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Efficient statistical mapping of avian count data

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Abstract

We develop a spatial modeling framework for count data that is efficient to implement in high-dimensional prediction problems. We consider spectral parameterizations for the spatially varying mean of a Poisson model. The spectral parameterization of the spatial process is very computationally efficient, enabling effective estimation and prediction in large problems using Markov chain Monte Carlo techniques. We apply this model to creating avian relative abundance maps from North American Breeding Bird Survey (BBS) data. Variation in the ability of observers to count birds is modeled as spatially independent noise, resulting in over-dispersion relative to the Poisson assumption. This approach represents an improvement over existing approaches used for spatial modeling of BBS data which are either inefficient for continental scale modeling and prediction or fail to accommodate important distributional features of count data thus leading to inaccurate accounting of prediction uncertainty.

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References

  • J.O. Berger V. De Oliveira B. Sansó (2001) ArticleTitleObjective Bayesian analysis of spatially correlated data Journal of the American Statistical Association 96 1361–74 Occurrence Handle10.1198/016214501753382282

    Article  Google Scholar 

  • L.M. Berliner Z.-Q. Lu C. Snyder (1999) ArticleTitleStatistical design for adaptive weather observations Journal of the Atmospheric Sciences 56 2536–52 Occurrence Handle10.1175/1520-0469(1999)056<2536:SDFAWO>2.0.CO;2

    Article  Google Scholar 

  • Best, N.G., Waller, A., Thomas, A., Conlon, E.M., and Arnold, R.A. (1998) Bayesian models for spatially correlated disease and exposure data. in Bayesian Statistics 6, J.M. Bernardo, J.O. Berger, A.P. Dawid, and A.F.M. Smith (eds.), Oxford University Press, pp. 1–18.

  • J.M. Bueso J.M. Angulo F.J. Alonso (1998) ArticleTitleA state-space model approach to optimum spatial sampling design based on entropy Environmental and Ecological Statistics 5 29–44 Occurrence Handle10.1023/A:1009603318668

    Article  Google Scholar 

  • D.G. Clayton (1996) Generalized linear mixed models W.R. Gilks S. Richardson D.J. Spiegelhalter (Eds) Markov Chain Monte Carlo in Practice Chapman & Hall London 275–301

    Google Scholar 

  • D.D Cox L.H. Cox K.B. Ensor (1996) ArticleTitleSpatial sampling for the environment Environmental and Ecological Statistics 4 219–33 Occurrence Handle10.1023/A:1018578513217

    Article  Google Scholar 

  • N.A.C. Cressie (1991) Statistics for Spatial Data John Wiley & Sons New York

    Google Scholar 

  • C.R. Dietrich G.N. Newsam (1993) ArticleTitleA fast and exact method for multidimensional Gaussian stochastic simulations Water Resources Research 29 2861–69 Occurrence Handle10.1029/93WR01070

    Article  Google Scholar 

  • P.J. Diggle J.A. Tawn R.A. Moyeed (1998) ArticleTitleModel-based geostatistics (with discussion) Applied Statistics 47 299–350

    Google Scholar 

  • C.H. Flather J.R. Sauer (1996) ArticleTitleUsing landscape ecology to test hypotheses about large-scale abundance patterns in migratory birds Ecology 77 IssueID1 28–35

    Google Scholar 

  • M. Fuentes (2001) ArticleTitleA high frequency kriging approach Environmetrics 12 469–83 Occurrence Handle10.1002/env.473 Occurrence Handle1:CAS:528:DC%2BD3MXmt1Snsbw%3D

    Article  CAS  Google Scholar 

  • A. Gelman D.B. Rubin (1992) ArticleTitleInference from iterative simulation using multiple sequences Statistical Science 7 457–511

    Google Scholar 

  • A. Gelman J.B. Carlin H.S. Stern D.B. Rubin (1995) Bayesian Data Analysis Chapman & Hall London

    Google Scholar 

  • W.R. Gilks S. Richardson D.J. Spiegelhalter (1995) Markov Chain Monte Carlo in Practice Chapman & Hall London

    Google Scholar 

  • T.C. Haas (1992) ArticleTitleRedesigning continental-scale monitoring networks Atmospheric Environment 26 3323–33

    Google Scholar 

  • Z. He D. Sun (2000) ArticleTitleHierarchical Bayes estimation of hunting success rates with spatial correlations Biometrics 46 192–99

    Google Scholar 

  • D. Higdon (1998) ArticleTitleA process-convolution approach to modeling temperatures in the North Atlantic Ocean Journal of Environmental and Ecological Statistics 5 173–90 Occurrence Handle10.1023/A:1009666805688

    Article  Google Scholar 

  • W.A. Link J.R. Sauer (1997) ArticleTitleEstimation of population trajectories from count data Biometrics 53 63–72

    Google Scholar 

  • W.A. Link J.R. Sauer (1997) ArticleTitleNew Approaches to the Analysis of Population Trends in Land Birds: A comment on statistical methods Ecology 78 2632–34

    Google Scholar 

  • J.M. Mejia I. Rodriguez-Iturbe (1974) ArticleTitleOn the synthesis of random field sampling from the spectrum: An application to the generation of hydrological spatial processes Water Resources Research 10 705–11

    Google Scholar 

  • Nychka, D., Wikle, C.K., and Royle, J.A. (2002) Multiresolution Models for Nonstationary Spatial Covariance Functions. Statistical Modelling: In International Journal, 2, 315–331.

