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2016 | OriginalPaper | Buchkapitel

Deep Neural Networks for Fast Segmentation of 3D Medical Images

verfasst von : Karl Fritscher, Patrik Raudaschl, Paolo Zaffino, Maria Francesca Spadea, Gregory C. Sharp, Rainer Schubert

Erschienen in: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016

Verlag: Springer International Publishing

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Abstract

During the last years Deep Learning and especially Convolutional Neural Networks (CNN) have set new standards for different computer vision tasks like image classification and semantic segmentation. In this paper, a CNN for 3D volume segmentation based on recently introduced deep learning components will be presented. In addition to using image patches as input for a CNN, the usage of orthogonal patches, which combine shape and locality information with intensity information for CNN training will be evaluated. For this purpose a publically available CT dataset of the head-neck region has been used and the results have been compared with other state-of-the art atlas- and model-based segmentation approaches.
The presented approach is fully automated, fast and not restricted to specific anatomical structures. Quantitative evaluation provides good results and shows the great potential of deep learning approaches for the segmentation of medical images.

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Literatur
1.
Zurück zum Zitat LeCun, Y., Bottou, L., Bengio, Y., Haffner, P.: Gradient-based learning applied to document recognition. Proc. IEEE 86(11), 2278–2324 (1998)CrossRef LeCun, Y., Bottou, L., Bengio, Y., Haffner, P.: Gradient-based learning applied to document recognition. Proc. IEEE 86(11), 2278–2324 (1998)CrossRef
2.
Zurück zum Zitat Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: Advance in Neural Information processing systems, pp. 1097–1105 (2012) Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: Advance in Neural Information processing systems, pp. 1097–1105 (2012)
3.
Zurück zum Zitat Ciresan, D.C., Gambardella, L.M., Giusti, A., Schmidhuber, J.: Deep neural net- works segment neuronal membranes in electron microscopy images. In: NIPS. pp. 2852–2860 (2012) Ciresan, D.C., Gambardella, L.M., Giusti, A., Schmidhuber, J.: Deep neural net- works segment neuronal membranes in electron microscopy images. In: NIPS. pp. 2852–2860 (2012)
4.
5.
Zurück zum Zitat Brebisson, A., Montana, G.: Deep Neural Networks for Anatomical Brain Segmentation. In: Proceedings of the IEEE CVPR Workshops, pp. 20–28 (2015) Brebisson, A., Montana, G.: Deep Neural Networks for Anatomical Brain Segmentation. In: Proceedings of the IEEE CVPR Workshops, pp. 20–28 (2015)
6.
Zurück zum Zitat Kamnitsas, K., Chen, L., Ledig, C., Rueckert, D., Glocker, B.: Multi-scale 3D convolutional neural networks for lesion segmentation in brain MRI. Ischemic Stroke Lesion Segmentation, p. 13 (2015) Kamnitsas, K., Chen, L., Ledig, C., Rueckert, D., Glocker, B.: Multi-scale 3D convolutional neural networks for lesion segmentation in brain MRI. Ischemic Stroke Lesion Segmentation, p. 13 (2015)
7.
Zurück zum Zitat Prasoon, A., Petersen, K., Igel, C., Lauze, F., Dam, E., Nielsen, M.: Deep feature learning for knee cartilage segmentation using a triplanar convolutional neural network. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part II. LNCS, vol. 8150, pp. 246–253. Springer, Heidelberg (2013)CrossRef Prasoon, A., Petersen, K., Igel, C., Lauze, F., Dam, E., Nielsen, M.: Deep feature learning for knee cartilage segmentation using a triplanar convolutional neural network. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part II. LNCS, vol. 8150, pp. 246–253. Springer, Heidelberg (2013)CrossRef
8.
Zurück zum Zitat Roth, H.R., Lu, L., Farag, A., Shin, H.-C., Liu, J., Turkbey, E.B., Summers, R.M.: DeepOrgan: multi-level deep convolutional networks for automated pancreas segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015, Part I. LNCS, vol. 9349, pp. 556–564. Springer, Heidelberg (2015)CrossRef Roth, H.R., Lu, L., Farag, A., Shin, H.-C., Liu, J., Turkbey, E.B., Summers, R.M.: DeepOrgan: multi-level deep convolutional networks for automated pancreas segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015, Part I. LNCS, vol. 9349, pp. 556–564. Springer, Heidelberg (2015)CrossRef
11.
Zurück zum Zitat Hinton, G.E., Srivastava, N., Krizhevsky, A., Sutskever, I., Salakhutdinov, R.R.: Improving neural networks by preventing co-adaptation of feature detectors (2012). arXiv preprint arXiv:1207.0580 Hinton, G.E., Srivastava, N., Krizhevsky, A., Sutskever, I., Salakhutdinov, R.R.: Improving neural networks by preventing co-adaptation of feature detectors (2012). arXiv preprint arXiv:​1207.​0580
12.
Zurück zum Zitat Ioffe, S., Szegedy, C.: Batch normalization: Accelerating deep network training by reducing internal covariate shift (2015). arXiv preprint arXiv:1502.03167 Ioffe, S., Szegedy, C.: Batch normalization: Accelerating deep network training by reducing internal covariate shift (2015). arXiv preprint arXiv:​1502.​03167
13.
Zurück zum Zitat Noh, H., Hong, S., Han, B.: Learning deconvolution network for semantic segmentation. In: Proceedings of IEEE ICCV, pp. 1520–1528 (2015) Noh, H., Hong, S., Han, B.: Learning deconvolution network for semantic segmentation. In: Proceedings of IEEE ICCV, pp. 1520–1528 (2015)
14.
Zurück zum Zitat Bengio, Y., Simard, P., Frasconi, P.: Learning long-term dependencies with gradient descent is difficult. IEEE Trans. Neural Networks 5(2), 157–166 (1994)CrossRef Bengio, Y., Simard, P., Frasconi, P.: Learning long-term dependencies with gradient descent is difficult. IEEE Trans. Neural Networks 5(2), 157–166 (1994)CrossRef
15.
Zurück zum Zitat Glorot, X., Bordes, A., Bengio, Y.: Deep sparse rectifier neural networks. In: International Conference on Artificial Intelligence and Statistics, pp. 315–323 (2011) Glorot, X., Bordes, A., Bengio, Y.: Deep sparse rectifier neural networks. In: International Conference on Artificial Intelligence and Statistics, pp. 315–323 (2011)
18.
Zurück zum Zitat He, K., Zhang, X., Ren, S., Sun, J.: Delving deep into rectifiers: surpassing human-level performance on imagenet classification. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1026–1034 (2015) He, K., Zhang, X., Ren, S., Sun, J.: Delving deep into rectifiers: surpassing human-level performance on imagenet classification. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1026–1034 (2015)
Metadaten
Titel
Deep Neural Networks for Fast Segmentation of 3D Medical Images
verfasst von
Karl Fritscher
Patrik Raudaschl
Paolo Zaffino
Maria Francesca Spadea
Gregory C. Sharp
Rainer Schubert
Copyright-Jahr
2016
DOI
https://doi.org/10.1007/978-3-319-46723-8_19