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A molecular marker-based assessment of sedimentary organic matter sources and distributions in Florida Bay

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Abstract

Seven surface sediment samples covering the general geographical area of Florida Bay were examined through the measurement of 13C isotopic abundance and lipid classes to assess the distributions and sources of organic matter (OM) in this estuarine environment. The bulk δ13Corg value shifted from a more isotopically depleted (−19.9‰) to a more isotopically enriched (−13.5‰) signal along the NE to SW transect. Two geochemical proxies (Paq and C25/C27 n-alkan–2-ones) indicative of seagrass-derived OM significantly increased from near-shore to offshore areas, while taraxerol, a biomarker for mangroves, substantially decreased from 7200 to 284 ng/g along that transect. A clear spatial variation of OM sources was observed in Florida Bay. Generally, the sites in the NE contained mixed OM sources of terrestrial (mangrove) and seagrass-derived OM, where the terrestrial component accounted for over 60% of the OM. In contrast, the sites in central and SW Florida Bay were strongly dominated by seagrass-derived OM. Other lipid fractions such as fatty acids, n-alcohols and sterols revealed an important contribution of algae and bacteria especially in the central and SW section of the Bay. Relatively abundant C25 HBIs suggest important marine diatom inputs, while the presence of C20 HBIs particularly in central Florida Bay possibly reflects the contribution of cyanobacterial mats. The molecular proxies developed in this study to assess OM sources in Florida Bay are promising tools for the characterization and seasonal variability assessment of OM in this and other similar subtropical and tropical estuaries and for paleoenvironmental studies.

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References

  • W. T. Anderson J. W. Fourqurean (2003) ArticleTitleIntra- and interannual variability in seagrass carbon and nitrogen stable isotopes from south Florida, a preliminary study Organic Geochemistry 34 185–194 Occurrence Handle10.1016/S0146-6380(02)00161-4 Occurrence Handle1:CAS:528:DC%2BD3sXks1CgsQ%3D%3D

    Article  CAS  Google Scholar 

  • S. T. Belt W. G. Allard G. Massé J.-M. Robert S. J. Rowland (2000) ArticleTitleHighly branched isoprenoids (HBIs): identification of the most common and abundant sedimentary isomers Geochimica et Cosmochimica Acta 64 3839–3851 Occurrence Handle10.1016/S0016-7037(00)00464-6 Occurrence Handle1:CAS:528:DC%2BD3cXnvVantbg%3D

    Article  CAS  Google Scholar 

  • D. Birgel R. Stein J. Hefter (2004) ArticleTitleAliphatic lipids in recent sediments of the Fram Strait/Yermak Plateau (Arctic Ocean): composition, sources and transport processes Marine Chemistry 88 127–160 Occurrence Handle10.1016/j.marchem.2004.03.006 Occurrence Handle1:CAS:528:DC%2BD2cXksFKgsbg%3D

    Article  CAS  Google Scholar 

  • J. N. Boyer J. W. Fourqurean R. D. Jones (1997) ArticleTitleSpatial trends in water chemistry of Florida Bay and Whitewater Bay: zones of similar influence Estuaries 20 743–758 Occurrence Handle10.2307/1352248 Occurrence Handle1:CAS:528:DyaK1cXjtVSmuw%3D%3D

    Article  CAS  Google Scholar 

  • J. N. Boyer S. K. Dailey P. J. Gibson M. T. Rogers D. Mir-Gonzalez (2006) ArticleTitleThe role of dissolved organic matter bioavailability in promoting phytoplankton blooms in Florida Bay Hydrobiologia 569 71–85 Occurrence Handle1:CAS:528:DC%2BD28XnsFyjtbs%3D

    CAS  Google Scholar 

  • S. M. Budge C. C. Parrish (1998) ArticleTitleLipid biogeochemistry of plankton, settling matter and sediments in Trinity Bay, Newfoundland. II. Fatty acids Organic Geochemistry 29 1547–1559 Occurrence Handle10.1016/S0146-6380(98)00177-6 Occurrence Handle1:CAS:528:DyaK1MXpvVajsw%3D%3D

    Article  CAS  Google Scholar 

  • P. A. Cranwell (1973) ArticleTitleChain-length distribution of n-alkanes from lake sediments in relation to post-glacial environmental change Freshwater Biology 3 259–265 Occurrence Handle10.1111/j.1365-2427.1973.tb00921.x

