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Erschienen in: Medical & Biological Engineering & Computing 9/2006

01.09.2006 | Original Article

Neural network-based diagnostic and prognostic estimations in breast cancer microscopic instances

verfasst von: Ioannis Anagnostopoulos, Ilias Maglogiannis

Erschienen in: Medical & Biological Engineering & Computing | Ausgabe 9/2006

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Abstract

This paper deals with breast cancer diagnostic and prognostic estimations employing neural networks over the Wisconsin Breast Cancer datasets, which consist of measurements taken from breast cancer microscopic instances. A probabilistic approach is dedicated to solve the diagnosis problem, detecting malignancy among instances derived from the Fine Needle Aspirate test, while regression algorithms estimate the time interval that possibly correspond to the right end-point of the patients’ disease-free survival time or the time where the tumour recurs (time-to-recur). For the diagnosis problem, the accuracy of the neural network in terms of sensitivity and specificity was measured at 98.6 and 97.5% respectively, using the leave-one-out test method. As far as the prognosis problem is concerned, the accuracy of the neural network was measured through a stratified tenfold cross-validation approach. Sensitivity ranged between 80.5 and 91.8%, while specificity ranged between 91.9 and 97.9%, depending on the tested fold and the partition of the predicted period. The prognostic recurrence predictions were then further evaluated using survival analysis and compared with other techniques found in literature.

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Literatur
1.
Zurück zum Zitat Abbass HA (2002) An evolutionary artificial neural networks approach for breast cancer diagnosis. Artif Intell Med 25(3):265–281CrossRef Abbass HA (2002) An evolutionary artificial neural networks approach for breast cancer diagnosis. Artif Intell Med 25(3):265–281CrossRef
2.
Zurück zum Zitat Abbass HA, Towsey M, Finn GD (2001) C-net, a method for generating non-deterministic and dynamic multivariate decision trees. Knowl Inf Syst 3:184–197MATHCrossRef Abbass HA, Towsey M, Finn GD (2001) C-net, a method for generating non-deterministic and dynamic multivariate decision trees. Knowl Inf Syst 3:184–197MATHCrossRef
3.
Zurück zum Zitat Adamczak R, Duch W (1997) New developments in the feature space mapping model. In: 3rd Conference on neural networks and their applications, October 14–18 Adamczak R, Duch W (1997) New developments in the feature space mapping model. In: 3rd Conference on neural networks and their applications, October 14–18
4.
Zurück zum Zitat Bennett KP, Blue J (1997) A support vector machine approach to decision trees. In: R.P.I Math Report No. 97–100. Rensselaer Polytechnic Institute, Troy Bennett KP, Blue J (1997) A support vector machine approach to decision trees. In: R.P.I Math Report No. 97–100. Rensselaer Polytechnic Institute, Troy
5.
Zurück zum Zitat Burke HB, Goodman PH (1997) Artificial neural networks improve the accuracy of cancer survival prediction. Cancer 79:857–862CrossRef Burke HB, Goodman PH (1997) Artificial neural networks improve the accuracy of cancer survival prediction. Cancer 79:857–862CrossRef
6.
Zurück zum Zitat Chen D, Chang RF, Huang YL (2000) Breast cancer diagnosis using self-organizing map for sonography. Ultrasound Med Biol 26:405–11CrossRef Chen D, Chang RF, Huang YL (2000) Breast cancer diagnosis using self-organizing map for sonography. Ultrasound Med Biol 26:405–11CrossRef
7.
Zurück zum Zitat Cheng HD, Lui YM, Freimanis RI (1998) IEEE Trans Med Imaging 17(3):442–450 Cheng HD, Lui YM, Freimanis RI (1998) IEEE Trans Med Imaging 17(3):442–450
8.
Zurück zum Zitat Choong PL, deSilva CJS (1996) Entropy maximization networks: an application to breast cancer prognosis. IEEE Trans Neural Netw 7(3):568–577CrossRef Choong PL, deSilva CJS (1996) Entropy maximization networks: an application to breast cancer prognosis. IEEE Trans Neural Netw 7(3):568–577CrossRef
9.
