A Brownian simulation model of glutamate synaptic diffusion in the femtosecond time scale

Abstract.

 To gain a better understanding of the elementary unit of synaptic communication between hippocampal neurons, we simulated the release of glutamate from a single pre-synaptic vesicle and its diffusion into the synaptic cleft. Diffusion of glutamate was simulated by a Brownian model based on Langevin equations. The model was implemented for parallel computer simulation and tested under different conditions of glutamate release and different geometrical and physical characteristics of the synaptic cleft. All the tested parameters have shown to be important for the synaptic responses. The results show that the synaptic transmission efficacy is influenced by many different geometrical parameters and, as a consequence, the quality of the excitatory post-synaptic response can be very different in the same synapse. The variability in the quantal response found by several authors can also be explained by physical parameters other than by variations in the quantal content of the synaptic vesicle as proposed by these authors.