Skip to main content
Erschienen in: Neuroinformatics 2/2014

01.04.2014 | Review

A Review of Feature Reduction Techniques in Neuroimaging

verfasst von: Benson Mwangi, Tian Siva Tian, Jair C. Soares

Erschienen in: Neuroinformatics | Ausgabe 2/2014

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Machine learning techniques are increasingly being used in making relevant predictions and inferences on individual subjects neuroimaging scan data. Previous studies have mostly focused on categorical discrimination of patients and matched healthy controls and more recently, on prediction of individual continuous variables such as clinical scores or age. However, these studies are greatly hampered by the large number of predictor variables (voxels) and low observations (subjects) also known as the curse-of-dimensionality or small-n-large-p problem. As a result, feature reduction techniques such as feature subset selection and dimensionality reduction are used to remove redundant predictor variables and experimental noise, a process which mitigates the curse-of-dimensionality and small-n-large-p effects. Feature reduction is an essential step before training a machine learning model to avoid overfitting and therefore improving model prediction accuracy and generalization ability. In this review, we discuss feature reduction techniques used with machine learning in neuroimaging studies.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
Zurück zum Zitat Allen, E. A., Erhardt, E. B., Damaraju, E., Gruner, W., Segall, J. M., Silva, R. F., Havlicek, M., Rachakonda, S., Fries, J., Kalyanam, R., Michael, A. M., Caprihan, A., Turner, J. A., Eichele, T., Adelsheim, S., Bryan, A. D., Bustillo, J., Clark, V. P., Ewing, S. W. F., Filbey, F., Ford, C. C., Hutchison, K., Jung, R. E., Kiehl, K. A., Kodituwakku, P., Komesu, Y. M., Mayer, A. R., Pearlson, G. D., Phillips, J. R., Sadek, J. R., Michael, S., Teuscher, U., Thoma, R. J., & Calhoun, V. D. (2011). A baseline for the multivariate comparison of resting-state networks. Frontiers in systems neuroscience, 5, 2.PubMedCentralPubMed Allen, E. A., Erhardt, E. B., Damaraju, E., Gruner, W., Segall, J. M., Silva, R. F., Havlicek, M., Rachakonda, S., Fries, J., Kalyanam, R., Michael, A. M., Caprihan, A., Turner, J. A., Eichele, T., Adelsheim, S., Bryan, A. D., Bustillo, J., Clark, V. P., Ewing, S. W. F., Filbey, F., Ford, C. C., Hutchison, K., Jung, R. E., Kiehl, K. A., Kodituwakku, P., Komesu, Y. M., Mayer, A. R., Pearlson, G. D., Phillips, J. R., Sadek, J. R., Michael, S., Teuscher, U., Thoma, R. J., & Calhoun, V. D. (2011). A baseline for the multivariate comparison of resting-state networks. Frontiers in systems neuroscience, 5, 2.PubMedCentralPubMed
Zurück zum Zitat Ashburner, J. (2007). A fast diffeomorphic image registration algorithm. NeuroImage, 38, 95–113.PubMed Ashburner, J. (2007). A fast diffeomorphic image registration algorithm. NeuroImage, 38, 95–113.PubMed
Zurück zum Zitat Ashburner, J. (2009). Computational anatomy with the SPM software. Magnetic Resonance Imaging, 27, 1163–1174.PubMed Ashburner, J. (2009). Computational anatomy with the SPM software. Magnetic Resonance Imaging, 27, 1163–1174.PubMed
Zurück zum Zitat Ashburner, J., & Friston, K. (2000). Voxel-based morphometry-the methods. NeuroImage, 11, 805–821.PubMed Ashburner, J., & Friston, K. (2000). Voxel-based morphometry-the methods. NeuroImage, 11, 805–821.PubMed
Zurück zum Zitat Balci, S., Sabuncu, M., Yoo, J., Gosh, S., Gabrieli, W., Gabrieli, J., & Golland, P. (2008). Prediction of successful memory encoding from fMRI data. Med Image Comput Comput Assist Interv, 11, 97–104. Balci, S., Sabuncu, M., Yoo, J., Gosh, S., Gabrieli, W., Gabrieli, J., & Golland, P. (2008). Prediction of successful memory encoding from fMRI data. Med Image Comput Comput Assist Interv, 11, 97–104.
Zurück zum Zitat Bellman, R. (1961). Adaptive control process: A guided tour:, Princenton University. Bellman, R. (1961). Adaptive control process: A guided tour:, Princenton University.
Zurück zum Zitat Birn, R. M., Murphy, K., & Bandettini, P. A. (2008). The effect of respiration variations on independent component analysis results of resting state functional connectivity. Human Brain Mapping, 29, 740–750.PubMedCentralPubMed Birn, R. M., Murphy, K., & Bandettini, P. A. (2008). The effect of respiration variations on independent component analysis results of resting state functional connectivity. Human Brain Mapping, 29, 740–750.PubMedCentralPubMed
Zurück zum Zitat Bishop, C. (1995). Neural networks for pattern recognition. New York: Oxford University Press. Bishop, C. (1995). Neural networks for pattern recognition. New York: Oxford University Press.
Zurück zum Zitat Bishop, C. (2006). Pattern recongition and machine learning. New York: Springer. Bishop, C. (2006). Pattern recongition and machine learning. New York: Springer.
Zurück zum Zitat Bonnici, H. M., Kumaran, D., Chadwick, M. J., Weiskopf, N., Hassabis, D., & Maguire, E. A. (2011). Decoding representations of scenes in the medial temporal lobes. Hippocampus, 22, 1143–1153.PubMedCentralPubMed Bonnici, H. M., Kumaran, D., Chadwick, M. J., Weiskopf, N., Hassabis, D., & Maguire, E. A. (2011). Decoding representations of scenes in the medial temporal lobes. Hippocampus, 22, 1143–1153.PubMedCentralPubMed
Zurück zum Zitat Brammer, M. (2009). The role of neuroimaging in diagnosis and personalized medicine–current position and likely future directions. Dialogues In Clinical Neuroscience, 11, 389–396.PubMedCentralPubMed Brammer, M. (2009). The role of neuroimaging in diagnosis and personalized medicine–current position and likely future directions. Dialogues In Clinical Neuroscience, 11, 389–396.PubMedCentralPubMed
Zurück zum Zitat Bray, S., Chang, C., & Hoeft, F. (2009). Applications of multivariate pattern classification analyses in developmental neuroimaging of healthy and clinical populations. Frontiers In Human Neuroscience, 3, 32.PubMedCentralPubMed Bray, S., Chang, C., & Hoeft, F. (2009). Applications of multivariate pattern classification analyses in developmental neuroimaging of healthy and clinical populations. Frontiers In Human Neuroscience, 3, 32.PubMedCentralPubMed
Zurück zum Zitat Brown, T. T., Kuperman, J. M., Chung, Y., Erhart, M., McCabe, C., Hagler, D. J., Venkatraman, V. K., Akshoomoff, N., Amaral, D. G., and Bloss, C. S. (2012). Neuroanatomical assessment of biological maturity. Current Biology, 22(18), 1693–1698. Brown, T. T., Kuperman, J. M., Chung, Y., Erhart, M., McCabe, C., Hagler, D. J., Venkatraman, V. K., Akshoomoff, N., Amaral, D. G., and Bloss, C. S. (2012). Neuroanatomical assessment of biological maturity. Current Biology, 22(18), 1693–1698.
