Abstract
Lateral membrane heterogeneity, in the form of lipid rafts and microdomains, is currently implicated in cell processes including signal transduction, endocytosis, and cholesterol trafficking. Various biophysical techniques have been used to detect and characterize lateral membrane domains. Among these, Förster resonance energy transfer (FRET) has the crucial advantage of being sensitive to domain sizes smaller than 50-100 nm, below the resolution of optical microscopy but, apparently, similar to those of rafts in cell membranes. In the last decade, several formalisms for the analysis of FRET in heterogeneous membrane systems have been derived and applied to the study of microdomains. They are critically described and illustrated here.
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Abbreviations
- BSM:
-
Brain sphingomyelin
- CFM:
-
Confocal fluorescence microscopy
- Chol:
-
Cholesterol
- Dansyl-PC:
-
2-[12-[(5-Dimethylamino-1-naphthalenesulfonyl)amino]dodecanoyl]-PC
- DHE:
-
Dehydroergosterol
- DiIC12(3):
-
1,1′-Didodecyl-3,3,3′,3′-tetramethylindocarbocyanine
- DiIC18(3):
-
1,1′-Dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine
- DMPC:
-
1,2-Dimyristoyl-sn-glycero-3-phosphocholine
- DOPC:
-
1,2-Dioleoyl-sn-glycero-3-phosphocholine
- DPH:
-
1,6-Diphenylhexatriene
- DPH-PC:
-
1-Palmitoyl-2-[3-(diphenylhexatrienyl)propanoyl]-sn-glycero-3-phosphocholine
- DPPC:
-
1,2-Dipalmitoyl-sn-glycero-3-phosphocholine
- DPPS:
-
1,2-Dipalmitoyl-sn-glycero-3-phosphoserine
- DSPC:
-
1,2-Distearoyl-sn-glycero-3-phosphocholine
- FRET:
-
Förster resonance energy transfer
- ld:
-
Liquid disordered
- lo:
-
Liquid ordered
- Marina Blue:
-
1-[[(6,8-Difluoro-7-hydroxy-4-methyl-2-oxo-2H-1-benzopyran-3-yl)acetyl]oxy]
- NBD:
-
7-Nitrobenz-2-oxa-1,3-diazol-4-yl
- NBD-DLPE:
-
N-NBD-1,2-dilauroyl-sn-glycero-3-phosphoethanolamine
- NBD-DMPE:
-
N-NBD-dimyristoylphosphatidylethanolamine
- NBD-DPPE:
-
N-NBD-1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine
- NBD-PC:
-
1-Palmitoyl-2-[12-NBD-aminododecanoyl]-sn-glycero-3-phosphocholine
- PC:
-
Phosphatidylcholine
- PI(4,5)P2 :
-
Phosphatidylinositol-4,5-bisphosphate
- PIP2 :
-
Phosphatidylinositol bisphosphate
- POPC:
-
1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine
- POPE:
-
1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine
- PS:
-
Phosphatidylserine
- PSM:
-
Palmitoyl-SM
- RDF:
-
Radial distribution function
- Rh-DMPE:
-
N-(lissamine–rhodamine B)-dimyristoylphosphatidylethanolamine
- Rh-DOPE:
-
N-(lissamine–rhodamine B)-dioleoylphosphatidylethanolamine
- Rh-DPPE:
-
N-(lissamine–rhodamine B)-dipalmitoylphosphoethanolamine
- SM:
-
Sphingomyelin
- t-PnA:
-
trans-Parinaric acid
References
Adair BD, Engelman DM (1994) Glycophorin A helical transmembrane domains dimerize in phospholipid bilayers: a resonance energy transfer study. Biochemistry 33:5539–5544
Almeida PFF, Vaz WLC, Thompson TE (1992) Lateral diffusion in the liquid-phases of dimyristoylphosphatidylcholine cholesterol lipid bilayers—a free-volume analysis. Biochemistry 31:6739–6747
Baumgart T, Hunt G, Farkas ER, Webb WW, Feigenson GW (2007) Fluorescence probe partitioning between lo/ld phases in lipid membranes. Biochim Biophys Acta 1768:2182–2194
Berney C, Danuser G (2003) FRET or no FRET: a quantitative comparison. Biophys J 84:3992–4010
Brown RE (1998) Sphingolipid organization in biomembranes: what physical studies of model membranes reveal. J Cell Sci 111:1–9
Brown AC, Towles KB, Wrenn SP (2007a) Measuring raft size as a function of membrane composition in PC-based systems: part I—binary systems. Langmuir 23:11180–11187
Brown AC, Towles KB, Wrenn SP (2007b) Measuring raft size as a function of membrane composition in PC-based systems: part II—ternary systems. Langmuir 23:11188–11196
Buboltz JT (2007) Steady-state probe-partitioning FRET: a simple and robust tool for the study of membrane phase behavior. Phys Rev E 76:021903
Buboltz JT, Bwalya C, Reyes S, Kamburov D (2007a) Stern–Volmer modeling of steady-state Förster energy transfer between dilute, freely diffusing membrane-bound fluorophores. J Chem Phys 127:215101
Buboltz JT, Bwalya C, Williams K, Schutzer M (2007b) High-resolution mapping of phase behavior in a ternary lipid mixture: do lipid-raft phase boundaries depend on the sample preparation procedure? Langmuir 23:11968–11971
Corry B, Jayatilaka D, Rigby P (2005) A flexible approach to the calculation of resonance energy transfer efficiency between multiple donors and acceptors in complex geometries. Biophys J 89:3822–3836
Coutinho A, Loura LM, Fedorov A, Prieto M (2008) Pinched multilamellar structure of aggregates of lysozyme and phosphatidylserine-containing membranes revealed by FRET. Biophys J 95:4726–4736
Davenport L (1997) Fluorescence probes for studying membrane heterogeneity. Meth Enzymol 278:487–512
Davenport L, Dale RE, Bisby RH, Cundall RB (1985) Transverse location of the fluorescent probe 1,6-diphenyl-1,3,5-hexatriene in model lipid bilayer membrane systems by resonance energy transfer. Biochemistry 24:4097–4108
de Almeida RFM, Loura LMS, Fedorov A, Prieto M (2002) Nonequilibrium phenomena in the phase separation of a two-component lipid bilayer. Biophys J 82:823–834
de Almeida RFM, Fedorov A, Prieto M (2003) Sphingomyelin/phosphatidylcholine/cholesterol phase diagram: boundaries and composition of lipid rafts. Biophys J 85:2406–2416
de Almeida RFM, Loura LMS, Prieto M, Watts A, Fedorov A, Barrantes FJ (2004) Cholesterol modulates the organization of the γM4 transmembrane domain of the muscle nicotinic acetylcholine receptor. Biophys J 86:2261–2272
de Almeida RFM, Loura LMS, Fedorov A, Prieto M (2005) Lipid rafts have different sizes depending on membrane composition: a time-resolved fluorescence resonance energy transfer study. J Mol Biol 346:1109–1120
de Almeida RFM, Borst J, Fedorov A, Prieto M, Visser AJWG (2007) Complexity of lipid domains and rafts in giant unilamellar vesicles revealed by combining imaging and microscopic and macroscopic time-resolved fluorescence. Biophys J 93:539–553
Demidov AA (1999) Use of a Monte Carlo method in the problem of energy migration in molecular complexes. In: Andrews DL, Demidov AA (eds) Resonance energy transfer. Wiley, New York., pp 435–465
Dietrich C, Bagatolli LA, Volovyk ZN, Thompson NL, Levi Jacobson K, Gratton E (2001) Lipid rafts reconstituted in model membranes. Biophys J 80:1417–1428
Fernandes F, Loura LMS, Prieto M, Koehorst R, Spruijt R, Hemminga MA (2003) Dependence of M13 major coat protein oligomerization and lateral segregation on bilayer composition. Biophys J 85:2430–2441
Fernandes F, Loura LMS, Fedorov A, Prieto M (2006) Absence of clustering of phosphatidylinositol-(4,5)-bisphosphate in fluid phosphatidylcholine. J Lipid Res 47:1521–1525
Fernandes F, Loura LMS, Chichón FJ, Carrascosa JL, Fedorov A, Prieto M (2008) Role of helix 0 of the N-BAR domain in membrane curvature generation. Biophys J 94:3065–3073
Förster T (1949) Experimentelle und theoretische Untersuchung des Zwischenmolekularen übergangs von Elektrinenanregungsenergie. Z Naturforsch 4a:321–327
Franquelim HG, Loura LM, Santos NC, Castanho MA (2008) Sifuvirtide screens rigid membrane surfaces. Establishment of a correlation between efficacy and membrane domain selectivity among HIV fusion inhibitor peptides. J Am Chem Soc 130:6215–6223
Frazier ML, Wright JR, Pokorny A, Almeida PF (2007) Investigation of domain formation in sphingomyelin/cholesterol/POPC mixtures by fluorescence resonance energy transfer and Monte Carlo simulations. Biophys J 92:2422–2433
Frederix P, de Beer EL, Hamelink W, Gerritsen HC (2002) Dynamic Monte Carlo simulations to model FRET and photobleaching in systems with multiple donor–acceptor interactions. J. Phys Chem B 106:6793–6801
Fung BK, Stryer L (1978) Surface density determination in membranes by fluorescence energy transfer. Biochemistry 17:5241–5248
Goñi FM, Alonso A, Bagatolli LA, Brown RE, Marsh D, Prieto M, Thewalt JL (2008) Phase diagrams of lipid mixtures relevant to the study of membrane rafts. Biochim Biophys Acta 1781:665–684
Goswami D, Gowrishankar K, Bilgrami S, Ghosh S, Raghupathy R, Chadda R, Vishwakarma R, Rao M, Mayor S (2008) Nanoclusters of GPI-anchored proteins are formed by cortical actin-driven activity. Cell 135:1085–1097
Gutierrez-Merino C (1981) Quantitation of the Förster energy transfer for two-dimensional systems. I. Lateral phase separation in unilamellar vesicles formed by binary phospholipid mixtures. Biophys Chem 14:247–257
Hell SW (2009) Microscopy and its focal switch. Nat Methods 6:24–32
Holt A, de Almeida RFM, Nyholm TK, Loura LMS, Daily AE, Staffhorst RW, Rijkers DT, Koeppe RE 2nd, Prieto M, Killian JA (2008) Is there a preferential interaction between cholesterol and tryptophan residues in membrane proteins? Biochemistry 47:2638–2649
Ipsen JH, Karlström G, Mouritsen OG, Wennerström H, Zuckermann MJ (1987) Phase equilibria in the phosphatidylcholine–cholesterol system. Biochim Biophys Acta 905:162–172
Jacobson K, Mouritsen OG, Anderson RG (2007) Lipid rafts: at a crossroad between cell biology and physics. Nat Cell Biol 9:7–14
Jørgensen K, Mouritsen OG (1995) Phase separation dynamics and lateral organization of two-component lipid membranes. Biophys J 69:942–954
Kiskowski MA, Kenworthy AK (2007) In silico characterization of resonance energy transfer for disk-shaped membrane domains. Biophys J 92:3040–3051
Leidy C, Wolkers WF, Jørgensen K, Mouritsen OG, Crowe JH (2001) Lateral organization and domain formation in a two-component lipid membrane system. Biophys J 80:1819–1828
Li M, Reddy LG, Bennett R, Silva ND Jr, Jones LR, Thomas DD (1999) A fluorescence energy transfer method for analysing protein oligomeric structure: application to phospholamban. Biophys J 76:2587–2599
Liu YS, Li L, Ni S, Winnik M (1993) Recovery of acceptor concentration distribution in direct energy transfer experiments. Chem Phys 177:579–589
London E (2005) How principles of domain formation in model membranes may explain ambiguities concerning lipid raft formation in cells. Biochim Biophys Acta 1746:203–220
Loura LMS, Prieto M (2000) Resonance energy transfer in heterogeneous planar and bilayer systems: theory and simulation. J Phys Chem B 104:6911–6919
Loura LMS, Fedorov A, Prieto M (1996) Resonance energy transfer in a model system of membranes: application to gel and liquid crystalline phases. Biophys J 71:1823–1836
Loura LMS, Fedorov A, Prieto M (2000a) Membrane probe distribution heterogeneity: a resonance energy transfer study. J Phys Chem B 104:6920–6931
Loura LMS, Fedorov A, Prieto M (2000b) Partition of membrane probes in a gel/fluid two-component lipid system: a fluorescence resonance energy transfer study. Biochim Biophys Acta 1467:101–112