  • Nychka, D. and Saltzman, N. (1998) Design of air-quality monitoring networks, in Case Studies in Environmental Statistics, D. Nychka, W. Piegorsch, and L. Cox (eds.), New York in ‘‘Lecture Notes and Statistics’’, vol. 132, Springer, 196 pp.

  • C. Obled J.D. Creutin (1986) ArticleTitleSome developments in the use of empirical orthogonal functions for mapping meteorological fields Journal of Climate and Applied Meteorology 25 1189–204 Occurrence Handle10.1175/1520-0450(1986)025<1189:SDITUO>2.0.CO;2

    Article  Google Scholar 

  • G.W. Oehlert (1996) ArticleTitleShrinking a wet deposition network Atmospheric Environment 30 1347–57 Occurrence Handle10.1016/1352-2310(95)00333-9 Occurrence Handle1:CAS:528:DyaK28XhvVarsr4%3D

    Article  CAS  Google Scholar 

  • Robbins, C.S., Bystrak, D.A., and Geissler, P.H. (1986) The Breeding Bird Survey: its first fifteen years, 1965–1979. USDOI, Fish and Wildlife Service Resource Publication 157. Washington, D.C.

  • Royle J.A., Link W.A., and Sauer J.R. (2001) Statistical mapping of count survey data. in Predicting Species Occurrences Issues of Scale and Accuracy, Scott, J.M., Heglund, P.J., Morrison, M., Raphael, M., Haufler, J. and Wall, B. (eds.), Island Press, Covello CA.

  • J.R. Sauer B.G. Peterjohn W.A. Link (1994) ArticleTitleObserver differences in the North American Breeding Bird Survey Auk 111 50–62

    Google Scholar 

  • Sauer, J.R., Pendleton, G.W., and Orsillo, S. (1995) Mapping of bird distributions from point count surveys. in monitoring bird populations by point counts C.J. Ralph, J.R. Sauer and S. Droege, (eds.), USDA Forest Service, Pacific Southwest Research Station, General Technical Report PSW-GTR-149, pp. 151–60.

  • M. Shinozuka C.M. Jan (1972) ArticleTitleDigital simulation of random processes and its applications Journal of Sound Vibration 25 111–28 Occurrence Handle10.1016/0022-460X(72)90600-1

    Article  Google Scholar 

  • R.H. Shumway (1988) Applied Statistical Time Series Analysis Prentice-Hall New Jersey

    Google Scholar 

  • R.H. Shumway D.S. Stoffer (2000) Time Series Analysis and Its Applications Springer-Verlag New York

    Google Scholar 

  • M. Stein (1999) Interpolation of Spatial Data: Some Theory for Kriging Springer-Verlag New York

    Google Scholar 

  • M.A. Villard B.A. Maurer (1996) ArticleTitleGeostatistics as a tool for examining hypothesized declines in migratory songbirds Ecology 77 IssueID1 59–68

    Google Scholar 

  • C.K. Wikle N. Cressie (1999) ArticleTitleA dimension reduction approach to space-time Kalman filtering Biometrika 86 815–29 Occurrence Handle10.1093/biomet/86.4.815

    Article  Google Scholar 

  • C.K. Wikle R.F. Milliff D. Nychka L.M. Berliner (2001) ArticleTitleSpatiotemporal hierarchical Bayesian modeling: Tropical ocean surface winds Journal of the American Statistical Association 96 382–97 Occurrence Handle10.1198/016214501753168109 Occurrence HandleMR1939342

    Article  MathSciNet  Google Scholar 

  • Wikle, C.K. Royle, J.A. (2005) Dynamic design of ecological monitoring networks for non-Gaussian spatio-temporal data. Environmetrics (in press).

  • Yang, K., Carr, D.B., and O’Connor, R.J. (1995) Smoothing of Breeding Bird Survey data to produce national biodiversity estimates. Computing Science and Statistics: Proceeding of the 27th Symposium on the Interface, pp. 405–09.

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Correspondence to J. Andrew Royle.

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Royle, J.A., Wikle, C.K. Efficient statistical mapping of avian count data. Environ Ecol Stat 12, 225–243 (2005). https://doi.org/10.1007/s10651-005-1043-4

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