, Allesina S (2013) The ghost of nestedness in ecological networks. Nat Commun 4:1391PubMed
Zurück zum Zitat Sullivan DJ, Völkl W (1999) Hyperparasitism: multitrophic ecology and behavior. Ann Rev Entomol 44:291–315 Sullivan DJ, Völkl W (1999) Hyperparasitism: multitrophic ecology and behavior. Ann Rev Entomol 44:291–315
Zurück zum Zitat Suweis S, Simini F, Banavar JR, Maritan A (2013) Emergence of structural and dynamical properties of ecological mutualistic networks. Nature 500:449–452PubMed Suweis S, Simini F, Banavar JR, Maritan A (2013) Emergence of structural and dynamical properties of ecological mutualistic networks. Nature 500:449–452PubMed
Zurück zum Zitat Tanabe AS, Toju H (2013) Two new computational methods for universal DNA barcoding: A benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants. PLoS One 8:e76910PubMedCentralPubMed Tanabe AS, Toju H (2013) Two new computational methods for universal DNA barcoding: A benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants. PLoS One 8:e76910PubMedCentralPubMed
Zurück zum Zitat Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, Kõljalg U (2010) 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 188:291–301PubMed Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, Kõljalg U (2010) 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 188:291–301PubMed
Zurück zum Zitat Thébault E, Fontaine C (2010) Stability of ecological communities and the architecture of mutualistic and trophic networks. Science 329:853–856PubMed Thébault E, Fontaine C (2010) Stability of ecological communities and the architecture of mutualistic and trophic networks. Science 329:853–856PubMed
Zurück zum Zitat Thompson JN (2005) The geographic mosaic of coevolution. The University of Chicago Press, Chicago Thompson JN (2005) The geographic mosaic of coevolution. The University of Chicago Press, Chicago
Zurück zum Zitat Thompson JN (2006) Mutualistic webs of species. Science 312:372–373PubMed Thompson JN (2006) Mutualistic webs of species. Science 312:372–373PubMed
Zurück zum Zitat Toju H, Fukatsu T (2011) Diversity and infection prevalence of endosymbionts in natural populations of the chestnut weevil: relevance of local climate and host plants. Mol Ecol 20:853–868PubMed Toju H, Fukatsu T (2011) Diversity and infection prevalence of endosymbionts in natural populations of the chestnut weevil: relevance of local climate and host plants. Mol Ecol 20:853–868PubMed
Zurück zum Zitat Toju H, Tanabe AS, Yamamoto S, Sato H (2012) High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS One 7:e40863PubMedCentralPubMed Toju H, Tanabe AS, Yamamoto S, Sato H (2012) High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS One 7:e40863PubMedCentralPubMed
Zurück zum Zitat Toju H, Yamamoto S, Sato H, Tanabe AS, Gilbert GS, Kadowaki K (2013a) Community composition of root-associated fungi in a Quercus-dominated temperate forest: “codominance” of mycorrhizal and root-endophytic fungi. Ecol Evol 3:1281–1293PubMedCentralPubMed Toju H, Yamamoto S, Sato H, Tanabe AS, Gilbert GS, Kadowaki K (2013a) Community composition of root-associated fungi in a Quercus-dominated temperate forest: “codominance” of mycorrhizal and root-endophytic fungi. Ecol Evol 3:1281–1293PubMedCentralPubMed
Zurück zum Zitat Toju H, Sato H, Yamamoto S, Kadowaki K, Tanabe AS, Yazawa S, Nishimura O, Agata K (2013b) How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants. Ecol Evol 3:3112–3124PubMedCentralPubMed Toju H, Sato H, Yamamoto S, Kadowaki K, Tanabe AS, Yazawa S, Nishimura O, Agata K (2013b) How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants. Ecol Evol 3:3112–3124PubMedCentralPubMed
Zurück zum Zitat Toju H, Yamamoto S, Sato H, Tanabe AS (2013c) Sharing of diverse mycorrhizal and root-endophytic fungi among plant species in an oak-dominated cool–temperate forest. PLoS ONE 8:e78248PubMedCentralPubMed Toju H, Yamamoto S, Sato H, Tanabe AS (2013c) Sharing of diverse mycorrhizal and root-endophytic fungi among plant species in an oak-dominated cool–temperate forest. PLoS ONE 8:e78248PubMedCentralPubMed