    Article  Google Scholar 

  • P. A. Cranwell (1982) ArticleTitleLipids of aquatic sediments and sedimenting particulates Progress in Lipid Research 21 271–308 Occurrence Handle6763223 Occurrence Handle10.1016/0163-7827(82)90012-1 Occurrence Handle1:CAS:528:DyaL3sXktFSgu7o%3D

    Article  PubMed  CAS  Google Scholar 

  • P. A. Cranwell G. Eglinton N. Robinson (1987) ArticleTitleLipids of aquatic organisms as potential contributors to lacustrine sediment – II Organic Geochemistry 11 513–527 Occurrence Handle10.1016/0146-6380(87)90007-6 Occurrence Handle1:CAS:528:DyaL1cXhtFynsL4%3D

    Article  CAS  Google Scholar 

  • G. Eglinton R. J. Hamilton (1967) ArticleTitleLeaf epicuticular waxes Science 156 1322–1335 Occurrence Handle4975474 Occurrence Handle1:CAS:528:DyaF2sXks1Wmtbo%3D

    PubMed  CAS  Google Scholar 

  • M. B. Fernandes M.-A. Sicre (2000) ArticleTitleThe importance of terrestrial organic carbon inputs on Kara Sea shelves as revealed by n-alkanes, OC and δ13C values Organic Geochemistry 31 363–374 Occurrence Handle10.1016/S0146-6380(00)00006-1 Occurrence Handle1:CAS:528:DC%2BD3cXktFart7o%3D

    Article  CAS  Google Scholar 

  • K. J. Ficken B. Li D. L. Swain G. Eglinton (2000) ArticleTitleAn n-alkane proxy for the sedimentary input of submerged/floating freshwater aquatic macrophytes Organic Geochemistry 31 745–749 Occurrence Handle10.1016/S0146-6380(00)00081-4 Occurrence Handle1:CAS:528:DC%2BD3cXmsFSqu7k%3D

    Article  CAS  Google Scholar 

  • M. Fleming G. Lin L. da-Silveria L. Steinberg (1990) ArticleTitleInfluence of mangrove detritus in an estuarine ecosystem Bulletin of Marine Science 47 663–669

    Google Scholar 

  • J. W. Fourqurean M. B. Robbins (1999) ArticleTitleFlorida Bay: a history of recent ecological changes Estuaries 22 345–357 Occurrence Handle10.2307/1353203 Occurrence Handle1:CAS:528:DyaK1MXmsVOmsbY%3D

    Article  CAS  Google Scholar 

  • M. O. Hall M. J. Durako J. W. Fourqurean J. C. Zieman (1999) ArticleTitleDecadal changes in seagrass distribution and abundance in Florida Bay Estuaries 22 445–459 Occurrence Handle10.2307/1353210

    Article  Google Scholar 

  • M. E. Hernandez R. Mead M. C. Peralba R. Jaffé (2001) ArticleTitleOrigin and transport of n-alkane-2-ones in a subtropical estuary: potential biomarkers for seagrass-derived organic matter Organic Geochemistry 32 21–32 Occurrence Handle10.1016/S0146-6380(00)00157-1 Occurrence Handle1:CAS:528:DC%2BD3MXhsFyns7c%3D

    Article  CAS  Google Scholar 

  • W.-Y. Huang W. G. Meinschein (1978) ArticleTitleSterols in sediments from Baffin Bay, Texas Geochimica et Cosmochimica Acta 42 1391–1396 Occurrence Handle10.1016/0016-7037(78)90044-3 Occurrence Handle1:CAS:528:DyaE1MXht1Crtrw%3D

    Article  CAS  Google Scholar 

  • W.-Y. Huang W. G. Meinschein (1979) ArticleTitleSterols as ecological indicators Geochimica et Cosmochimica Acta 43 739–745 Occurrence Handle10.1016/0016-7037(79)90257-6 Occurrence Handle1:CAS:528:DyaE1MXlvFems70%3D

    Article  CAS  Google Scholar 

  • Jaffé, R., A. Cabrera, K. Hausmann & H. Carvajal, 1993. On the origin and fate of n-alkan-2-ones in freshwater environments. Organic Geochemistry: Applications in Energy and the Natural Environment, pp. 356–359.