Zurück zum Zitat Bunea, F., She, Y., Ombao, H., Gongvatana, A., Devlin, K., & Cohen, R. (2011). Penalized least squares regression methods and applications to neuroimaging. NeuroImage, 55, 1519–1527.PubMed Bunea, F., She, Y., Ombao, H., Gongvatana, A., Devlin, K., & Cohen, R. (2011). Penalized least squares regression methods and applications to neuroimaging. NeuroImage, 55, 1519–1527.PubMed
Zurück zum Zitat Calderoni, S., Retico, A., Biagi, L., Tancredi, R., Muratori, F., & Tosetti, M. (2012). Female children with autism spectrum disorder: An insight from mass-univariate and pattern classification analyses. NeuroImage, 59, 1013–1022.PubMed Calderoni, S., Retico, A., Biagi, L., Tancredi, R., Muratori, F., & Tosetti, M. (2012). Female children with autism spectrum disorder: An insight from mass-univariate and pattern classification analyses. NeuroImage, 59, 1013–1022.PubMed
Zurück zum Zitat Calhoun, V. D., & Adali, T. L. (2006). Unmixing fMRI with independent component analysis. IEEE Engineering In Medicine And Biology Magazine: The Quarterly Magazine Of The Engineering In Medicine & Biology Society, 25, 79–90. Calhoun, V. D., & Adali, T. L. (2006). Unmixing fMRI with independent component analysis. IEEE Engineering In Medicine And Biology Magazine: The Quarterly Magazine Of The Engineering In Medicine & Biology Society, 25, 79–90.
Zurück zum Zitat Calhoun, V. D., Adali, T., Pearlson, G. D., & Pekar, J. J. (2001). A method for making group inferences from functional MRI data using independent component analysis. Human Brain Mapping, 14, 140–151.PubMed Calhoun, V. D., Adali, T., Pearlson, G. D., & Pekar, J. J. (2001). A method for making group inferences from functional MRI data using independent component analysis. Human Brain Mapping, 14, 140–151.PubMed
Zurück zum Zitat Calhoun, V. D., Liu, J., & Adali, T. L. (2009). A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data. NeuroImage, 45, S163–S172.PubMedCentralPubMed Calhoun, V. D., Liu, J., & Adali, T. L. (2009). A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data. NeuroImage, 45, S163–S172.PubMedCentralPubMed
Zurück zum Zitat Calhoun, V. D., Sui, J., Kiehl, K., Turner, J., Allen, E., & Pearlson, G. (2011). Exploring the psychosis functional connectome: aberrant intrinsic networks in schizophrenia and bipolar disorder. Frontiers in Psychiatry, 2, 75.PubMedCentralPubMed Calhoun, V. D., Sui, J., Kiehl, K., Turner, J., Allen, E., & Pearlson, G. (2011). Exploring the psychosis functional connectome: aberrant intrinsic networks in schizophrenia and bipolar disorder. Frontiers in Psychiatry, 2, 75.PubMedCentralPubMed
Zurück zum Zitat Caprihan, A., Pearlson, G. D., & Calhoun, V. D. (2008). Application of principal component analysis to distinguish patients with schizophrenia from healthy controls based on fractional anisotropy measurements. NeuroImage, 42, 675–682.PubMedCentralPubMed Caprihan, A., Pearlson, G. D., & Calhoun, V. D. (2008). Application of principal component analysis to distinguish patients with schizophrenia from healthy controls based on fractional anisotropy measurements. NeuroImage, 42, 675–682.PubMedCentralPubMed
Zurück zum Zitat Carroll, M. K., Cecchi, G. A., Rish, I., Garg, R., & Rao, A. R. (2009). Prediction and interpretation of distributed neural activity with sparse models. NeuroImage, 44, 112–122.PubMed Carroll, M. K., Cecchi, G. A., Rish, I., Garg, R., & Rao, A. R. (2009). Prediction and interpretation of distributed neural activity with sparse models. NeuroImage, 44, 112–122.PubMed
Zurück zum Zitat Casanova, R., Whitlow, C. T., Wagner, B., Williamson, J., Shumaker, S. A., Maldjian, J. A., and Espeland, M. A. (2011). High dimensional classification of structural MRI Alzheimer's disease data based on large scale regularization. Frontiers in Neuroinformatics, 5. doi:10.3389/fninf.2011.0002. Casanova, R., Whitlow, C. T., Wagner, B., Williamson, J., Shumaker, S. A., Maldjian, J. A., and Espeland, M. A. (2011). High dimensional classification of structural MRI Alzheimer's disease data based on large scale regularization. Frontiers in Neuroinformatics, 5. doi:10.​3389/​fninf.​2011.​0002.
