Abstract
The influence of different sorption sites of isoreticular metal-organic frameworks (IRMOFs) on interactions with explosive molecules is investigated. Different connector effects are taken into account by choosing IRMOF-1(Be) (IRMOF-1 with Zn replaced by Be), and two high explosive molecules: 1,3,5-trinitro-s-triazine (RDX) and triacetone triperoxide (TATP). The key interaction features (structural, electronic and energetic) of selected contaminants were analyzed by means of density functional calculations. The interaction of RDX and TATP with different IRMOF-1(Be) fragments is studied. The results show that physisorption is favored and occurs due to hydrogen bonding, which involves the C-H groups of both molecules and the carbonyl oxygen atoms of IRMOF-1(Be). Additional stabilization of RDX and TATP arises from weak electrostatic interactions. Interaction with IRMOF-1(Be) fragments leads to polarization of the target molecules. Of the molecular configurations we have studied, the Be-O-C cluster connected with six benzene linkers (1,4-benzenedicarboxylate, BDC), possesses the highest binding energy for the studied explosives (-16.4 kcal mol-1 for RDX and -12.9 kcal mol-1 for TATP). The main difference was discovered to be in the preferable adsorption site for adsorbates (RDX above the small and TATP placed above the big cage). Based on these results, IRMOF-1 can be suggested as an effective material for storage and also for separation of similar explosives. Hydration destabilizes most of the studied adsorption systems by 1-3 kcal mol-1 but it leads to the same trend in the binding strength as found for the non-hydrated complexes.
Similar content being viewed by others
References
Hiyoshi RI, Nakamura J, Brill TB (2007) Propellants, explosives. Pyrotechnics 32:127–134
Kaye SM (ed) (1978) Encyclopedia of explosives and related items. PATR 2700 Vol. 8. U.S. Army Armament Research & Devlop. Comp: Dover, NJ, 203
Hon DNS (1985) Pulp & Paper Canada 1985, 86:129–131
Reutter DJ, Bender ED, Rudolph RL (1983) Proceed Int Symp Analysis & Detection of Explosives. U.S. Dept. Justice. FBI, Quantico, VA, p 149
Zitrin S, Kraus S, Glattstein B (1983) Proceed Int Symp Analysis & Detection of Explosives, US Dept. Justice. FBI, Quantico, VA, p 137
Swadley MJ, Li T (2007) J Chem Theor Comput 3:505–513
Chakraborty D, Muller RP, Dasgupta S, Goddard WA (2000) J Phys Chem A 104:2261–2272
Boyd S, Gravelle M, Politzer P (2006) J Chem Phys 124:104508–104517
Harris NJ, Lammertsma K (1997) J Am Chem Soc 119:6583–6589
Rice BM, Chabalowski CF (1997) J Phys Chem A 101:8720–8726
Chae HK, Siberio-Perez DY, Kim J, Go Y, Eddaoudi M, Matzger AJ, O’Keeffe M, Yaghi OM (2004) Nature 427:523–527
Eddaoudi M, Kim J, Rosi N, Vodak D, Wachter J, O’Keefe M, Yaghi OM (2002) Science 295:469–472
Huang L, Wang H, Chen J, Wang Z, Sun J, Zhao D, Yan Y (2003) Microporous Mesoporous Mater 58:105–114
Kepert CJ, Rosseinsky MJ (1999) J Chem Soc Chem Commun 4:375–376
Tafipolsky M, Amirjalayer S, Schmid R (2007) J Comput Chem 28:1169–1176
Mattesini M, Soler J, Yndurain F (2006) Phys Rev B 73:094111–094112
Li H, Eddaoudi M, O’Keeffe M, Yaghi OM (1999) Nature 402:276–279