  • R. Jaffé R. Mead M. E. Hernandez M. C. Peralba O. A. DiGuida (2001) ArticleTitleOrigin and transport of sedimentary organic matter in two subtropical estuaries: a comparative, biomarker-based study Organic Geochemistry 32 507–526 Occurrence Handle10.1016/S0146-6380(00)00192-3

    Article  Google Scholar 

  • R. Jaffé G. A. Wolff A. Cabrera H. Carvajal Chitty (1995) ArticleTitleThe biogeochemistry of lipids in rivers of the Orinoco Basin Geochimica et Cosmochimica Acta 59 4507–4522 Occurrence Handle10.1016/0016-7037(95)00246-V

    Article  Google Scholar 

  • F. Kenig J. S. S. Damsté N. L. Frewin J. M. Hayes J. W. Leeuw ParticleDe (1995) ArticleTitleMolecular indicators for palaeoenvironmental change in a Messinian evaporitic sequence (Vena del Gesso, Italy). II: high-resolution variations in abundances and 13C contents of free and sulphur-bound carbon skeletons in a single marl bed Organic Geochemistry 23 485–526 Occurrence Handle11539140 Occurrence Handle10.1016/0146-6380(95)00049-K Occurrence Handle1:CAS:528:DyaK2MXot1Wgtbg%3D

    Article  PubMed  CAS  Google Scholar 

  • S. D. Killops N. L. Frewin (1994) ArticleTitleTriterpenoid diagenesis and cuticular preservation Organic Geochemistry 21 1193–1209 Occurrence Handle10.1016/0146-6380(94)90163-5 Occurrence Handle1:CAS:528:DyaK2MXht1Ohsrc%3D

    Article  CAS  Google Scholar 

  • R. Mead Y. Xu J. Chong R. Jaffé (2005) ArticleTitleSediment and soil organic matter source assessment as revealed by the molecular distribution and carbon isotopic composition of n-alkanes Organic Geochemistry 36 363–370 Occurrence Handle10.1016/j.orggeochem.2004.10.003 Occurrence Handle1:CAS:528:DC%2BD2MXhtFejur4%3D

    Article  CAS  Google Scholar 

  • P. A. Meyers (2003) ArticleTitleApplications of organic geochemistry to paleolimnological reconstructions: a summary of examples from the Laurentian Great Lakes Organic Geochemistry 34 261–289 Occurrence Handle10.1016/S0146-6380(02)00168-7 Occurrence Handle1:CAS:528:DC%2BD3sXks1Cnug%3D%3D

    Article  CAS  Google Scholar 

  • P. A. Meyers B. J. Eadie (1993) ArticleTitleSources, degradation and recycling of organic matter associated with sinking particles in Lake Michigan Organic Geochemistry 20 47–56 Occurrence Handle10.1016/0146-6380(93)90080-U Occurrence Handle1:CAS:528:DyaK3sXitF2iurs%3D

    Article  CAS  Google Scholar 

  • S. M. Mudge J. A. East M. J. Bebianno L. A. Barreira (1998) ArticleTitleFatty acids in the Ria Formosa Lagoon, Portugal Organic Geochemistry 29 963–977 Occurrence Handle10.1016/S0146-6380(98)00049-7 Occurrence Handle1:CAS:528:DyaK1MXkvFyjuw%3D%3D

    Article  CAS  Google Scholar 

  • R. Neto R.N. Mead W.J. Louda R. Jaffé (2006) ArticleTitleOrganic biogeochemistry of detrital flocculent material (floc) in a subtropical, coastal wetland Biogeochemistry 77 284–304 Occurrence Handle10.1007/s10533-005-5042-1 Occurrence Handle1:CAS:528:DC%2BD28XhvVejsrs%3D

    Article  CAS  Google Scholar 

  • G. J. Perry J. K. Volkman R. B. Johns H. J. Bavor (1979) ArticleTitleFatty acids of bacterial origin in contemporary marine sediments Geochimica et Cosmochimica Acta 43 1715–1725 Occurrence Handle10.1016/0016-7037(79)90020-6 Occurrence Handle1:CAS:528:DyaL3cXhs1KktLo%3D

    Article  CAS  Google Scholar 

  • E. Phlips S. Badylak (1996) ArticleTitleSpatial variability in phytoplankton standing crop and composition in a shallow inner-shelf lagoon, Florida Bay, Florida Bulletin of Marine Science 58 203–216