Zurück zum Zitat Casanova, R., Whitlow, C., Wagner, B., Espeland, M., & Maldjian, J. (2012). Combining graph and machine learning methods to analyze differences in functional connectivity across sex. The Open Neuroimaging Journal, 6, 1.PubMedCentralPubMed Casanova, R., Whitlow, C., Wagner, B., Espeland, M., & Maldjian, J. (2012). Combining graph and machine learning methods to analyze differences in functional connectivity across sex. The Open Neuroimaging Journal, 6, 1.PubMedCentralPubMed
Zurück zum Zitat Castro, E., Martanez-Ramon, M., Pearlson, G., Sui, J., & Calhoun, V. D. (2011a). Characterization of groups using composite kernels and multi-source fMRI analysis data: Application to schizophrenia. NeuroImage, 58, 526–536.PubMedCentralPubMed Castro, E., Martanez-Ramon, M., Pearlson, G., Sui, J., & Calhoun, V. D. (2011a). Characterization of groups using composite kernels and multi-source fMRI analysis data: Application to schizophrenia. NeuroImage, 58, 526–536.PubMedCentralPubMed
Zurück zum Zitat Castro, E., Martinez-Raman, M., Pearlson, G., Sui, J., & Calhoun, V. D. (2011b). Characterization of groups using composite kernels and multi-source fMRI analysis data: application to schizophrenia. NeuroImage, 58, 526–536.PubMedCentralPubMed Castro, E., Martinez-Raman, M., Pearlson, G., Sui, J., & Calhoun, V. D. (2011b). Characterization of groups using composite kernels and multi-source fMRI analysis data: application to schizophrenia. NeuroImage, 58, 526–536.PubMedCentralPubMed
Zurück zum Zitat Chadwick, M. J., Hassabis, D., Weiskopf, N., & Maguire, E. A. (2010). Decoding individual episodic memory traces in the human hippocampus. Current Biology, 20, 544–547.PubMedCentralPubMed Chadwick, M. J., Hassabis, D., Weiskopf, N., & Maguire, E. A. (2010). Decoding individual episodic memory traces in the human hippocampus. Current Biology, 20, 544–547.PubMedCentralPubMed
Zurück zum Zitat Chai, J.-W., Chi-Chang Chen, C., Chiang, C.-M., Ho, Y.-J., Chen, H.-M., Ouyang, Y.-C., Yang, C.-W., Lee, S.-K., & Chang, C.-I. (2010). Quantitative analysis in clinical applications of brain MRI using independent component analysis coupled with support vector machine. Journal Of Magnetic Resonance Imaging: JMRI, 32, 24–34.PubMed Chai, J.-W., Chi-Chang Chen, C., Chiang, C.-M., Ho, Y.-J., Chen, H.-M., Ouyang, Y.-C., Yang, C.-W., Lee, S.-K., & Chang, C.-I. (2010). Quantitative analysis in clinical applications of brain MRI using independent component analysis coupled with support vector machine. Journal Of Magnetic Resonance Imaging: JMRI, 32, 24–34.PubMed
Zurück zum Zitat Chaves, R., Ramarez, J., Garriz, J. M., Lopez, M., Salas-Gonzalez, D., Alvarez, I., & Segovia, F. (2009). SVM-based computer-aided diagnosis of the Alzheimer's disease using t-test NMSE feature selection with feature correlation weighting. Neuroscience Letters, 461, 293–297.PubMed Chaves, R., Ramarez, J., Garriz, J. M., Lopez, M., Salas-Gonzalez, D., Alvarez, I., & Segovia, F. (2009). SVM-based computer-aided diagnosis of the Alzheimer's disease using t-test NMSE feature selection with feature correlation weighting. Neuroscience Letters, 461, 293–297.PubMed
Zurück zum Zitat Chen, K., Reiman, E. M., Huan, Z., Caselli, R. J., Bandy, D., Ayutyanont, N., & Alexander, G. E. (2009). Linking functional and structural brain images with multivariate network analyses: A novel application of the partial least square method. NeuroImage, 47, 602–610.PubMedCentralPubMed Chen, K., Reiman, E. M., Huan, Z., Caselli, R. J., Bandy, D., Ayutyanont, N., & Alexander, G. E. (2009). Linking functional and structural brain images with multivariate network analyses: A novel application of the partial least square method. NeuroImage, 47, 602–610.PubMedCentralPubMed
Zurück zum Zitat Cheng, W., Ji, X., Zhang, J., & Feng, J. (2012). Individual classification of ADHD patients by integrating multiscale neuroimaging markers and advanced pattern recognition techniques. Frontiers In Systems Neuroscience, 6. Cheng, W., Ji, X., Zhang, J., & Feng, J. (2012). Individual classification of ADHD patients by integrating multiscale neuroimaging markers and advanced pattern recognition techniques. Frontiers In Systems Neuroscience, 6.
Zurück zum Zitat Chu, C., Hsu, A.-L., Chou, K.-H., Bandettini, P., & Lin, C. (2012). Does feature selection improve classification accuracy? Impact of sample size and feature selection on classification using anatomical magnetic resonance images. NeuroImage, 60, 59–70.PubMed Chu, C., Hsu, A.-L., Chou, K.-H., Bandettini, P., & Lin, C. (2012). Does feature selection improve classification accuracy? Impact of sample size and feature selection on classification using anatomical magnetic resonance images. NeuroImage, 60, 59–70.PubMed
Zurück zum Zitat Cohen, J. (1998). Statistical power analysis for the behavioural sciences- 2nd edition. New Jersey: Lawrence Erbaum Associates. Cohen, J. (1998). Statistical power analysis for the behavioural sciences- 2nd edition. New Jersey: Lawrence Erbaum Associates.
Zurück zum Zitat Correa, N., AdalÄ, T., & Calhoun, V. D. (2007). Performance of blind source separation algorithms for fMRI analysis using a group ICA method. Magnetic Resonance Imaging, 25, 684–694.PubMedCentralPubMed Correa, N., AdalÄ, T., & Calhoun, V. D. (2007). Performance of blind source separation algorithms for fMRI analysis using a group ICA method. Magnetic Resonance Imaging, 25, 684–694.PubMedCentralPubMed
Zurück zum Zitat Costafreda, S. G., Chu, C., Ashburner, J., & Fu, C. H. Y. (2009). Prognostic and diagnostic potential of the structural neuroanatomy of depression. Plos One, 4, e6353.PubMedCentralPubMed Costafreda, S. G., Chu, C., Ashburner, J., & Fu, C. H. Y. (2009). Prognostic and diagnostic potential of the structural neuroanatomy of depression. Plos One, 4, e6353.PubMedCentralPubMed
Zurück zum Zitat Costafreda, S., Fu, C., Picchioni, M., Toulopoulou, T., McDonald, C., Kravariti, E., Walsge, M., Prata, D., Murray, R., & McGuire, P. (2011). Pattern of neural responses to verbal fluency shows diagnostic specificity for schizophrenia and bipolar disorder. BMC Psychiatry, 11, 18.PubMedCentralPubMed Costafreda, S., Fu, C., Picchioni, M., Toulopoulou, T., McDonald, C., Kravariti, E., Walsge, M., Prata, D., Murray, R., & McGuire, P. (2011). Pattern of neural responses to verbal fluency shows diagnostic specificity for schizophrenia and bipolar disorder. BMC Psychiatry, 11, 18.PubMedCentralPubMed
Zurück zum Zitat Coutanche, M. N., Thompson-Schill, S. L., & Schultz, R. T. (2011). Multi-voxel pattern analysis of fMRI data predicts clinical symptom severity. NeuroImage, 57, 113–123.PubMedCentralPubMed Coutanche, M. N., Thompson-Schill, S. L., & Schultz, R. T. (2011). Multi-voxel pattern analysis of fMRI data predicts clinical symptom severity. NeuroImage, 57, 113–123.PubMedCentralPubMed
Zurück zum Zitat Cox, D. D., & Savoy, R. L. (2003). Functional magnetic resonance imaging (fMRI) "brain reading"•: detecting and classifying distributed patterns of fMRI activity in human visual cortex. NeuroImage, 19, 261–270.PubMed Cox, D. D., & Savoy, R. L. (2003). Functional magnetic resonance imaging (fMRI) "brain reading"•: detecting and classifying distributed patterns of fMRI activity in human visual cortex. NeuroImage, 19, 261–270.PubMed
Zurück zum Zitat Craddock, R. C., Holtzheimer, P. E., 3rd, Hu, X. P., & Mayberg, H. S. (2009). Disease state prediction from resting state functional connectivity. Magnetic Resonance In Medicine: Official Journal Of The Society Of Magnetic Resonance In Medicine/Society Of Magnetic Resonance In Medicine, 62, 1619–1628. Craddock, R. C., Holtzheimer, P. E., 3rd, Hu, X. P., & Mayberg, H. S. (2009). Disease state prediction from resting state functional connectivity. Magnetic Resonance In Medicine: Official Journal Of The Society Of Magnetic Resonance In Medicine/Society Of Magnetic Resonance In Medicine, 62, 1619–1628.