Zurück zum Zitat Toju H, Sato H, Tanabe AS (2014a) Diversity and spatial structure of belowground plant–fungal symbiosis in a mixed subtropical forest of ectomycorrhizal and arbuscular mycorrhizal plants. PLoS One 9:e86566PubMedCentralPubMed Toju H, Sato H, Tanabe AS (2014a) Diversity and spatial structure of belowground plant–fungal symbiosis in a mixed subtropical forest of ectomycorrhizal and arbuscular mycorrhizal plants. PLoS One 9:e86566PubMedCentralPubMed
Zurück zum Zitat Toju H, Guimarães PR Jr, Olesen JM, Thompson JN (2014b) Assembly of complex plant–fungus networks. Nature Commun 5:5273 Toju H, Guimarães PR Jr, Olesen JM, Thompson JN (2014b) Assembly of complex plant–fungus networks. Nature Commun 5:5273
Zurück zum Zitat Tringe SG, Von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC (2005) Comparative metagenomics of microbial communities. Science 308:554–557PubMed Tringe SG, Von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC (2005) Comparative metagenomics of microbial communities. Science 308:554–557PubMed
Zurück zum Zitat Tylianakis JM, Tscharntke T, Lewis OT (2007) Habitat modification alters the structure of tropical host-parasitoid food webs. Nature 445:202–205PubMed Tylianakis JM, Tscharntke T, Lewis OT (2007) Habitat modification alters the structure of tropical host-parasitoid food webs. Nature 445:202–205PubMed
Zurück zum Zitat Tylianakis JM, Didham RK, Bascompte J, Wardle DA (2008) Global change and species interactions in terrestrial ecosystems. Ecol Lett 11:1351–1363PubMed Tylianakis JM, Didham RK, Bascompte J, Wardle DA (2008) Global change and species interactions in terrestrial ecosystems. Ecol Lett 11:1351–1363PubMed
Zurück zum Zitat Tylianakis JM, Lalibert E, Nielsen A, Bascompte J (2009) Conservation of species interaction networks. Biol Cons 143:2270–2279 Tylianakis JM, Lalibert E, Nielsen A, Bascompte J (2009) Conservation of species interaction networks. Biol Cons 143:2270–2279
Zurück zum Zitat Valentini A, Pompanon F, Taberlet P (2009) DNA barcoding for ecologists. Trends Ecol Evol 24:110–117PubMed Valentini A, Pompanon F, Taberlet P (2009) DNA barcoding for ecologists. Trends Ecol Evol 24:110–117PubMed
Zurück zum Zitat van der Putten WH, Bardgett RD, Bever JD, Bezemer TM, Casper BB, Fukami T, Kardol P, Klironomos JN, Kulmatiski A, Schweitzer JA (2013) Plant–soil feedbacks: the past, the present and future challenges. J Ecol 101:265–276 van der Putten WH, Bardgett RD, Bever JD, Bezemer TM, Casper BB, Fukami T, Kardol P, Klironomos JN, Kulmatiski A, Schweitzer JA (2013) Plant–soil feedbacks: the past, the present and future challenges. J Ecol 101:265–276
Zurück zum Zitat Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66–74PubMed Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66–74PubMed
Zurück zum Zitat Wardle DA (2002) Communities and ecosystems: linking the aboveground and belowground components. Princeton University Press, Princeton Wardle DA (2002) Communities and ecosystems: linking the aboveground and belowground components. Princeton University Press, Princeton
Zurück zum Zitat Wirta HK, Hebert PD, Kaartinen R, Prosser SW, Várkonyi G, Roslin T (2014) Complementary molecular information changes our perception of food web structure. Proc Natl Acad Sci USA 111:1885–1890PubMedCentralPubMed Wirta HK, Hebert PD, Kaartinen R, Prosser SW, Várkonyi G, Roslin T (2014) Complementary molecular information changes our perception of food web structure. Proc Natl Acad Sci USA 111:1885–1890PubMedCentralPubMed
Zurück zum Zitat Yamamoto S, Sato H, Tanabe AS, Hidaka A, Kadowaki K, Toju H (2014) Spatial segregation and aggregation of ectomycorrhizal and root-endophytic fungi in the seedlings of two Quercus species. PLoS One 9:e96363PubMedCentralPubMed Yamamoto S, Sato H, Tanabe AS, Hidaka A, Kadowaki K, Toju H (2014) Spatial segregation and aggregation of ectomycorrhizal and root-endophytic fungi in the seedlings of two Quercus species. PLoS One 9:e96363PubMedCentralPubMed
Metadaten
Titel
High-throughput DNA barcoding for ecological network studies
verfasst von
Hirokazu Toju
Publikationsdatum
01.01.2015
Verlag
Springer Japan
Erschienen in
Population Ecology / Ausgabe 1/2015
Print ISSN: 1438-3896
Elektronische ISSN: 1438-390X
DOI
https://doi.org/10.1007/s10144-014-0472-z

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