    Google Scholar 

  • E. J. Phlips S. Badylak T. C. Lynch (1999) ArticleTitleBlooms of the picoplanktonic cyanobacterium Synechococcus in Florida Bay, a subtropical inner-shelf lagoon Limnology and Oceanography 44 1166–1175 Occurrence Handle10.4319/lo.1999.44.4.1166

    Article  Google Scholar 

  • F. G. Prahl J. R. Ertel M. A. Goñi M. A. Sparrow B. Eversmeyer (1994) ArticleTitleTerrestrial organic carbon contributions to sediments on the Washington margin Geochimica et␣Cosmochimica Acta 58 3035–3048 Occurrence Handle10.1016/0016-7037(94)90177-5 Occurrence Handle1:CAS:528:DyaK2cXltlOru7w%3D

    Article  CAS  Google Scholar 

  • G. Rieley R. J. Collier D. M. Jones G. Eglinton (1991) ArticleTitleThe biogeochemistry of Ellesmere Lake, U.K. – I: source correlation of leaf wax inputs to the sedimentary lipid record Organic Geochemistry 17 901–912 Occurrence Handle10.1016/0146-6380(91)90031-E Occurrence Handle1:CAS:528:DyaK38XhsFGlu78%3D

    Article  CAS  Google Scholar 

  • N. Robinson P. A. Cranwell B. J. Finlay G. Eglinton (1984) ArticleTitleLipids of aquatic organisms as potential contributors to lacustrine sediments Organic Geochemistry 6 143–152 Occurrence Handle10.1016/0146-6380(84)90035-4 Occurrence Handle1:CAS:528:DyaL2MXlsVGju7s%3D

    Article  CAS  Google Scholar 

  • S. J. Rowland J. N. Robson (1990) ArticleTitleThe widespread occurrence of highly branched acyclic C20, C25 and C30 hydrocarbons in recent sediments and biota – a review Marine Environmental Research 30 191–216 Occurrence Handle10.1016/0141-1136(90)90019-K Occurrence Handle1:CAS:528:DyaK3MXktFCrtLc%3D

    Article  CAS  Google Scholar 

  • V. Santos D. S. M. Billett A. L. Rice G. A. Wolff (1994) ArticleTitleThe fate of organic matter in deep sea sediments from the Porcupine Abyssal Plain I. Lipids. Deep Sea Research 41 787–819 Occurrence Handle10.1016/0967-0637(94)90077-9 Occurrence Handle1:CAS:528:DyaK2cXntVOks74%3D

    Article  CAS  Google Scholar 

  • J. E. Silliman C. L. Schelske (2003) ArticleTitleSaturated hydrocarbons in the sediments of Lake Apopka, Florida Organic Geochemistry 34 253–260 Occurrence Handle10.1016/S0146-6380(02)00169-9 Occurrence Handle1:CAS:528:DC%2BD3sXks1Cmsg%3D%3D

    Article  CAS  Google Scholar 

  • J. S. Sinninghe Damsté G. Muyzer B. Abbas S. W. Rampen G. Massé W. G. Allard S. T. Belt J.-M. Robert S. J. Rowland J. M. Moldowan S. M. Barbanti F. J. Fago P. Denisevich J. Dahl L. A. F. Trinidade S. Schouten (2004) ArticleTitleThe rise of rhizosolenid diatoms Science 304 584–587 Occurrence Handle10.1126/science.1096806 Occurrence Handle1:CAS:528:DC%2BD2cXjt1Crsr4%3D

    Article  CAS  Google Scholar 

  • H. L. ten Haven T. M. Peakman J. Rullkotter (1992a) ArticleTitleΔ2-Triterpenes: early intermediates in the diagenesis of terrigenous triterpenoids Geochimica et Cosmochimica Acta 56 1993–2000 Occurrence Handle10.1016/0016-7037(92)90325-D Occurrence Handle1:CAS:528:DyaK38XlsFCktLY%3D

    Article  CAS  Google Scholar 

  • H. L. ten Haven T. M. Peakman J. Rullkotter (1992b) ArticleTitleEarly diagenetic transformation of higher-plant triterpenoids in␣deep-sea sediments from Baffin Bay Geochimica et Cosmochimica Acta 56 2001–2024 Occurrence Handle10.1016/0016-7037(92)90326-E Occurrence Handle1:CAS:528:DyaK38XltFGgur8%3D

