Skip to main content

Azalea Phylogeny Reconstructed by Means of Molecular Techniques

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 589))

Abstract

Plants belonging to the Rhododendron subgenera Pentanthera (deciduous) and Tsutsusi and Azaleastrum (evergreen) are called azaleas. Concerning their mutual phylogenetic positions, the Pentanthera subgenus is closer to evergreen rhododendrons (subgenera Rhododendron and Hymenanthes) than to the Tsutsusi subgenus. Both azalea types are important ornamentals with a long breeding tradition. Different hybrid groups are often named after the supposed principal ancestor species. Molecular techniques for phylogenetic and kinship research have been evaluated to a great extent. First, some studies using comparative gene sequencing are presented; this approach was then widened to the use of molecular markers to reveal more detailed genetic relationships. Finally, the use of candidate genes as functional markers for the assessment of genetic diversity is presented. This opens new research lines to the genetic mapping of plant traits and azalea genomics.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Chamberlain DF, Hyam G, Argent G, Fairweather G, Walter K (1996) The genus Rhododendron. Its classification & synonymy. Royal Botanical Garden, Edinburgh

    Google Scholar 

  2. Heursel J (1999) Azalea’s: oorsprong, veredeling en cultivars. Lannoo, Tielt

    Google Scholar 

  3. Kron KA (1997) Phylogenetic relationships of Rhododendroideae (Ericaceae). Am J Bot 84:973–980

    Article  CAS  Google Scholar 

  4. Kron KA (2002) Phylogenetic relationships and major clades of Rhododendron (Rhodoreae, Ericoideae, Ericaceae) In: Argent G, McFarlane M (eds) Rhododendrons in horticulture and science. Royal Botanic Garden, Edinburgh, pp 79–85

    Google Scholar 

  5. Heursel J, De Roo R (1981) Polyploidy in evergreen azaleas. Hort Sci 16:765–766

    Google Scholar 

  6. Heursel J (1976) Die Vererbung des Merkmals “hose in hose” (Doppelkronigkeit) bei Azaleen. Gartenwelt 76:111–113

    Google Scholar 

  7. Heursel J, Horn W (1977) A hypothesis on the inheritance of flower colours and flavonoids in Rhododendron simsii Planch. Z Pflanzenzüchtung 79:238–249

    CAS  Google Scholar 

  8. Heursel J, Garretsen F (1989) Inheritance of corolla size, number of stamens and percentage of plants with petaloid stamens in evergreen azaleas (Rhododendron Subsect. obtusa). Plant Breed 103:304–309

    Google Scholar 

  9. Chamberlain DF, Rae SJ (1990) A revision of Rhododendron IV Subgenus Tsutsusi. Edinburgh J Bot 47:89–200

    Article  Google Scholar 

  10. Hilu KW, Liang H (1997) The matK gene: sequence variation and application in plant systematics. Am J Bot 84:830–839

    Article  CAS  Google Scholar 

  11. Kron KA (1993) A revision of Rhododendron section Pentanthera. Edinburgh J Bot 50:249–363

    Article  Google Scholar 

  12. Goetsch L, Eckert AJ, Hall BD (2005) The molecular systematics of Rhododendron (Ericaceae): a phylogeny based upon PRB2 gene sequences. Syst Bot 30:616–626

    Article  Google Scholar 

  13. Scheiber SM, Jarret RL, Robacker CD, Newman M (2000) Genetic relationships within Rhododendron L. section Pentanthera G. Don based on sequences of the internal transcribed spacer (ITS) region. Sci Hort 85:123–135

    Google Scholar 

  14. Brown GK, Craven LA, Udovicic F, Ladiges PY (2006) Phylogeny of Rhododendron section Vireya (Ericaceae) based on two non-coding regions of cpDNA. Plant Syst Evol 257:57–93

    Article  CAS  Google Scholar 

  15. Brown GK, Craven LA, Udovicic F, Ladiges PY (2006) Phylogenetic relationships of Rhododendron section Vireya (Ericaceae) inferred from the ITS nrDNA region. Aust Syst Bot 19:329–342

    Article  CAS  Google Scholar 

  16. Kurashige Y, Mine M, Kobayashi N, Handa T, Takayanagi K, Yukawa T (1998) Investigation of sectional relationships in the genus Rhododendron (Ericaceae) based on matK sequences. J Jpn Bot 73:143–154

    Google Scholar 

  17. Kurashige Y, Etoh JI, Handa T, Takayanagi K, Yukawa T (2001) Sectional relationships in the genus Rhododendron (Ericaceae): evidence from matK and trnK sequences. Plant Syst Evol 228:1–14

    Article  CAS  Google Scholar 

  18. Kobayashi N, Kawashima S, Handa T, Takayanagi K, Arisumi K (1998) Introgression in Japanese evergreen azaleas (Rhododendron kiusianum and R. kamepferi). Acta Hortic 454:325–328

    Google Scholar 

  19. Yukawa T, Koga S, Handa T (2000) DNA uncovers paraphyly of Dendrobium (Orchidaceae). In: Andrews S et al (eds) Taxonomy of cultivated plants. Royal Botanic Gardens, Kew, London, pp 351–354

    Google Scholar 

  20. Swofford DL (1993) PAUP: phylogenetic analysis using parsimony, version 3.1. Computer program distributed by the Illinois Natural History Survey, Champaign, IL