Zurück zum Zitat Choong PL, deSilva CJS (1998) Maximum entropy estimation vs. multivariate logistic regression: which should be used for the analysis of small binary outcome data sets? In: Proceedings of the 20th annual international conference of the IEEE Engineering in Medicine and Biology Society, vol 3, pp 1602–1605 Choong PL, deSilva CJS (1998) Maximum entropy estimation vs. multivariate logistic regression: which should be used for the analysis of small binary outcome data sets? In: Proceedings of the 20th annual international conference of the IEEE Engineering in Medicine and Biology Society, vol 3, pp 1602–1605
10.
Zurück zum Zitat Duch W, Adamczak R, Grabczewski K (2000) A new methodology of extraction, optimization and application of crisp and fuzzy logical rules. IEEE Trans Neural Netw 11(2):1–31 Duch W, Adamczak R, Grabczewski K (2000) A new methodology of extraction, optimization and application of crisp and fuzzy logical rules. IEEE Trans Neural Netw 11(2):1–31
11.
Zurück zum Zitat Emmanouilidis C, Hunter A, MacIntyre J, Cox C (1999) Multiple-criteria genetic algorithms for feature selection in neurofuzzy modelling. In: Proceedings of the IEEE international joint conference on neural networks (IJCNN’99), Washington, pp 4387–4392 Emmanouilidis C, Hunter A, MacIntyre J, Cox C (1999) Multiple-criteria genetic algorithms for feature selection in neurofuzzy modelling. In: Proceedings of the IEEE international joint conference on neural networks (IJCNN’99), Washington, pp 4387–4392
12.
Zurück zum Zitat Fonseca CM, Fleming PJ (1998) Multiobjective optimization and multiple constraint handling with evolutionary algorithms—part I a unified formulation. IEEE Trans Syst Man Cybern A Syst Hum 28(1):26–37CrossRef Fonseca CM, Fleming PJ (1998) Multiobjective optimization and multiple constraint handling with evolutionary algorithms—part I a unified formulation. IEEE Trans Syst Man Cybern A Syst Hum 28(1):26–37CrossRef
13.
Zurück zum Zitat Garg AX, Adhikari NK, McDonald H et al (2005) Effects of computerized clinical decision support systems on practitioner performance and patient outcomes: a systematic review. JAMA 293(10):1223–1238CrossRef Garg AX, Adhikari NK, McDonald H et al (2005) Effects of computerized clinical decision support systems on practitioner performance and patient outcomes: a systematic review. JAMA 293(10):1223–1238CrossRef
14.
Zurück zum Zitat Giger M, Huo Z, Kupinski M, Vyborny C (2000) Computer-aided diagnosis in mammography. In: Sonka M, Fitzpatrick J (eds) Handbook of medical imaging, medical image processing and analysis, vol 2. SPIE Press, pp 917–986 Giger M, Huo Z, Kupinski M, Vyborny C (2000) Computer-aided diagnosis in mammography. In: Sonka M, Fitzpatrick J (eds) Handbook of medical imaging, medical image processing and analysis, vol 2. SPIE Press, pp 917–986
15.
Zurück zum Zitat Hamilton HJ, Shan N, Cercone N (1996) RIAC: a rule induction algorithm based on approximate classification. Technical report CS 96-06, Regina University Hamilton HJ, Shan N, Cercone N (1996) RIAC: a rule induction algorithm based on approximate classification. Technical report CS 96-06, Regina University
16.
Zurück zum Zitat Horn J, Nafpliotis N, Goldberg DE (1994) A niched Pareto genetic algorithm for multiobjective optimisation. In: Proceedings of the IEEE conference on evolutionary computation, ICEC’94, vol 1, pp 82–87 Horn J, Nafpliotis N, Goldberg DE (1994) A niched Pareto genetic algorithm for multiobjective optimisation. In: Proceedings of the IEEE conference on evolutionary computation, ICEC’94, vol 1, pp 82–87
17.
