Abstract
Proteins are macromolecular machines. In cases where the reactive centers are relatively small chromophoric units embedded in a protein matrix, they bear a resemblance to more familiar condensed phase materials such are organic mixed crystals or impurity centers in a lattice. Unlike these systems, the protein matrix has a structure that has been fine tuned over the course of evolution for a specific biological function. A major goal of biological research has been to understand how energy is both stored and utilized within these structures for the purpose of biological function. Despite the remarkable success of structural chemists and biochemists in determining the equilibrium structures and the functional properties of many protein, this problem has not been answered on a microscopic level. A major deficiency of this approach is the absence of information on how structural dynamics relates to reactivity. As a case in point, the status structure and functional properties of hemoglobin (Hb) are exceedingly well characterized [1-2], yet even for this well-studied system a detailed microscopic account of the relation between structure and function is lacking. Part of the problem is that, although high-resolution x-ray crystallographic techniques provide detailed information about equilibrium structures, they cannot be readily used to probe the transient structures that link the initial and final functional states of a protein. In recent years significant progress has been made in addressing such problems through the applications of a variety of laser based time resolved spectroscopies. At least in part these advances are the result of a chemical physics perspective based on the analogy with the impurity centers or the organic mixed crystal.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
M.F. Perutz, Proc. R. Soc. London Ser. B208, 135 (1980).
R.G. Shulman, J.J. Hopfield and S. Ogawa, Q. Rev. Biophys. 8, 325 (1975).
J.M. Baldwin and C. Chothia, J. Mol. Biol. 129, 175 (1979).
J.L. Martin, A. Migus, C. Poyart, Y. Lecarpentier, R. Astier and A. Antonetti, Proc. Nat. Acad. Sci. USA 80, 173 (1983).
P.V. Argade, M. Sassaroli, D.L. Rousseau, T. Inubushi, M. Ikeda-Saito and A. Lapidot, J. Amer. Chem. Soc. 106, 6593 (1984).
K. Nagain, T. Kitagawa and H. Morimoto, J. Mol. Biol. 186, 271 (1980)
M.R. Ondrias, D.L. Rousseau, J.A. Shelnutt and S.R. Simon, Biochemistry 21, 3428 (1982).
J.M. Friedman, R.A. Stepnoski and R.W. Noble, FEBS Letters 146, 278 (1982)
J.M. Friedman, Time Resolved Vibrational Spectroscopy, (G. Atkinson, ed.) Academic Press, 307 (1983)
J.M. Friedman in Hemoglobins: Structure and Functions (A.G. Schneck ed.) Brussels University Press, pp. 269–284 (1984)
T.W. Scott, J.M. Friedman, M. Ideka-Saito and T. Yonetani, FEBS Letters 158, 68
J.M. Friedman, T.W. Scott, R.A. Stepnoski, M. Ikeda-Saito and T. Yonetani, J. Biol. Chem. 258, 10564 (1983)
J. M. Friedman, Science 228, 1273 (1985)
J.M. Friedman, S.R. Simon and T.W. Scott, Copeia 3, 679 (1985)
P. Stein, J. Lerner and T.G. Spiro, J. Phys. Chem. 86, 168 (1982).
M. Tsubaki and N.-T. Yu, Biochemistry 21, 1140–1145 (1982)
D.L. Rousseau, S.L. Tan, M.R. Ondrias, S. Ogawa and R.W. Noble, Biochemistry 23, 2857–2865 (1984)
D.L. Rousseau and M.R. Ondrias, Biophys. J. 47, 726–734 (1985)
M. Chance, L. Parkhurst, L. Powers and B. Chance, J. Biol. Chem. 261, 5689 (1986)
S. Pin, P. Valat, R. Cortes, A. Michalowicz and B. Alpert, Biophys. J. 48, 997 (1985)
A. Bianconi, A. Congin-Castellano, M. Dell’Ariccia and A. Biovanelli, FEBS Letters, in press.
E.W. Findsen, J.M. Friedman, M.R. Ondrias and S.R. Simon, Science 229, 661 (1985).
B. Campbell, J.M. Friedman and S.R. Simon, to be published.
T.W. Scott and J.M. Friedman, J. Amer. Chem. Soc. 106, 5677 (1984).