    Article  CAS  Google Scholar 

  • H. L. ten Haven J. Rullkotter (1988) ArticleTitleThe diagenetic fate of taraxer-14-ene and oleanene isomers Geochimica et Cosmochimica Acta 52 2543–2548 Occurrence Handle10.1016/0016-7037(88)90312-2 Occurrence Handle1:CAS:528:DyaL1MXpvVaqtA%3D%3D

    Article  CAS  Google Scholar 

  • J. M. Trendel F. Lohmann J. P. Kintzinger P. Albrecht A. Chiarone C. Riche M. Cesario J. Guilhem C. Pascard (1989) ArticleTitleIdentification of des-A-triterpenoid hydrocarbons occurring in surface sediments Tetrahedron 45 4457–4470 Occurrence Handle10.1016/S0040-4020(01)89081-5 Occurrence Handle1:CAS:528:DyaL1MXmtFKrsLY%3D

    Article  CAS  Google Scholar 

  • G. J. M. Versteegh E. Schefuβ L. Dupont F. Marret J. S. Sinninghe Damsté J. H. F. Jansen (2004) ArticleTitleTaraxerol and Rhizophora pollen as proxies for tracking past mangrove ecosystems 1 Geochimica et Cosmochimica Acta 68 411–422 Occurrence Handle10.1016/S0016-7037(03)00456-3 Occurrence Handle1:CAS:528:DC%2BD2cXkt12mug%3D%3D

    Article  CAS  Google Scholar 

  • J. K. Volkman (1986) ArticleTitleA review of sterol markers for marine and terrigenous organic matter Organic Geochemistry 9 83–99 Occurrence Handle10.1016/0146-6380(86)90089-6 Occurrence Handle1:CAS:528:DyaL28XitFalu7c%3D

    Article  CAS  Google Scholar 

  • J. K. Volkman S. M. Barrett S. I. Blackburn (1999) ArticleTitleEustigmatophyte microalgae are potential sources of C29 sterols, C22–C28 n-alcohols and C28–C32 n-alkyl diols in freshwater environments Organic Geochemistry 30 307–318 Occurrence Handle10.1016/S0146-6380(99)00009-1 Occurrence Handle1:CAS:528:DyaK1MXjs12nu7w%3D

    Article  CAS  Google Scholar 

  • J. K. Volkman S. M. Barrett S. I. Blackburn M. P. Mansour E. L. Sikes F. Gelin (1998) ArticleTitleMicroalgal biomarkers: a review of recent research developments Organic Geochemistry 29 1163–1179 Occurrence Handle10.1016/S0146-6380(98)00062-X Occurrence Handle1:CAS:528:DyaK1MXpslyrtg%3D%3D

    Article  CAS  Google Scholar 

  • J. K. Volkman S. M. Barrett G. A. Dunstan (1994) ArticleTitleC25 and C30 highly branched isoprenoid alkenes in laboratory cultures of two marine diatoms Organic Geochemistry 21 407–414 Occurrence Handle10.1016/0146-6380(94)90202-X Occurrence Handle1:CAS:528:DyaK2cXmsFSksbk%3D

    Article  CAS  Google Scholar 

  • J. K. Volkman R. B. Johns F. T. Gillan G. J. Perry H. J. Bavor (1980) ArticleTitleMicrobial lipids of an intertidal sediment – I. Fatty acids and hydrocarbons Geochimica et Cosmochimica Acta 44 1133–1143 Occurrence Handle10.1016/0016-7037(80)90067-8 Occurrence Handle1:CAS:528:DyaL3cXmtVOrtL4%3D

    Article  CAS  Google Scholar 

  • J. C. Zieman J. W. Fourqurean R. L. Iverson (1989) ArticleTitleDistribution, abundance and productivity of seagrasses and macroalgae in Florida Bay Bulletin of Marine Science 44 292–311

    Google Scholar 

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Xu, Y., Mead, R.N. & Jaffé, R. A molecular marker-based assessment of sedimentary organic matter sources and distributions in Florida Bay. Hydrobiologia 569, 179–192 (2006). https://doi.org/10.1007/s10750-006-0131-2

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