Zurück zum Zitat Hoya T, Chambers JA (2001) Heuristic pattern correction scheme using adaptively trained generalized regression neural networks. IEEE Trans Neural Netw 12(1):91–100CrossRef Hoya T, Chambers JA (2001) Heuristic pattern correction scheme using adaptively trained generalized regression neural networks. IEEE Trans Neural Netw 12(1):91–100CrossRef
18.
Zurück zum Zitat Huo Z, Giger M, Vyborny C, Wolverton D, Schmidt R, Doi K (1998) Automated computerized classification of malignant and benign mass lesions on digital mammograms. Acad Radiol 5:155–168CrossRef Huo Z, Giger M, Vyborny C, Wolverton D, Schmidt R, Doi K (1998) Automated computerized classification of malignant and benign mass lesions on digital mammograms. Acad Radiol 5:155–168CrossRef
19.
Zurück zum Zitat Jankowski N, Kadirkamanathan V (1997) Statistical control of RBF-like networks for classification. In: Proceedings of the 7th international conference on artificial neural networks, Lausanne, pp 385–390 Jankowski N, Kadirkamanathan V (1997) Statistical control of RBF-like networks for classification. In: Proceedings of the 7th international conference on artificial neural networks, Lausanne, pp 385–390
20.
Zurück zum Zitat Jiang Y, Nishikawa R, Wolverton D, Metz C, Giger ML, Schmidt R, Doi K (1996) Automated feature analysis and classification of malignant and benign microcalcifications. Radiology 198:671–678 Jiang Y, Nishikawa R, Wolverton D, Metz C, Giger ML, Schmidt R, Doi K (1996) Automated feature analysis and classification of malignant and benign microcalcifications. Radiology 198:671–678
21.
Zurück zum Zitat Kaban A, Girolami M (2000) Initialized and guided EM-clustering of sparse binary data with application to text based documents. In: 15th International conference on pattern recognition, vol 2, pp 744–747 Kaban A, Girolami M (2000) Initialized and guided EM-clustering of sparse binary data with application to text based documents. In: 15th International conference on pattern recognition, vol 2, pp 744–747
22.
Zurück zum Zitat Kohavi R (1995) A study of cross-validation and bootstrap for accuracy estimation and model selection. In: Wermter S, Riloff E, Scheler G (eds) 14th International joint conference on artificial intelligence (IJCAI). Morgan Kaufman, San Francisco, pp 1137–1145 Kohavi R (1995) A study of cross-validation and bootstrap for accuracy estimation and model selection. In: Wermter S, Riloff E, Scheler G (eds) 14th International joint conference on artificial intelligence (IJCAI). Morgan Kaufman, San Francisco, pp 1137–1145
23.
Zurück zum Zitat Liu B, Abbass HA, McKay B (2004) Classification rule discovery with ant colony optimisation. IEEE Comput Intell Bull 3(1):31–35 Liu B, Abbass HA, McKay B (2004) Classification rule discovery with ant colony optimisation. IEEE Comput Intell Bull 3(1):31–35
24.
Zurück zum Zitat Mangasarian OL, Street WN, Wolberg WH (1995) Breast cancer diagnosis and prognosis via linear programming, Operat Res 43(4):570–577MATHMathSciNetCrossRef Mangasarian OL, Street WN, Wolberg WH (1995) Breast cancer diagnosis and prognosis via linear programming, Operat Res 43(4):570–577MATHMathSciNetCrossRef
25.
Zurück zum Zitat Masters T (1995) Advanced algorithms for neural networks. Wiley, New York Masters T (1995) Advanced algorithms for neural networks. Wiley, New York
26.
Zurück zum Zitat Pendharkar PC, Rodger JA, Yaverbaum GJ, Herman N, Benner M (1999) Association, statistical, mathematical and neural approaches for mining breast cancer patterns. Exp Syst Appl 17:223–232CrossRef Pendharkar PC, Rodger JA, Yaverbaum GJ, Herman N, Benner M (1999) Association, statistical, mathematical and neural approaches for mining breast cancer patterns. Exp Syst Appl 17:223–232CrossRef
27.
Zurück zum Zitat Seker H, Odetayo M, Petrovic D, Naguib RNG, Bartoli C, Alasio L, Lakshmi MS, Sherbet GV (2000) A fuzzy measurement-based assessment of breast cancer prognostic markers. In: Proceedings of the 2000 IEEE EMBS international conference on information technology applications in biomedicine, pp 174–178 Seker H, Odetayo M, Petrovic D, Naguib RNG, Bartoli C, Alasio L, Lakshmi MS, Sherbet GV (2000) A fuzzy measurement-based assessment of breast cancer prognostic markers. In: Proceedings of the 2000 IEEE EMBS international conference on information technology applications in biomedicine, pp 174–178
28.
Zurück zum Zitat Setiono R (2000) Generating concise and accurate classification rules for breast cancer diagnosis. Artif Intell Med 18:205–219CrossRef Setiono R (2000) Generating concise and accurate classification rules for breast cancer diagnosis. Artif Intell Med 18:205–219CrossRef
29.
Zurück zum Zitat Shang N, Breiman L (1996) Distribution based trees are more accurate. In: Proceedings of the international conference on neural information processing, Hong Kong, vol 1, pp 133–138 Shang N, Breiman L (1996) Distribution based trees are more accurate. In: Proceedings of the international conference on neural information processing, Hong Kong, vol 1, pp 133–138
30.
Zurück zum Zitat Specht DF (1990) Probabilistic neural networks. Neural Netw 3(1):109–118CrossRef Specht DF (1990) Probabilistic neural networks. Neural Netw 3(1):109–118CrossRef
31.
Zurück zum Zitat Specht DF (1996) Probabilistic neural networks and general regression neural networks. In: Chen CH (eds) Fuzzy logic and neural network handbook. McGraw-Hill, New York Specht DF (1996) Probabilistic neural networks and general regression neural networks. In: Chen CH (eds) Fuzzy logic and neural network handbook. McGraw-Hill, New York
32.
Zurück zum Zitat Ster B, Dobnikar A (1996) Neural networks in medical diagnosis: Comparison with other methods. In: Bulsari A et al (eds) Proceedings of the international conference EANN ‘96, pp 427–430 Ster B, Dobnikar A (1996) Neural networks in medical diagnosis: Comparison with other methods. In: Bulsari A et al (eds) Proceedings of the international conference EANN ‘96, pp 427–430
33.
Zurück zum Zitat Street WN (1998) A neural network model for prognostic prediction. In: Proceedings of the 15th international conference on machine learning. Morgan Kaufmann Publishers Inc., San Francisco, pp 540–546 Street WN (1998) A neural network model for prognostic prediction. In: Proceedings of the 15th international conference on machine learning. Morgan Kaufmann Publishers Inc., San Francisco, pp 540–546
34.
Zurück zum Zitat Street WN, Mangasarian OL, Wolberg WH (1995) An inductive learning approach to prognostic prediction. In: 12th International conference on machine learning, pp 522–530 Street WN, Mangasarian OL, Wolberg WH (1995) An inductive learning approach to prognostic prediction. In: 12th International conference on machine learning, pp 522–530
35.
Zurück zum Zitat Taylor P, Fox J, Todd-Pokropek A (1998) Evaluation of a decision aid for the classification of microcalcifications. Digital mammography. Kluwer, Nijmegen, pp 237–244 Taylor P, Fox J, Todd-Pokropek A (1998) Evaluation of a decision aid for the classification of microcalcifications. Digital mammography. Kluwer, Nijmegen, pp 237–244
36.
Zurück zum Zitat Tourassi GD, Markey MK, Lo JY, Floyd CE Jr (2001) A neural network approach to breast cancer diagnosis as a constraint satisfaction problem. Med Phys 28:804–811CrossRef Tourassi GD, Markey MK, Lo JY, Floyd CE Jr (2001) A neural network approach to breast cancer diagnosis as a constraint satisfaction problem. Med Phys 28:804–811CrossRef
37.