Loura LMS, Fedorov A, Prieto M (2001a) Exclusion of a cholesterol analog from the cholesterol-rich phase in model membranes. Biochim Biophys Acta 1511:236–243
Loura LMS, Fedorov A, Prieto M (2001b) Fluid–fluid membrane microheterogeneity: a fluorescence resonance energy transfer study. Biophys J 80:776–788
Loura LMS, Coutinho A, Silva A, Fedorov A, Prieto M (2006) Structural effects of a basic peptide on the organization of dipalmitoylphosphatidylcholine/dipalmitoylphosphatidylserine membranes: a fluorescent resonance energy transfer study. J Phys Chem B 110:8130–8141
Mateo CR, Acuna AU, Brochon J-C (1995) Liquid-crystalline phases of cholesterol lipid bilayers as revealed by the fluorescence of trans-parinaric acid. Biophys J 68:978–987
Mesquita MMRS, Melo E, Thompson TE, Vaz WLC (2000) Partitioning of amphiphiles between coexisting ordered and disordered phases in two-phase lipid bilayer membranes. Biophys J 78:3019–3025
Morrow MR, Davis JH, Sharom FJ, Lamb MP (1986) Studies on the interaction of human erythrocyte band 3 with membrane lipids using deuterium nuclear magnetic resonance and differential scanning calorimetry. Biochim Biophys Acta 858:13–20
Mouritsen OG (2005) Life—as a matter of fat. The emerging science of lipidomics. Springer, Heidelberg
Mouritsen OG, Bloom M (1984) Mattress model of lipid–protein interactions in membranes. Biophys J 46:141–153
Niemelä PS, Hyvönen MT, Vattulainen I (2009) Atom-scale molecular interactions in lipid raft mixtures. Biochim Biophys Acta 1788:122–135
Owen DM, Neil MA, French PM, Magee AI (2007) Optical techniques for imaging membrane lipid microdomains in living cells. Semin Cell Dev Biol 18:591–598
Pandit SA, Jakobsson E, Scott HL (2004) Simulation of the early stages of nano-domain formation in mixed bilayers of sphingomyelin, cholesterol, and dioleylphosphatidylcholine. Biophys J 87:3312–3322
Pedersen S, Jørgensen K, Bækmark TR, Mouritsen OG (1996) Indirect evidence for lipid–domain formation in the transition region of phospholipid bilayers by two-probe fluorescence energy transfer. Biophys J 71:554–560
Pokorny A, Yandek LE, Elegbede AI, Hinderliter A, Almeida PFF (2006) Temperature and composition dependence of the interaction of δ-lysin with ternary mixtures of sphingomyelin/cholesterol/POPC. Biophys J 91:2184–2197
Putzel GG, Schick M (2008) Phenomenological model and phase behavior of saturated and unsaturated lipids and cholesterol. Biophys J 95:4756–4762
Rao M, Mayor S (2005) Use of Forster’s resonance energy transfer microscopy to study lipid rafts. Biochim Biophys Acta 1746:221–233
Redfern DA, Gericke A (2004) Domain formation in phosphatidylinositol monophosphate/phosphatidylcholine mixed vesicles. Biophys J 86:2980–2992
Redfern DA, Gericke A (2005) pH-dependent domain formation in phosphatidylinositol polyphosphate/phosphatidylcholine mixed vesicles. J Lipid Res 46:504–515
Ries J, Chiantia S, Schwille P (2009) Accurate determination of membrane dynamics with line-scan FCS. Biophys J 96:1999–2008
Santos NC, Prieto M, Castanho M (2003) Quantifying molecular partition into model systems of biomembranes. An emphasis on optical spectroscopic methods. Biochim Biophys Acta 1612:123–135
Scolari S, Engel S, Krebs N, Plazzo AP, De Almeida RF, Prieto M, Veit M, Herrmann A (2009) Lateral distribution of the transmembrane domain of influenza virus hemagglutinin revealed by time-resolved fluorescence imaging. J Biol Chem 284:15708–15716
Sergé A, Bertaux N, Rigneault H, Marguet D (2008) Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes. Nat Methods 5:671–672
Sharma P, Varma R, Sarasij RC, Ira, Gousset K, Krishnamoorthy G, Rao M, Mayor S (2004) Nanoscale organization of multiple GPI-anchored proteins in living cell membranes. Cell 116:577–589