Zurück zum Zitat Dai, Z., Yan, C., Wang, Z., Wang, J., Xia, M., Li, K., & He, Y. (2012). Discriminative analysis of early Alzheimer's disease using multi-modal imaging and multi-level characterization with multi-classifier (M3). NeuroImage, 59, 2187–2195.PubMed Dai, Z., Yan, C., Wang, Z., Wang, J., Xia, M., Li, K., & He, Y. (2012). Discriminative analysis of early Alzheimer's disease using multi-modal imaging and multi-level characterization with multi-classifier (M3). NeuroImage, 59, 2187–2195.PubMed
Zurück zum Zitat Davatzikos, C., Fan, Y., Wu, X., Shen, D., & Resnick, S. M. (2008). Detection of prodromal Alzheimer's disease via pattern classification of magnetic resonance imaging. Neurobiology of Aging, 29, 514–523.PubMedCentralPubMed Davatzikos, C., Fan, Y., Wu, X., Shen, D., & Resnick, S. M. (2008). Detection of prodromal Alzheimer's disease via pattern classification of magnetic resonance imaging. Neurobiology of Aging, 29, 514–523.PubMedCentralPubMed
Zurück zum Zitat De Martino, F., Gentile, F., Esposito, F., Balsi, M., Di Salle, F., Goebel, R., & Formisano, E. (2007). Classification of fMRI independent components using IC-fingerprints and support vector machine classifiers. NeuroImage, 34, 177–194.PubMed De Martino, F., Gentile, F., Esposito, F., Balsi, M., Di Salle, F., Goebel, R., & Formisano, E. (2007). Classification of fMRI independent components using IC-fingerprints and support vector machine classifiers. NeuroImage, 34, 177–194.PubMed
Zurück zum Zitat De Martino, F., Valente, G., Staeren, N. L., Ashburner, J., Goebel, R., & Formisano, E. (2008). Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns. NeuroImage, 43, 44–58.PubMed De Martino, F., Valente, G., Staeren, N. L., Ashburner, J., Goebel, R., & Formisano, E. (2008). Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns. NeuroImage, 43, 44–58.PubMed
Zurück zum Zitat Deshpande, G., Li, Z., Santhanam, P., Coles, C. D., Lynch, M. E., Hamann, S., & Hu, X. (2010). Recursive cluster elimination based support vector machine for disease state prediction using resting state functional and effective brain connectivity. Plos One, 5, e14277.PubMedCentralPubMed Deshpande, G., Li, Z., Santhanam, P., Coles, C. D., Lynch, M. E., Hamann, S., & Hu, X. (2010). Recursive cluster elimination based support vector machine for disease state prediction using resting state functional and effective brain connectivity. Plos One, 5, e14277.PubMedCentralPubMed
Zurück zum Zitat Dosenbach, N. U. F., Nardos, B., Cohen, A. L., Fair, D. A., Power, J. D., Church, J. A., Nelson, S. M., Wig, G. S., Vogel, A. C., Lessov-Schlaggar, C. N., et al. (2010). Prediction of individual brain maturity using fMRI. Science, 329, 1358–1361.PubMedCentralPubMed Dosenbach, N. U. F., Nardos, B., Cohen, A. L., Fair, D. A., Power, J. D., Church, J. A., Nelson, S. M., Wig, G. S., Vogel, A. C., Lessov-Schlaggar, C. N., et al. (2010). Prediction of individual brain maturity using fMRI. Science, 329, 1358–1361.PubMedCentralPubMed
Zurück zum Zitat Douglas, P. K., Harris, S., Yuille, A., & Cohen, M. S. (2011). Performance comparison of machine learning algorithms and number of independent components used in fMRI decoding of belief vs. disbelief. NeuroImage, 56, 544–553.PubMedCentralPubMed Douglas, P. K., Harris, S., Yuille, A., & Cohen, M. S. (2011). Performance comparison of machine learning algorithms and number of independent components used in fMRI decoding of belief vs. disbelief. NeuroImage, 56, 544–553.PubMedCentralPubMed
Zurück zum Zitat Doyle, O. M., Ashburner, J., Zelaya, F. O., Williams, S. C. R., Mehta, M. A., & Marquand, A. F. (2013). Multivariate decoding of brain images using ordinal regression. NeuroImage, 81, 347–357.PubMed Doyle, O. M., Ashburner, J., Zelaya, F. O., Williams, S. C. R., Mehta, M. A., & Marquand, A. F. (2013). Multivariate decoding of brain images using ordinal regression. NeuroImage, 81, 347–357.PubMed
Zurück zum Zitat Duchesnay, E., Roche, A., Riviere, D., Papadopoulos, D., Cointepas, Y., and Mangin, J.-F. (2004). Population classification based on structural morphometry of cortical sulci. Paper presented at: Biomedical Imaging: Nano to Macro, 2004. Duchesnay, E., Roche, A., Riviere, D., Papadopoulos, D., Cointepas, Y., and Mangin, J.-F. (2004). Population classification based on structural morphometry of cortical sulci. Paper presented at: Biomedical Imaging: Nano to Macro, 2004.
Zurück zum Zitat Duchesnay, E., Cachia, A., Roche, A., Riviere, D., Cointepas, Y., Papadopoulos-Orfanos, D., Zilbovicius, M., Martinot, J.-L., Regis, J., & Mangin, J.-F. (2007). Classification based on cortical folding patterns. Medical Imaging, IEEE Transactions, 26, 553–565. Duchesnay, E., Cachia, A., Roche, A., Riviere, D., Cointepas, Y., Papadopoulos-Orfanos, D., Zilbovicius, M., Martinot, J.-L., Regis, J., & Mangin, J.-F. (2007). Classification based on cortical folding patterns. Medical Imaging, IEEE Transactions, 26, 553–565.
Zurück zum Zitat Duchesnay, E., Cachia, A., Boddaert, N., Chabane, N., Mangin, J.-F., Martinot, J.-L., Brunelle, F., & Zilbovicius, M. (2011). Feature selection and classification of imbalanced datasets: Application to PET images of children with autistic spectrum disorders. NeuroImage, 57, 1003–1014.PubMed Duchesnay, E., Cachia, A., Boddaert, N., Chabane, N., Mangin, J.-F., Martinot, J.-L., Brunelle, F., & Zilbovicius, M. (2011). Feature selection and classification of imbalanced datasets: Application to PET images of children with autistic spectrum disorders. NeuroImage, 57, 1003–1014.PubMed
Zurück zum Zitat Duff, E. P., Trachtenberg, A. J., Mackay, C. E., Howard, M. A., Wilson, F., Smith, S. M., and Woolrich, M. W. (2011). Task-driven ICA feature generation for accurate and interpretable prediction using fMRI. NeuroImage, 6(1), 189–203. Duff, E. P., Trachtenberg, A. J., Mackay, C. E., Howard, M. A., Wilson, F., Smith, S. M., and Woolrich, M. W. (2011). Task-driven ICA feature generation for accurate and interpretable prediction using fMRI. NeuroImage, 6(1), 189–203.
Zurück zum Zitat Dukart, J., Mueller, K., Barthel, H., Villringer, A., Sabri, O., and Schroeter, M. L. (2012). Meta-analysis based SVM classification enables accurate detection of Alzheimer's disease across different clinical centers using FDG-PET and MRI. Psychiatry Research: Neuroimaging, 212(3), 230–236. Dukart, J., Mueller, K., Barthel, H., Villringer, A., Sabri, O., and Schroeter, M. L. (2012). Meta-analysis based SVM classification enables accurate detection of Alzheimer's disease across different clinical centers using FDG-PET and MRI. Psychiatry Research: Neuroimaging, 212(3), 230–236.
Zurück zum Zitat Ecker, C., Rocha-Rego, V., Johnston, P., Mourao-Miranda, J., Marquand, A., Daly, E. M., Brammer, M. J., Murphy, C., & Murphy, D. G. (2010). Investigating the predictive value of whole-brain structural MR scans in autism: a pattern classification approach. NeuroImage, 49, 44–56.PubMed Ecker, C., Rocha-Rego, V., Johnston, P., Mourao-Miranda, J., Marquand, A., Daly, E. M., Brammer, M. J., Murphy, C., & Murphy, D. G. (2010). Investigating the predictive value of whole-brain structural MR scans in autism: a pattern classification approach. NeuroImage, 49, 44–56.PubMed
Zurück zum Zitat Eickhoff, S., Laird, A., Grefkes, C., Wang, L., Zilles, K., & Fox, P. (2009). Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: a random-effects approach based on empirical estimates of spatial uncertainty. Human Brain Mapping, 30, 2907–2926.PubMedCentralPubMed Eickhoff, S., Laird, A., Grefkes, C., Wang, L., Zilles, K., & Fox, P. (2009). Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: a random-effects approach based on empirical estimates of spatial uncertainty. Human Brain Mapping, 30, 2907–2926.PubMedCentralPubMed
Zurück zum Zitat Erhardt, E. B., Rachakonda, S., Bedrick, E. J., Allen, E. A., Adali, T., & Calhoun, V. D. (2011). Comparison of multi-subject ICA methods for analysis of fMRI data. Human Brain Mapping, 32, 2075–2095.PubMedCentralPubMed Erhardt, E. B., Rachakonda, S., Bedrick, E. J., Allen, E. A., Adali, T., & Calhoun, V. D. (2011). Comparison of multi-subject ICA methods for analysis of fMRI data. Human Brain Mapping, 32, 2075–2095.PubMedCentralPubMed
Zurück zum Zitat Fan, Y., Shen, D., Gur, R. C., Gur, R. E., & Davatzikos, C. (2006). COMPARE: Classification of Morphological Patterns Using Adaptive Regional Elements. Medical Imaging, IEEE Transactions, 26, 93–105. Fan, Y., Shen, D., Gur, R. C., Gur, R. E., & Davatzikos, C. (2006). COMPARE: Classification of Morphological Patterns Using Adaptive Regional Elements. Medical Imaging, IEEE Transactions, 26, 93–105.
Zurück zum Zitat Fan, Y., Rao, H., Hurt, H., Giannetta, J., Korczykowski, M., Shera, D., Avants, B., & Gee, J. (2007). Multivariate examination of brain abnormality using both structural and functional MRI. NeuroImage, 36, 1189–1199.PubMed Fan, Y., Rao, H., Hurt, H., Giannetta, J., Korczykowski, M., Shera, D., Avants, B., & Gee, J. (2007). Multivariate examination of brain abnormality using both structural and functional MRI. NeuroImage, 36, 1189–1199.PubMed
Zurück zum Zitat Fan, Y., Kaufer, D., and Shen, D. (2010). Joint estimation of multiple clinical variables of neurological diseases from imaging patterns. Paper presented at: Biomedical Imaging: From Nano to Macro, 2010 I.E. International Symposium on (IEEE). Fan, Y., Kaufer, D., and Shen, D. (2010). Joint estimation of multiple clinical variables of neurological diseases from imaging patterns. Paper presented at: Biomedical Imaging: From Nano to Macro, 2010 I.E. International Symposium on (IEEE).
Zurück zum Zitat Formisano, E., De Martino, F., & Valente, G. (2008). Multivariate analysis of fMRI time series: classification and regression of brain responses using machine learning. Magnetic Resonance Imaging, 26, 921–934.PubMed Formisano, E., De Martino, F., & Valente, G. (2008). Multivariate analysis of fMRI time series: classification and regression of brain responses using machine learning. Magnetic Resonance Imaging, 26, 921–934.PubMed
Zurück zum Zitat Fort, G., & Lambert-Lacroix, S. (2005). Classification using partial least squares with penalized logistic regression. Bioinformatics, 21, 1104–1111.PubMed Fort, G., & Lambert-Lacroix, S. (2005). Classification using partial least squares with penalized logistic regression. Bioinformatics, 21, 1104–1111.PubMed
Zurück zum Zitat Franke, K., Ziegler, G., Kloppel, S., & Gaser, C. (2010). Estimating the age of healthy subjects from T1-weighted MRI scans using kernel methods: exploring the influence of various parameters. NeuroImage, 50, 883–892.PubMed Franke, K., Ziegler, G., Kloppel, S., & Gaser, C. (2010). Estimating the age of healthy subjects from T1-weighted MRI scans using kernel methods: exploring the influence of various parameters. NeuroImage, 50, 883–892.PubMed
Zurück zum Zitat Franke, K., Luders, E., May, A., Wilke, M., & Gaser, C. (2012). Brain maturation: Predicting individual BrainAGE in children and adolescents using structural MRI. NeuroImage, 63, 1305–1312.PubMed Franke, K., Luders, E., May, A., Wilke, M., & Gaser, C. (2012). Brain maturation: Predicting individual BrainAGE in children and adolescents using structural MRI. NeuroImage, 63, 1305–1312.PubMed
Zurück zum Zitat Friedman, J., Hastie, T., & Tibshirani, R. (2010). Regularization paths for generalized linear models via coordinate descent. Journal of Statistical Software, 33, 1.PubMedCentralPubMed Friedman, J., Hastie, T., & Tibshirani, R. (2010). Regularization paths for generalized linear models via coordinate descent. Journal of Statistical Software, 33, 1.PubMedCentralPubMed
Zurück zum Zitat Friston, K. J., Poline, J. B., Holmes, A. P., Frith, C. D., & Frakowiack, R. S. (1996). A multivariate analysis of PET activation studies. Human Brain Mapping, 4, 140–151.PubMed Friston, K. J., Poline, J. B., Holmes, A. P., Frith, C. D., & Frakowiack, R. S. (1996). A multivariate analysis of PET activation studies. Human Brain Mapping, 4, 140–151.PubMed
Zurück zum Zitat Fu, C. H. Y., Mourao-Miranda, J., Costafreda, S. G., Khanna, A., Marquand, A. F., Williams, S. C. R., & Brammer, M. J. (2008). Pattern classification of sad facial processing: toward the development of neurobiological markers in depression. Biological Psychiatry, 63, 656–662.PubMed Fu, C. H. Y., Mourao-Miranda, J., Costafreda, S. G., Khanna, A., Marquand, A. F., Williams, S. C. R., & Brammer, M. J. (2008). Pattern classification of sad facial processing: toward the development of neurobiological markers in depression. Biological Psychiatry, 63, 656–662.PubMed
Zurück zum Zitat Gothelf, D., Hoeft, F., Ueno, T., Sugiura, L., Lee, A. D., Thompson, P., & Reiss, A. L. (2011). Developmental changes in multivariate neuroanatomical patterns that predict risk for psychosis in 22q11.2 deletion syndrome. Journal Of Psychiatric Research, 45, 322–331.PubMedCentralPubMed Gothelf, D., Hoeft, F., Ueno, T., Sugiura, L., Lee, A. D., Thompson, P., & Reiss, A. L. (2011). Developmental changes in multivariate neuroanatomical patterns that predict risk for psychosis in 22q11.2 deletion syndrome. Journal Of Psychiatric Research, 45, 322–331.PubMedCentralPubMed
Zurück zum Zitat Grana, M., Termenon, M., Savio, A., Gonzalez-Pinto, A., Echeveste, J., Perez, J. M., & Besga, A. (2011). Computer aided diagnosis system for Alzheimer disease using brain diffusion tensor imaging features selected by pearson's correlation. Neuroscience Letters, 502, 225–229.PubMed Grana, M., Termenon, M., Savio, A., Gonzalez-Pinto, A., Echeveste, J., Perez, J. M., & Besga, A. (2011). Computer aided diagnosis system for Alzheimer disease using brain diffusion tensor imaging features selected by pearson's correlation. Neuroscience Letters, 502, 225–229.PubMed
Zurück zum Zitat Greenberg, A. S., Esterman, M., Wilson, D., Serences, J. T., & Yantis, S. (2010). Control of spatial and feature-based attention in frontoparietal cortex. The Journal of Neuroscience, 30, 14330–14339.PubMedCentralPubMed Greenberg, A. S., Esterman, M., Wilson, D., Serences, J. T., & Yantis, S. (2010). Control of spatial and feature-based attention in frontoparietal cortex. The Journal of Neuroscience, 30, 14330–14339.PubMedCentralPubMed
Zurück zum Zitat Guyon, I., & Elisseeff, A. (2003). An introduction to variable and feature selection. Journal of Machine Learning, 7(8), 1157–1182. Guyon, I., & Elisseeff, A. (2003). An introduction to variable and feature selection. Journal of Machine Learning, 7(8), 1157–1182.
Zurück zum Zitat Guyon, I., Weston, J., Barnhill, S., & Vapnik, V. (2001). Gene selection for cancer classification using support vector machines. Machine Learning, 46, 389–422. Guyon, I., Weston, J., Barnhill, S., & Vapnik, V. (2001). Gene selection for cancer classification using support vector machines. Machine Learning, 46, 389–422.
Zurück zum Zitat Haller, S., Bartsch, A., Nguyen, D., Rodriguez, C., Emch, J., Gold, G., Lovblad, K. O., & Giannakopoulos, P. (2010a). Cerebral microhemorrhage and iron deposition in mild cognitive impairment: susceptibility-weighted MR imaging assessment. Radiology, 257, 764–773.PubMed Haller, S., Bartsch, A., Nguyen, D., Rodriguez, C., Emch, J., Gold, G., Lovblad, K. O., & Giannakopoulos, P. (2010a). Cerebral microhemorrhage and iron deposition in mild cognitive impairment: susceptibility-weighted MR imaging assessment. Radiology, 257, 764–773.PubMed
Zurück zum Zitat Haller, S., Nguyen, D., Rodriguez, C., Emch, J., Gold, G., Bartsch, A., Lovblad, K. O., & Giannakopoulos, P. (2010b). Individual prediction of cognitive decline in mild cognitive impairment using support vector machine-based analysis of diffusion tensor imaging data. Journal of Alzheimer's disease, 22, 315–327.PubMed Haller, S., Nguyen, D., Rodriguez, C., Emch, J., Gold, G., Bartsch, A., Lovblad, K. O., & Giannakopoulos, P. (2010b). Individual prediction of cognitive decline in mild cognitive impairment using support vector machine-based analysis of diffusion tensor imaging data. Journal of Alzheimer's disease, 22, 315–327.PubMed
Zurück zum Zitat Hansen, L. K., Larsen, J., Nielsen, F. Ã., Strother, S. C., Rostrup, E., Savoy, R., Lange, N., Sidtis, J., Svarer, C., & Paulson, O. B. (1999). Generalizable patterns in neuroimaging: How many principal components? NeuroImage, 9, 534–544.PubMed Hansen, L. K., Larsen, J., Nielsen, F. Ã., Strother, S. C., Rostrup, E., Savoy, R., Lange, N., Sidtis, J., Svarer, C., & Paulson, O. B. (1999). Generalizable patterns in neuroimaging: How many principal components? NeuroImage, 9, 534–544.PubMed
Zurück zum Zitat Hanson, S. J., & Halchenko, Y. O. (2008). Brain reading using full brain support vector machines for object recognition: there is no "face" identification area. Neural Computation, 20, 486–503.PubMed Hanson, S. J., & Halchenko, Y. O. (2008). Brain reading using full brain support vector machines for object recognition: there is no "face" identification area. Neural Computation, 20, 486–503.PubMed
Zurück zum Zitat Haynes, J.-D., & Rees, G. (2005). Predicting the orientation of invisible stimuli from activity in human primary visual cortex. Nature Neuroscience, 8, 686–691.PubMed Haynes, J.-D., & Rees, G. (2005). Predicting the orientation of invisible stimuli from activity in human primary visual cortex. Nature Neuroscience, 8, 686–691.PubMed
Zurück zum Zitat He, W., Wang, Z., & Jiang, H. (2008). Model optimizing and feature selecting for support vector regression in time series forecasting. Neurocomputing Machine Learning for Signal Processing (MLSP 2006)/Life System Modelling, Simulation, and Bio-inspired Computing (LSMS 2007), 72, 600–611. He, W., Wang, Z., & Jiang, H. (2008). Model optimizing and feature selecting for support vector regression in time series forecasting. Neurocomputing Machine Learning for Signal Processing (MLSP 2006)/Life System Modelling, Simulation, and Bio-inspired Computing (LSMS 2007), 72, 600–611.
Zurück zum Zitat Hinrichs, C., Singh, V., Mukherjee, L., Xu, G., Chung, M. K., & Johnson, S. C. (2009). Spatially augmented LPboosting for AD classification with evaluations on the ADNI dataset. NeuroImage, 48, 138–149.PubMedCentralPubMed Hinrichs, C., Singh, V., Mukherjee, L., Xu, G., Chung, M. K., & Johnson, S. C. (2009). Spatially augmented LPboosting for AD classification with evaluations on the ADNI dataset. NeuroImage, 48, 138–149.PubMedCentralPubMed
Zurück zum Zitat Hoeft, F., Walter, E., Lightbody, A. A., Hazlett, H. C., Chang, C., Piven, J., & Reiss, A. L. (2011). Neuroanatomical differences in toddler boys with fragile x syndrome and idiopathic autism. Archives Of General Psychiatry, 68, 295–305.PubMed Hoeft, F., Walter, E., Lightbody, A. A., Hazlett, H. C., Chang, C., Piven, J., & Reiss, A. L. (2011). Neuroanatomical differences in toddler boys with fragile x syndrome and idiopathic autism. Archives Of General Psychiatry, 68, 295–305.PubMed
Zurück zum Zitat Hua, T. W., & Dougherty, E. (2009). Performance of feature-selection methods in the classification of high-dimension data. Pattern Recognition, 42, 409–424. Hua, T. W., & Dougherty, E. (2009). Performance of feature-selection methods in the classification of high-dimension data. Pattern Recognition, 42, 409–424.
Zurück zum Zitat Ince, N. F., Goksu, F., Pellizzer, G., Tewfik, A., and Stephane, M. (2008). Selection of spectro-temporal patterns in multichannel MEG with support vector machines for schizophrenia classification. Paper presented at: Engineering in Medicine and Biology Society, 2008. Ince, N. F., Goksu, F., Pellizzer, G., Tewfik, A., and Stephane, M. (2008). Selection of spectro-temporal patterns in multichannel MEG with support vector machines for schizophrenia classification. Paper presented at: Engineering in Medicine and Biology Society, 2008.
Zurück zum Zitat Ingalhalikar, M., Parker, D., Bloy, L., Roberts, T. P. L., & Verma, R. (2011). Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD. NeuroImage, 57, 918–927.PubMedCentralPubMed Ingalhalikar, M., Parker, D., Bloy, L., Roberts, T. P. L., & Verma, R. (2011). Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD. NeuroImage, 57, 918–927.PubMedCentralPubMed
Zurück zum Zitat Johansen-Berg, H., & Behrens, T. (2009). Diffusion MRI - from quantitative measurements to in-vivo neuroanatomy. London: UK, Academic Press. Johansen-Berg, H., & Behrens, T. (2009). Diffusion MRI - from quantitative measurements to in-vivo neuroanatomy. London: UK, Academic Press.
Zurück zum Zitat Johnston, B., Mwangi, B., Matthews, K., Coghill, D., and Steele, J. (2012). Predictive classification of individual magnetic resonance imaging scans from children and adolescents. European Child & Adolescent Psychiatry (Springer Berlin/Heidelberg), pp. 1–12. Johnston, B., Mwangi, B., Matthews, K., Coghill, D., and Steele, J. (2012). Predictive classification of individual magnetic resonance imaging scans from children and adolescents. European Child & Adolescent Psychiatry (Springer Berlin/Heidelberg), pp. 1–12.
Zurück zum Zitat Joliffe, I. (2002). Principle component analysis. New York: Springer. Joliffe, I. (2002). Principle component analysis. New York: Springer.
Zurück zum Zitat Kjems, U., Hansen, L. K., Anderson, J., Frutiger, S., Muley, S., Sidtis, J., Rottenberg, D., & Strother, S. (2002). The quantitative evaluation of functional neuroimaging experiments: Mutual information learning curves. NeuroImage, 15, 772–786.PubMed Kjems, U., Hansen, L. K., Anderson, J., Frutiger, S., Muley, S., Sidtis, J., Rottenberg, D., & Strother, S. (2002). The quantitative evaluation of functional neuroimaging experiments: Mutual information learning curves. NeuroImage, 15, 772–786.PubMed
Zurück zum Zitat Kloppel, S., Stonnington, C., Chu, C., Draganski, B., Scahill, R., Rohrer, J., Fox, N., Jack, C., Jr., Ashburner, J., & Frackowiak, R. (2008). Automatic classification of MR scans in Alzheimer's disease. Brain: A Journal of Neurology, 131, 681–689. Kloppel, S., Stonnington, C., Chu, C., Draganski, B., Scahill, R., Rohrer, J., Fox, N., Jack, C., Jr., Ashburner, J., & Frackowiak, R. (2008). Automatic classification of MR scans in Alzheimer's disease. Brain: A Journal of Neurology, 131, 681–689.
Zurück zum Zitat Kohannim, O., Hibar, D., Jahanshad, N., Stein, J., Hua, X., Toga, A., Jack, C., Weinen, M., and Thompson, P. (2012a). Predicting temporal lobe volume on MRI from genotypes using L1-L 2regularized regression. Paper presented at: Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on (IEEE). Kohannim, O., Hibar, D., Jahanshad, N., Stein, J., Hua, X., Toga, A., Jack, C., Weinen, M., and Thompson, P. (2012a). Predicting temporal lobe volume on MRI from genotypes using L1-L 2regularized regression. Paper presented at: Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on (IEEE).