J. Hofrichter, J.H. Sommer, E.R. Henry and W.A. Eaton, Proc. Nat. Acad. Sci. USA 80, 2235 (1983)
J. Hofrichter, E.R. Henry, J. Sommer, R. Deutch, M. Ikeda-Saito, T. Yonetani and W.A. Eaton, Biochemistry 24, 2267 (1985).
J.A. Shelnutt, D.L. Rousseau, J.M. Friedman and S.R. Simon, Proc. Nat. Acad. Sci. USA 76, 4409 (1979).
J.M. Friedman, D.L. Rousseau and M.R. Ondrias, Ann. Rev. Phys. Chem. 33, 471 (1982).
T.G. Spiro, in Iron Porphyrins Vol. II, Lever, A.B.P. and Gray, H.B., eds., Addison-Wesley, MA (1983).
D.L. Rousseau and J.M. Friedman, to appear in Bioloical Applications of Raman Spectroscopy, (T.G. Spiro, ed.) Vol. 3.
K.B. Lyons and J.M. Friedman, in Hemoglobin and Oxygen Binding, C. Ho., Ed. (Elsevier, New York, 1982) pp. 333–338.
P.V. Argade and D.L. Rousseau, Proc. Natl. Acad. Sci. USA
M. Sassauoli, S. Dargupta and D.L. Rousseau, submitted.
L. Powers, B. Chance, M. Chance, B. Campbell, J.M. Friedman, K.S. Reedy and Y. Zhou, in preparation.
K.B. Lyons, J.M. Friedman and P.A. Fleurey, Nature 275, 565 (1978).
J. Terner, T.G. Spiro, M. Nagumo, M.F. Nicol and M.A. El Sayed, J. Amer. Soc. 102, 3238 (1980)
J. Terner, J.D. Strong, T.G. Spiro, N. Nagumo, N.F. Nicol and M.A. El Sayed, Proc. Nat. Acad. Sci. USA 78, 1313 (1981).
E.W. Findsen, T.W. Scott, M.R. Chance, J.M. Friedman and M.R. Ondrias, J. Am. Chem. Soc. 107, 3355 (1985).
S. Dasgupta, T.G. Spiro, C.K. Johnson, G.A. Dalickas and R.M. Hochstrasser, Biochemistry 24, 5295 (1985).
E.W. Findsen, J.M. Friedman and M.R. Ondrias, unpublished results.
M.R. Ondrias, J.M. Friedman and D.L. Rousseau, Science 220, 615 (1983).
B. Chance, R. Fischetti and L. Powers, J. Am. Chem. Soc. 2, 3820 (1983)
L. Powers, J.L. Sessler, G.L. Woolery and B. Chance, Biochemistry 23, 5519 (1984).
Q.H. Gibson, Biochem. J. 71, 293 (1959).
B.I. Greene, R.M. Hochstrasser, R.B. Weisman, W.A. Eaton, Proc. Natl. Acad. Sci. USA 75, 5255 (1978)
D.A. Chernoff, R.M. Hochstrasser and A.W. Steele, Proc. Nat. Acad. Sci. USA 77, 5606 (1980)
P.A. Cornelius, R.M. Hochstrasser, A.W. Steel, J. Mol. Biol. 163, 119 (1983)
C.V. Shank, E.P. Ippen and R. Bersohn, Science 193, 50 (1976)
A.H. Reynolds and P.M. Rentzepis, Biophys. J. 38, 15 (1982).
J.M. Friedman, M.R. Ondrias, E.W. Findsen and S.R. Simon, Proceedings SPIE 533, 8 (1985).
J.M. Friedman, in Time-Resolved Vibrational Sepctroscopy, p. 204, A. Laubereau and M. Stockbinger, eds. Springer-Verlag, Berlin, Heidelberg (1985).
J.M. Friedman, D.L. Rousseau, M.R. Ondrias and R.A. Stepnoski, Science 218, 1244 (1982).
B.R. Gelin and M. Karplus, Proc. Nat. Acad. Sci. USA 74, 801–805 (1977)
B.R. Gelin, A.W-M. Lee and M. Karplus, J. Mol. Biol. 171, 489 (1983).