Rosi NL, Eckert J, Eddaoudi M, Vodak DT, Kim J, O’Keeffe M, Yaghi OM (2003) Science 300:1127–1129
Yaghi OM, O’Keeffe M, Ockwig NW, Chae HK, Eddaoudi M, Kim J (2003) Nature 423:705–714
Fuentes-Cabrera M, Nicholson DM, Sumpter BG, Widom M (2005) J Chem Phys 123:124713–124715
Hausdorf S, Baitalow F, Bohle T, Rafaja D, Mertens FORL (2010) J Am Chem Soc 132:10978–10981
Sagara T, Klassen J, Ganz E (2004) J Chem Phys 121:12543–12547
Bordiga S, Vitillo JG, Ricchiardi G, Regli L, Cocina D, Zecchina A, Arstad B, Bjørgen M, Hafizovic J, Lillerud KP (2005) J Phys Chem B 109:18237–18242
Yang QY, Zhong CL (2005) J Phys Chem B 109:11862–11864
Belof JL, Stern AC, Eddaoudi M, Space B (2007) J Am Chem Soc 129:15202–15210
Han SS, Goddard WA III (2007) J Am Chem Soc 129:8422–8423
Rowsell JLC, Millward AR, Park KS, Yaghi OM (2004) J Am Chem Soc 126:5666–5667
Rowsell JLC, Eckert J, Yaghi OM (2005) J Am Chem Soc 127:14904–14910
Martín-Calvo A, García-Pérez E, Castillo CM, Calero S (2008) Phys Chem Chem Phys 10:7085–7091
Dubbeldam D, Frost H, Walton KS, Snurr RQ (2007) Fluid Phase Equilibria 261:152–161
Amirjalayer S, Schmid R (2009) Microporous Mesoporous Mater 125:90–96
Moellmer J, Celer EB, Luebke R, Cairns AJ, Staudt R, Eddaoudi M, Thommes M (2010) Microporous Mesoporous Mater 129:345–353
Wells BA, Liang Z, Marshall M, Chaffee AL (2009) Energ Proc 1:1273–1280
Pawsey S, Moudrakovski I, Ripmeester J, Wang LO, Exarhos GJ, Rowsell JLC, Yaghi OM (2007) J Phys Chem C 111:6060–6067
Xiong R, Fern JT, Keffer DJ, Fuentes-Cabrera MA, Nicholson DM (2009) Mol Simul 35:910–919
Odbadrakh K, Lewis JP, Nicholson DM, Petrova T, Michalkova A, Leszczynski J (2020) J Phys Chem C 114:3732–3736
Xiong R, Keffer DJ, Fuentes-Cabrera M, Nicholson DM, Michalkova A, Petrova T, Leszczynski T, Odbadrakh K, Doss BL, Lewis JP (2010) Langmuir 26:5942–5950
Xiong R, Odbadrakh K, Michalkova A, Luna JP, Petrova T, Keffer DJ, Nicholson DM, Fuentes-Cabrera MA, Lewis JP, Leszczynski J (2010) Sens Actuators B Chem 143:459–468
Odbadrakh K, Lewis JP, Nicholson DM (2010) J Phys Chem C 114:7535–7540
Dubnikova F, Kosloff R, Zeiri Y, Karpas Z (2002) J Phys Chem A 106:4951–4956
Munoz RAA, Lu D, Cagan A, Wang J (2007) Analyst 132:560–565
Schulte-Ladbeck R, Vogel M, Karst U (2006) Anal Bioanal Chem 386:559–565
Efremenko I, Zach R, Zeiri Y (2007) J Phys Chem C 111:11903–11911
Petrova T, Michalkova A, Leszczynski J (2009) Struct Chem 21:391–404
Burrows AD, Cassar K, Friend RMW, Mahon MF, Rigby SP, Warren JE (2005) Cryst Eng Comm 7:548–550
Schröck K, Schröder F, Heyden M, Fischer RA, Havenith M (2008) Phys Chem Chem Phys 10:4732–4739
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA Jr, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam NJ, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas Ö, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian 09, Revision A.1. Gaussian Inc. Wallingford, CT
Parr RG, Yang W (1989) Density-functional theory of atoms and molecules. Oxford Univ Press, Oxford
Grimme S (2006) J Comput Chem 27:1787–1799
Zhidomirov GM, Shubin AA, Milov MA, Kazansky VB, van Santen RA, Hensen EJM (2008) J Phys Chem C 112:3321–3326
