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Erschienen in: Natural Computing 3/2012

01.09.2012

Comparing simulation algorithms for multienvironment probabilistic P systems over a standard virtual ecosystem

verfasst von: M. Angels Colomer, Ignacio Pérez-Hurtado, Mario J. Pérez-Jiménez, Agustín Riscos-Núñez

Erschienen in: Natural Computing | Ausgabe 3/2012

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Abstract

Membrane Computing has recently proved to be a suitable framework for addressing the modelling of dynamical biological systems in general, and ecosystems in particular. Due to the inherent randomness and uncertainty in biological systems, when designing a model the relevant tasks to be addressed are the validation and virtual experimentation processes, rather than the formal verification. It is therefore crucial to rely on software implementations of efficient simulation algorithms. This paper presents a simple (but realistic enough) ecosystem where a carnivore and several herbivorous species interact. The model of this ecosystem has been used to compare experimentally the performance of two different simulation algorithms.

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Literatur
Zurück zum Zitat Besozzi D, Cazzaniga P, Pescini D, Mauri G (2008) Modelling metapopulations with stochastic membrane systems. BioSystems 91(3):499–514CrossRef Besozzi D, Cazzaniga P, Pescini D, Mauri G (2008) Modelling metapopulations with stochastic membrane systems. BioSystems 91(3):499–514CrossRef
Zurück zum Zitat Cardona M, Colomer MA, Pérez-Hurtado I, Pérez-Jiménez MJ, Sanuy D, Margalida A (2010) A P system based model of an ecosystem of some scavenger birds. In: Membrane computing. 10th international workshop, WMC 2009. Lecture notes in computer science, vol 5957, pp 182–195 Cardona M, Colomer MA, Pérez-Hurtado I, Pérez-Jiménez MJ, Sanuy D, Margalida A (2010) A P system based model of an ecosystem of some scavenger birds. In: Membrane computing. 10th international workshop, WMC 2009. Lecture notes in computer science, vol 5957, pp 182–195
Zurück zum Zitat Cardona M, Colomer MA, Margalida A, Palau A, Pérez-Hurtado I, Pérez-Jiménez MJ, Sanuy D (2011) A computational modeling for real ecosystems based on P systems. Nat Comput. doi:10.1007/s11047-010-9191-3 Cardona M, Colomer MA, Margalida A, Palau A, Pérez-Hurtado I, Pérez-Jiménez MJ, Sanuy D (2011) A computational modeling for real ecosystems based on P systems. Nat Comput. doi:10.​1007/​s11047-010-9191-3
Zurück zum Zitat García-Quismondo M, Gutiérrez-Escudero R, Pérez-Hurtado I, Pérez-Jiménez MJ, Riscos-Núñez A (2010) An overview of P-Lingua 2.0. In: Membrane computing. 10th international workshop, WMC 2009. Lecture notes in computer science, vol 5957, pp 264–288 García-Quismondo M, Gutiérrez-Escudero R, Pérez-Hurtado I, Pérez-Jiménez MJ, Riscos-Núñez A (2010) An overview of P-Lingua 2.0. In: Membrane computing. 10th international workshop, WMC 2009. Lecture notes in computer science, vol 5957, pp 264–288
Zurück zum Zitat Martínez MA, Pérez-Hurtado I, Pérez-Jiménez MJ, Riscos-Núñez A, Colomer MA (2010) A new simulation algorithm for multienvironment probabilistic P systems. In: Li K, Tang Z, Li R, Nagar AK, Thamburaj R (eds) Proceedings 2010 IEEE fifth international conference on Bio-inpired Computing: Theories and Applications (BIC-TA 2010), vol 1. IEEE Press, Changsha, China, 23-26 September 2010, pp 59–68 Martínez MA, Pérez-Hurtado I, Pérez-Jiménez MJ, Riscos-Núñez A, Colomer MA (2010) A new simulation algorithm for multienvironment probabilistic P systems. In: Li K, Tang Z, Li R, Nagar AK, Thamburaj R (eds) Proceedings 2010 IEEE fifth international conference on Bio-inpired Computing: Theories and Applications (BIC-TA 2010), vol 1. IEEE Press, Changsha, China, 23-26 September 2010, pp 59–68
Zurück zum Zitat Nguyen V, Kearney D, Gioiosa G (2009) An algorithm for non-deterministic object distribution in P systems and its implementation in hardware. In: Membrane computing. 9th international workshop, WMC 2008. Lecture notes in computer science, vol 5391, pp 325–354 Nguyen V, Kearney D, Gioiosa G (2009) An algorithm for non-deterministic object distribution in P systems and its implementation in hardware. In: Membrane computing. 9th international workshop, WMC 2008. Lecture notes in computer science, vol 5391, pp 325–354
Zurück zum Zitat Păun Gh, Rozenberg G, Salomaa A (eds) (2010) The Oxford handbook of membrane computing. Oxford University Press, OxfordMATH Păun Gh, Rozenberg G, Salomaa A (eds) (2010) The Oxford handbook of membrane computing. Oxford University Press, OxfordMATH
Zurück zum Zitat Pérez-Jiménez MJ, Romero FJ (2006) P systems, a new computational modelling tool for systems biology. In: Transactions on computational systems biology VI. Lecture notes in bioinformatics, vol 4220, pp 176–197 Pérez-Jiménez MJ, Romero FJ (2006) P systems, a new computational modelling tool for systems biology. In: Transactions on computational systems biology VI. Lecture notes in bioinformatics, vol 4220, pp 176–197
Zurück zum Zitat Romero FJ, Pérez-Jiménez MJ (2008) Modelling gene expression control using P systems: the Lac Operon, a case study. BioSystems 91(3):438–457CrossRef Romero FJ, Pérez-Jiménez MJ (2008) Modelling gene expression control using P systems: the Lac Operon, a case study. BioSystems 91(3):438–457CrossRef
Zurück zum Zitat Pérez-Hurtado I, Valencia L, Pérez-Jiménez MJ, Colomer MA, Riscos-Núñez A (2010) MeCoSim: a general purpose software tool for simulating biological phenomena by means of P Systems. In: Li K, Tang Z, Li R, Nagar AK, Thamburaj R (eds) Proceedings 2010 IEEE fifth international conference on Bio-inpired Computing: Theories and Applications (BIC-TA 2010), vol 1. IEEE Press, Changsha, China, 23–26 September 2010, pp 637–643 Pérez-Hurtado I, Valencia L, Pérez-Jiménez MJ, Colomer MA, Riscos-Núñez A (2010) MeCoSim: a general purpose software tool for simulating biological phenomena by means of P Systems. In: Li K, Tang Z, Li R, Nagar AK, Thamburaj R (eds) Proceedings 2010 IEEE fifth international conference on Bio-inpired Computing: Theories and Applications (BIC-TA 2010), vol 1. IEEE Press, Changsha, China, 23–26 September 2010, pp 637–643
Metadaten
Titel
Comparing simulation algorithms for multienvironment probabilistic P systems over a standard virtual ecosystem
verfasst von
M. Angels Colomer
Ignacio Pérez-Hurtado
Mario J. Pérez-Jiménez
Agustín Riscos-Núñez
Publikationsdatum
01.09.2012
Verlag
Springer Netherlands
Erschienen in
Natural Computing / Ausgabe 3/2012
Print ISSN: 1567-7818
Elektronische ISSN: 1572-9796
DOI
https://doi.org/10.1007/s11047-011-9289-2

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