Shimshick EJ, McConnel HM (1973) Lateral phase separation in phospholipid membranes. Biochemistry 12:2351–2360
Silva LC, de Almeida RFM, Castro BM, Fedorov A, Prieto M (2007) Ceramide-domain formation and collapse in lipid rafts: membrane reorganization by an apoptotic lipid. Biophys J 92:502–516
Silvius JR (2003) Fluorescence energy transfer reveals microdomain formation at physiological temperatures in lipid mixtures modeling the outer leaflet of the plasma membrane. Biophys J 85:1034–1045
Simons K, Vaz WL (2004) Model systems, lipid rafts, and cell membranes. Annu Rev Biophys Biomol Struct 33:269–295
Singer SJ, Nicholson GL (1972) The fluid mosaic model of the structure of cell membranes. Science 175:720–731
Smaby JM, Momsen MM, Brockman HL, Brown RE (1997) Phosphatidylcholine acyl unsaturation modulates the decrease in interfacial elasticity induced by cholesterol. Biophys J 73:1492–1505
Snyder B, Freire E (1982) Fluorescence energy transfer in two dimensions. A numeric solution for random and non-random distributions. Biophys J 40:137–148
Stilwell W, Jenski LJ, Zerouga M, Dumaual AC (2000) Detection of lipid domains in docosahexaenoic acid-rich bilayers by acyl chain-specific FRET probes. Chem Phys Lipids 104:113–132
Stryer L, Haugland RP (1967) Energy transfer: a spectroscopic ruler. Proc Natl Acad Sci USA 58:719–726
Takanishi CL, Bykova EA, Cheng W, Zheng J (2006) GFP-based FRET analysis in live cells. Brain Res 1091:132–139
Towles KB, Dan N (2007) Determination of membrane domain size by fluorescence resonance energy transfer: effects of domain polydispersity and packing. Langmuir 23:4737–4739
Towles KB, Brown AC, Wrenn SP, Dan N (2007) Effect of membrane microheterogeneity and domain size on fluorescence resonance energy transfer. Biophys J 93:655–667
Van Der Meer B, Coker V III, Chen S-YS (1994) Resonance energy transfer: theory and data. VCH Publishers, New York
Varma R, Mayor S (1998) GPI-anchored proteins are organized in submicron domains at the cell surface. Nature 394:798–801
Veatch SL, Keller SL (2002) Organization in lipid membranes containing cholesterol. Phys Rev Lett 89:268101
Veatch SL, Keller SL (2003) Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol. Biophys J 85:3074–3083
Veatch SL, Keller SL (2005) Seeing spots: complex phase behavior in simple membranes. Biochim Biophys Acta 1746:172–185
Veatch SL, Polozov IV, Gawrisch K, Keller SL (2004) Liquid domains in vesicles investigated by NMR and fluorescence microscopy. Biophys J 86:2910–2922
Veatch SL, Keller SL, Gawrisch K (2007) Critical fluctuations in domain-forming lipid mixtures. Proc Natl Acad Sci USA 104:17650–17655
Veiga AS, Santos NC, Loura LMS, Fedorov A, Castanho MA (2004) HIV fusion inhibitor peptide T-1249 is able to insert or adsorb to lipidic bilayers. Putative correlation with improved efficiency. J Am Chem Soc 126:14758–14763
Wolber PK, Hudson BS (1979) An analytical solution to the Förster energy transfer problem in two dimensions. Biophys J 28:197–210
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Financial support for this work was provided by Fundação para a Ciência e Tecnologia (Portugal).
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Loura, L.M.S., Fernandes, F. & Prieto, M. Membrane microheterogeneity: Förster resonance energy transfer characterization of lateral membrane domains. Eur Biophys J 39, 589–607 (2010). https://doi.org/10.1007/s00249-009-0547-5
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DOI: https://doi.org/10.1007/s00249-009-0547-5