Yuan S, Shi W, Li B, Wang J, Jiao H, Li YW (2005) J Phys Chem A 109:2594–2601
Castella-Ventura M, Akacem Y, Kassab E (2008) J Phys Chem C 112:19045–19054
Soscun H, Castellano O, Hernandez J (2004) J Phys Chem B 108:5620–5626
Pelmenschikov A, Leszczynski J (1999) J Phys Chem B 103:6886–6890
Gorb L, Lutchyn R, Zub Y, Leszczynska D, Leszczynski D (2006) Theochem 766:151–157
Gorb L, Gu J, Leszczynska D, Leszczynski J (2000) Phys Chem Chem Phys 2:5007–5012
Michalkova A, Szymczak JJ, Leszczynski J (2005) Struct Chem 16:325–337
Sauer J (1989) Chem Rev 89:199–255
Sauer J, Ugliengo P, Garrone E, Saunders VR (1994) Chem Rev 94:2095–2160
Boys SF, Bernardi F (1970) Mol Phys 19:553–566
Bader RWF (1990) Atoms in Molecules: A Quantum Theory. Oxford University Press, Oxford
Koch U, Popelier PLA (1995) J Phys Chem 99:9747–9754
Popelier PLA (1998) J Phys Chem A 102:1873–1878
Biegler-König F, Schönbohm J, Bayles D (2001) J Comput Chem 22:545–559
Muñoz-Caro C, Niño A, Sement ML, Leal JM, Ibeas S (2000) J Org Chem 65:405–410
Murray JS, Politzer P (2010) Wiley Interdisciplinary Reviews. Comput Mol Sci 1:153–163
Jiao H, PvR S (1994) J Chem Soc Faraday Trans 90:1559–1567
White JC, Hess CA (1993) J Phys Chem 97:6398–6404
Varetto U < MOLEKEL Version>; Swiss National Supercomputing Centre: Manno (Switzerland), http://wwwbioinformaticsorg/molekel/wiki/Main/HomePage
Blake NP, Weakliem PC, Metiu H (1998) J Phys Chem 102:67–74
Igarashi K, Tajiri K, Tanemura S, Nanbu R, Fukunaga T (1997) Z Phys D At Mol Clusters 40:562–565
Wozniak K, He H, Klinowski J, Jones W, Grech E (1994) J Phys Chem 98:13755–13765
Yang Q, Zhong C, Chen JF (2008) J Phys Chem C 112:1562–1569
Hafizovic J, Bjørgen M, Olsbye U, Dietzel PDC, Bordiga S, Prestipino C, Lamberti C, Lillerud KP (2007) J Am Chem Soc 129:3612–3620
Greathouse JA, Allendorf MD (2006) J Am Chem Soc 128:10678–10679
Novakovic SB, Bogdanovic GA, Fraisse B, Ghermani NE, Bouhmaida N (2007) Spasojevic-de Bire A. J Phys Chem A 111:13492–13505
Acknowledgments
This work was facilitated by the NSF grant EXP-LA no. 0730186. Work at ORNL was performed under the auspices of the Division of Materials Science and Engineering, Office of Basic Energy Science of the US Department of Energy. The use of trade, product, or firm names in this report is for descriptive purposes only and does not imply endorsement by the U.S. Government. The tests described and the resulting data presented herein, unless otherwise noted, were obtained from research conducted under the Environmental Quality Technology Program of the United States Army Corps of Engineers by the United States Army Engineer Research and Development Center (USAERDC). Permission was granted by the Chief of Engineers to publish this information. The findings of this report are not to be construed as an official Department of the Army position unless so designated by other authorized documents.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Scott, A.M., Petrova, T., Odbadrakh, K. et al. Molecular simulations of adsorption of RDX and TATP on IRMOF-1(Be). J Mol Model 18, 3363–3378 (2012). https://doi.org/10.1007/s00894-011-1338-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00894-011-1338-3