Zurück zum Zitat Wang TC, Karayiannis NB (1998) Detection of microcalcifications in digital mammograms using wavelets. IEEE Trans Med Imaging 17(4):498–509CrossRef Wang TC, Karayiannis NB (1998) Detection of microcalcifications in digital mammograms using wavelets. IEEE Trans Med Imaging 17(4):498–509CrossRef
38.
Zurück zum Zitat Wojnarski M (2003) LTF-C, architecture, training algorithm and applications of new neural classifier. Fundam Informaticae 54(1):89–105MATHMathSciNet Wojnarski M (2003) LTF-C, architecture, training algorithm and applications of new neural classifier. Fundam Informaticae 54(1):89–105MATHMathSciNet
39.
Zurück zum Zitat Wolberg WH, Street WN, Mangasarian OL (1994) Machine learning techniques to diagnose breast cancer from fine-needle aspirates, Cancer Lett 77:163–171CrossRef Wolberg WH, Street WN, Mangasarian OL (1994) Machine learning techniques to diagnose breast cancer from fine-needle aspirates, Cancer Lett 77:163–171CrossRef
40.
Zurück zum Zitat Wolberg WH, Street WN, Mangasarian OL (1995) Image analysis and machine learning applied to breast cancer diagnosis and prognosis. Anal Quant Cytol Histol 17(2):77–87 Wolberg WH, Street WN, Mangasarian OL (1995) Image analysis and machine learning applied to breast cancer diagnosis and prognosis. Anal Quant Cytol Histol 17(2):77–87
41.
Zurück zum Zitat Wolberg WH, Street WN, Heisey DM, Mangasarian OL (1995) Computer-derived nuclear features distinguish malignant from benign breast cytology. Hum Pathol 26:792–796CrossRef Wolberg WH, Street WN, Heisey DM, Mangasarian OL (1995) Computer-derived nuclear features distinguish malignant from benign breast cytology. Hum Pathol 26:792–796CrossRef
42.
Zurück zum Zitat http://www.seer.cancer.gov/cgi-bin/csr/1975_2001/search.pl#results. Estimated new cancer cases and deaths for 2004 http://www.seer.cancer.gov/cgi-bin/csr/1975_2001/search.pl#results. Estimated new cancer cases and deaths for 2004
43.
Zurück zum Zitat http://www.cancernet.nci.nih.gov/. U.S. National Institutes of Health, National Cancer Institute http://www.cancernet.nci.nih.gov/. U.S. National Institutes of Health, National Cancer Institute
44.
Zurück zum Zitat http://www.seer.cancer.gov. United States National Cancer Institute, Surveillance, Epidemiology and End Results (SEER) program http://www.seer.cancer.gov. United States National Cancer Institute, Surveillance, Epidemiology and End Results (SEER) program
45.
Zurück zum Zitat http://www.ftp.ics.uci.edu/pub/machine-learning-databases/breast-cancer-wisconsin/. Wisconsin Diagnostic Breast Cancer (WDBC) Dataset and Wisconsin Prognostic Breast Cancer (WPBC) Dataset http://www.ftp.ics.uci.edu/pub/machine-learning-databases/breast-cancer-wisconsin/. Wisconsin Diagnostic Breast Cancer (WDBC) Dataset and Wisconsin Prognostic Breast Cancer (WPBC) Dataset
Metadaten
Titel
Neural network-based diagnostic and prognostic estimations in breast cancer microscopic instances
verfasst von
Ioannis Anagnostopoulos
Ilias Maglogiannis
Publikationsdatum
01.09.2006
Verlag
Springer-Verlag
Erschienen in
Medical & Biological Engineering & Computing / Ausgabe 9/2006
Print ISSN: 0140-0118
Elektronische ISSN: 1741-0444
DOI
https://doi.org/10.1007/s11517-006-0079-4

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