    Google Scholar 

  21. Maddison DR (1991) The discovery and importance of multiple islands of most-parsimonious trees. Syst Zool 40:315–328

    Article  Google Scholar 

  22. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416

    Article  Google Scholar 

  23. Swofford DL, Maddison WP (1987) Reconst­ructing ancestral character states under Wagner parsimony. Math Biosci 87:199–299

    Article  Google Scholar 

  24. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  25. Hwang-ShihYing, Hsu-KuoKai (2001) Molecular phylogeny of eight Taiwanese Rhododendron species based on chloroplast trnF-trnL DNA sequences. Taiwan J For Sci 16:153–160

    Google Scholar 

  26. Gao-LianMing, Yang-JunBo, Zhang-ChangQin, Li-DeZhu (2002) Phylogenetic relationship of subgenus Tsutsusi (Rhodo­dendron) based on ITS sequences. Acta Bot Yunnanica 24:313–320

    Google Scholar 

  27. Scariot V, Handa T, De Riek J (2007) A contribution to the classification of evergreen azalea cultivars located in the Lake Maggiore area (Italy) by means of AFLP markers. Euphytica 158:47–66

    Article  Google Scholar 

  28. Yamazaki T (1996) A revision of the genus Rhododendron in Japan, Taiwan, Korea and Sakhalin. Tsumura Laboratory, Tokyo, pp 1–125

    Google Scholar 

  29. Heursel J (1987) Inheritance of flower colours and breeding of evergreen azaleas. J Am Rhododendron Soc 41:141–145

    Google Scholar 

  30. Dendauw J, De Riek J, De Loose M, Van Bockstaele E (2002) Identification of 33 Chinese Rhododendron species using matK sequences and AFLP data. Acta Hortic 572:169–177

    CAS  Google Scholar 

  31. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Fijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 21:4407–4414

    Article  Google Scholar 

  32. De Riek J, Dendauw J, Mertens M, De Loose M, Heursel J, Van Bockstaele E (1999) Validation of criteria for the selection of AFLP markers to assess the genetic variation of a breeders’ collection of evergreen azaleas. Theor Appl Genet 99:1155–1165

    Article  Google Scholar 

  33. Pearson WR, Lipman DJ (1988) Proc Natl Acad Sci USA 85:2444–2448

    Article  CAS  PubMed  Google Scholar 

  34. De Keyser E, De Riek J, Van Bockstaele E (2009) Discovery of species-wide EST-derived markers in Rhododendron by intron-flanking primer design. Mol Breed 23:171–178

    Article  CAS  Google Scholar 

  35. Scariot V, De Keyser E, Handa T, De Riek J (2007) Comparative study of the discriminating capacity and effectiveness of AFLP, STMS and EST markers in assessing genetic relationships among evergreen azaleas. Plant Breed 126:207–212

    Article  CAS  Google Scholar 

  36. Dendauw J, De Riek J, Arens P, Van Bockstaele E, Vosman B, De Loose M (2001) Development of sequenced tagged microsatellite site (STMS) markers in azalea. Acta Hortic 546:193–197

    CAS  Google Scholar 

  37. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491

    CAS  PubMed  Google Scholar 

  38. Schneider S, Roessli D, Excoffier L (2000) Arlequin: a software for population genetics data analysis, version 2.000. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland

    Google Scholar 

  39. Handa T, Eto J, Kita K, Kobayashi N (2002) Genetic diversity of Japanese wild evergreen azaleas in Kyushu (south main island of Japan) characterized by AFLP. Acta Hortic 572:159–161

    CAS  Google Scholar 

  40. Kobayashi N, Handa T, Yoshimura K, Tsumura Y, Arisumi K, Takayanagi K (2000) Evidence for introgressive hybridization based on chloroplast DNA polymorphisms and morphological variation in wild evergreen azalea populations in the Kirishima Mountains, Japan. Edinburgh J Bot 57:209–219

    Article  Google Scholar 

  41. Dunemann F, Kahnau R, Stange I (1999) Analysis of complex leaf and flower characters in Rhododendron using a molecular linkage map. Theor Appl Genet 98:1146–1155

    Article  CAS  Google Scholar 

  42. De Keyser E, De Riek J, Van Bockstaele E (2007) Gene expression profiling of key enzymes in azalea flower colour biosynthesis. Acta Hortic 743:107–113

    Google Scholar 

Download references

Acknowledgments

The authors wish to thank Romain Uytterhaegen for his hands-on experience in azalea breeding and cultivation, Veerle Buysens, Veerle Cools and Laurence Desmet for their efforts in doing DNA preparations and AFLP, STMS and EST-reactions. The whole staff of the biotech lab was very much appreciated for their support and skilful assistance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ellen De Keyser .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Humana Press, a part of Springer Science+Business Media, LLC

About this protocol

Cite this protocol

De Keyser, E., Scariot, V., Kobayashi, N., Handa, T., De Riek, J. (2010). Azalea Phylogeny Reconstructed by Means of Molecular Techniques. In: Jain, S., Ochatt, S. (eds) Protocols for In Vitro Propagation of Ornamental Plants. Methods in Molecular Biology, vol 589. Humana Press. https://doi.org/10.1007/978-1-60327-114-1_30

Download citation

  • DOI: https://doi.org/10.1007/978-1-60327-114-1_30

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-60327-390-9

  • Online ISBN: 978-1-60327-114-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics