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2019 | OriginalPaper | Buchkapitel

Left Ventricle Quantification Through Spatio-Temporal CNNs

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Abstract

Cardiovascular diseases are among the leading causes of death globally. Cardiac left ventricle (LV) quantification is known to be one of the most important tasks for the identification and diagnosis of such pathologies. In this paper, we propose a deep learning method that incorporates 3D spatio-temporal convolutions to perform direct left ventricle quantification from cardiac MR sequences. Instead of analysing slices independently, we process stacks of temporally adjacent slices by means of 3D convolutional kernels which fuse the spatio-temporal information, incorporating the temporal dynamics of the heart to the learned model. We show that incorporating such information by means of spatio-temporal convolutions into standard LV quantification architectures improves the accuracy of the predictions when compared with single-slice models, achieving competitive results for all cardiac indices and significantly breaking the state of the art [10] for cardiac phase estimation.

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Fußnoten
1
LVQuan Challenge website: https://​lvquan18.​github.​io/​.
 
2
The source code for the proposed architecture is publicly available at https://​github.​com/​alejandrodebus/​SpatioTemporalCN​N_​lvquan.
 
Literatur
2.
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3.
Zurück zum Zitat Peng, P., Lekadir, K., Gooya, A., Shao, L., Petersen, S.E., Frangi, A.F.: A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging. Magn. Reson. Mater. Phys. Biol. Med. 29(2), 155–195 (2016)CrossRef Peng, P., Lekadir, K., Gooya, A., Shao, L., Petersen, S.E., Frangi, A.F.: A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging. Magn. Reson. Mater. Phys. Biol. Med. 29(2), 155–195 (2016)CrossRef
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Zurück zum Zitat Petitjean, C., Dacher, J.N.: A review of segmentation methods in short axis cardiac MR images. Med. Image Anal. 15(2), 169–184 (2011)CrossRef Petitjean, C., Dacher, J.N.: A review of segmentation methods in short axis cardiac MR images. Med. Image Anal. 15(2), 169–184 (2011)CrossRef
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Zurück zum Zitat Suinesiaputra, A., et al.: Quantification of LV function and mass by cardiovascular magnetic resonance: multi-center variability and consensus contours. J. Cardiovasc. Magn. Reson. 17(1), 63 (2015)CrossRef Suinesiaputra, A., et al.: Quantification of LV function and mass by cardiovascular magnetic resonance: multi-center variability and consensus contours. J. Cardiovasc. Magn. Reson. 17(1), 63 (2015)CrossRef
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Zurück zum Zitat Tan, L.K., Liew, Y.M., Lim, E., McLaughlin, R.A.: Convolutional neural network regression for short-axis left ventricle segmentation in cardiac cine MR sequences. Med. Image Anal. 39, 78–86 (2017)CrossRef Tan, L.K., Liew, Y.M., Lim, E., McLaughlin, R.A.: Convolutional neural network regression for short-axis left ventricle segmentation in cardiac cine MR sequences. Med. Image Anal. 39, 78–86 (2017)CrossRef
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Zurück zum Zitat Tran, D., Bourdev, L., Fergus, R., Torresani, L., Paluri, M.: Learning spatiotemporal features with 3D convolutional networks. In: IEEE International Conference on Computer Vision (ICCV), pp. 4489–4497. IEEE (2015) Tran, D., Bourdev, L., Fergus, R., Torresani, L., Paluri, M.: Learning spatiotemporal features with 3D convolutional networks. In: IEEE International Conference on Computer Vision (ICCV), pp. 4489–4497. IEEE (2015)
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Zurück zum Zitat Tran, P.V.: A fully convolutional neural network for cardiac segmentation in short-axis MRI. arXiv preprint arXiv:1604.00494 (2016) Tran, P.V.: A fully convolutional neural network for cardiac segmentation in short-axis MRI. arXiv preprint arXiv:​1604.​00494 (2016)
10.
Zurück zum Zitat Xue, W., Brahm, G., Pandey, S., Leung, S., Li, S.: Full left ventricle quantification via deep multitask relationships learning. Med. Image Anal. 43, 54–65 (2018)CrossRef Xue, W., Brahm, G., Pandey, S., Leung, S., Li, S.: Full left ventricle quantification via deep multitask relationships learning. Med. Image Anal. 43, 54–65 (2018)CrossRef
11.
Zurück zum Zitat Xue, W., Lum, A., Mercado, A., Landis, M., Warrington, J., Li, S.: Full quantification of left ventricle via deep multitask learning network respecting intra- and inter-task relatedness. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 276–284. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_32CrossRef Xue, W., Lum, A., Mercado, A., Landis, M., Warrington, J., Li, S.: Full quantification of left ventricle via deep multitask learning network respecting intra- and inter-task relatedness. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 276–284. Springer, Cham (2017). https://​doi.​org/​10.​1007/​978-3-319-66179-7_​32CrossRef
Metadaten
Titel
Left Ventricle Quantification Through Spatio-Temporal CNNs
verfasst von
Alejandro Debus
Enzo Ferrante
Copyright-Jahr
2019
DOI
https://doi.org/10.1007/978-3-030-12029-0_50