O. Bancharoenpaurpong, K.T. Schomacker and P.M. Champion, J. Am. Chem. Soc. 106, 5688 (1984).
B.D. Olafson and W.A. Goddard, Proc. Natl. Acad. Sci. USA 74, 1315 (1979)
W.A. Goddard and B.D. Olafson, in Biochemical and Chemical Aspects of Oxygen, (W. Caughy, ed.) Academic Press, New York, 87–123 (1979)
A. Warshel, Proc. Natl. Acad. Sci. USA ait 74, 1789 (1977).
E.R. Henry and W.A. Eaton, Biophysical J. 47, 208a (1985)
E.R. Henry, M. Levitt and W.A. Eaton, Proc. Natl. Acad. Sci. USA 82, 2034 (1985).
D. Sasgupta, R.A. Copeland and T.G. Spiro, J. Biol. Chem., in press.
H. Hartman, F. Parak, W. Steigmann, G.A. Petsko, D. Ringe, N. Ponzi and H. Frauenfelder, Proc. Nat. Acad. Sci. USA 79, 4967 (1982).
B. Campbell and J.M. Friedman, unpublished results.
J.O. Alben, D. Beece, S.F. Bowne, W. Doster, L. Eisenstein, H. Frauenfelder, D. Good, J.D. McDonald, M.C. Marden, P.P. Moh, L. Reinisch, A.H. Reynolds, E. Shyamsunder and K.T. Yue, Proc. Natl. Acad. Sci. USA 79, 3744 (1982)
F.G. Fiamingo and J.O. Alben, Biochemistry 24, 7964 (1985).
J.M. Friedman, T.W. Scott, G.J. Fisanick, S.R. Simon, E.W. Findsen, M.R. Ondrias and V.R. Macdonald, Science 229, 187 (1985).
S. Matsukawa, K. Mawatari, Y. Yoneyama and T. Kitagawa, J. Am. Chem. Soc. 107, 1108 (1985).
T.W. Scott, J.M. Friedman and V.W. Macdonald, J. Am. Chem. Soc. 107, 3702 (1985).
R.J. Morris and Q.H. Gibson, J. Biol. Chem. 259, 265 (1984)
E.R. Henry, J. Hofrichter, J.H. Sommer and W.A. Eaton, in Proceedings of International Conference on Photochemistry and Photobiology (1983), A. Zewail, ed. (Harwood Academic Publishers, New York) pp. 791–809.
D.A. Duddell, R.J. Morris and J.T. Richards, J.C.S. Chem. Comm., 75–76 (1979)
D.A. Duddell, R.J. Morris, N.J. Muttucuman and J.T. Richard, Photochem. Photobiol. 31, 479–484 (1980)
B. Alpert, S. El Moshni, L. Lindquist and F. Tfibel, Chem. Phys. Lett. 64, 11–16 (1979)
J.M. Friedman and K.B. Lyons, Nature 284, 570–476 (1980).
R.H. Austin, K.W. Beeson, L. Eisenstein, H. Frauenfelder and I.C. Grunsalus, Biochemistry 14, 5355 (1975)
N. Alberding, S.S. Chan, L. Eisenstein, H. Frauenfelder, D. Good, I.C. Gunsalus, T.M. Nordlund, M.F. Perutz, A.H. Reynolds and L.B. Sorenson, Biochemistry 17, 43 (1978)
D.D. Dlott, H. Frauenfelder, P. Langer, H. Roder and E.E. Dilorio, Proc. Natl. Acad. Sci. USA 80, 623 (1983).
B.F. Campbell, PhD Thesis, University of California at San Diego (1985).
B. Campbell and J.M. Friedman, unpublished results.
N. Agmon and J.J. Hopfield, J. Chem. Phys. 79, 2042 (1983).
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1987 Springer Science+Business Media New York
About this chapter
Cite this chapter
Friedman, J., Campbell, B. (1987). Structural Dynamics and Reactivity in Hemoglobin. In: Austin, R., et al. Protein Structure. Proceedings in Life Sciences. Springer, New York, NY. https://doi.org/10.1007/978-1-4612-4796-8_14
Download citation
DOI: https://doi.org/10.1007/978-1-4612-4796-8_14
Publisher Name: Springer, New York, NY
Print ISBN: 978-1-4612-9159-6
Online ISBN: 978-1-4612-4796-8
eBook Packages: Springer Book Archive