Zurück zum Zitat Kohannim, O., Hibar, D. P., Stein, J. L., Jahanshad, N., Hua, X., Rajagopalan, P., Toga, A. W., Jack, C. R., Jr., Weiner, M. W., & de Zubicaray, G. I. (2012b). Discovery and replication of gene influences on brain structure using LASSO regression. Frontiers in Neuroscience, 6. Kohannim, O., Hibar, D. P., Stein, J. L., Jahanshad, N., Hua, X., Rajagopalan, P., Toga, A. W., Jack, C. R., Jr., Weiner, M. W., & de Zubicaray, G. I. (2012b). Discovery and replication of gene influences on brain structure using LASSO regression. Frontiers in Neuroscience, 6.
Zurück zum Zitat Kohavi, R., & John, G. (1997). Wrappers for feature subset selection. Artificial Intelligence, 97, 1–2. Kohavi, R., & John, G. (1997). Wrappers for feature subset selection. Artificial Intelligence, 97, 1–2.
Zurück zum Zitat Koutsouleris, N., Meisenzahl, E. M., Davatzikos, C., Bottlender, R., Frodl, T., Scheuerecker, J., Schmitt, G., Zetzsche, T., Decker, P., Reiser, M., et al. (2009). Use of neuroanatomical pattern classification to identify subjects in at-risk mental states of psychosis and predict disease transition. Archives of General Psychiatry, 66, 700–712.PubMed Koutsouleris, N., Meisenzahl, E. M., Davatzikos, C., Bottlender, R., Frodl, T., Scheuerecker, J., Schmitt, G., Zetzsche, T., Decker, P., Reiser, M., et al. (2009). Use of neuroanatomical pattern classification to identify subjects in at-risk mental states of psychosis and predict disease transition. Archives of General Psychiatry, 66, 700–712.PubMed
Zurück zum Zitat Kovalev, V. A., Petrou, M., & Suckling, J. (2003). Detection of structural differences between the brains of schizophrenic patients and controls. Psychiatry Research: Neuroimaging, 124, 177–189.PubMed Kovalev, V. A., Petrou, M., & Suckling, J. (2003). Detection of structural differences between the brains of schizophrenic patients and controls. Psychiatry Research: Neuroimaging, 124, 177–189.PubMed
Zurück zum Zitat Kriegeskorte, N., Goebel, R., & Bandettini, P. (2006). Information-based functional brain mapping. Proceedings of the National Academy of Sciences of the United States of America, 103, 3863–3868.PubMedCentralPubMed Kriegeskorte, N., Goebel, R., & Bandettini, P. (2006). Information-based functional brain mapping. Proceedings of the National Academy of Sciences of the United States of America, 103, 3863–3868.PubMedCentralPubMed
Zurück zum Zitat Kriegeskorte, N., Simmons, W. K., Bellgowan, P. S. F., & Baker, C. I. (2009). Circular analysis in systems neuroscience: the dangers of double dipping. Nature Neuroscience, 12, 535–540.PubMedCentralPubMed Kriegeskorte, N., Simmons, W. K., Bellgowan, P. S. F., & Baker, C. I. (2009). Circular analysis in systems neuroscience: the dangers of double dipping. Nature Neuroscience, 12, 535–540.PubMedCentralPubMed
Zurück zum Zitat Kriegeskorte, N., Lindquist, M. A., Nichols, T. E., Poldrack, R. A., & Vul, E. (2010). Everything you never wanted to know about circular analysis, but were afraid to ask. Journal of Cerebral Blood Flow & Metabolism, 30, 1551–1557. Kriegeskorte, N., Lindquist, M. A., Nichols, T. E., Poldrack, R. A., & Vul, E. (2010). Everything you never wanted to know about circular analysis, but were afraid to ask. Journal of Cerebral Blood Flow & Metabolism, 30, 1551–1557.
Zurück zum Zitat Krishnan, A., Williams, L. J., McIntosh, A. R., & Abdi, H. (2011). Partial Least Squares (PLS) methods for neuroimaging: A tutorial and review. NeuroImage, 56, 455–475.PubMed Krishnan, A., Williams, L. J., McIntosh, A. R., & Abdi, H. (2011). Partial Least Squares (PLS) methods for neuroimaging: A tutorial and review. NeuroImage, 56, 455–475.PubMed
Zurück zum Zitat Kwok, J. T. Y., & Tsang, I. W. H. (2004). The pre-image problem in kernel methods. Neural Networks, IEEE Transactions, 15, 1517–1525. Kwok, J. T. Y., & Tsang, I. W. H. (2004). The pre-image problem in kernel methods. Neural Networks, IEEE Transactions, 15, 1517–1525.
Zurück zum Zitat LaConte, S., Strother, S., Cherkassky, V., Anderson, J., & Hu, X. (2005). Support vector machines for temporal classification of block design fMRI data. NeuroImage, 26, 317.PubMed LaConte, S., Strother, S., Cherkassky, V., Anderson, J., & Hu, X. (2005). Support vector machines for temporal classification of block design fMRI data. NeuroImage, 26, 317.PubMed
Zurück zum Zitat Laird, A., Lancaster, J., & Fox, P. (2005a). BrainMap: the social evolution of a functional neuroimaging database. Neuroinformatics, 3, 65–78.PubMed Laird, A., Lancaster, J., & Fox, P. (2005a). BrainMap: the social evolution of a functional neuroimaging database. Neuroinformatics, 3, 65–78.PubMed
Zurück zum Zitat Laird, A. R., McMillan, K. M., Lancaster, J. L., Kochunov, P., Turkeltaub, P. E., Pardo, J. V., & Fox, P. T. (2005b). A comparison of label-based review and ALE meta-analysis in the Stroop task. Human Brain Mapping, 25, 6–21.PubMed Laird, A. R., McMillan, K. M., Lancaster, J. L., Kochunov, P., Turkeltaub, P. E., Pardo, J. V., & Fox, P. T. (2005b). A comparison of label-based review and ALE meta-analysis in the Stroop task. Human Brain Mapping, 25, 6–21.PubMed
Zurück zum Zitat Langs, G., Menze, B. H., Lashkari, D., & Golland, P. (2011). Detecting stable distributed patterns of brain activation using Gini contrast. NeuroImage, 56, 497–507.PubMedCentralPubMed Langs, G., Menze, B. H., Lashkari, D., & Golland, P. (2011). Detecting stable distributed patterns of brain activation using Gini contrast. NeuroImage, 56, 497–507.PubMedCentralPubMed
Zurück zum Zitat Lee, J., & Verleysen, M. (2007). Nonlinear Dimensionality Reduction. New York: USA, Springer Publishing Co. Lee, J., & Verleysen, M. (2007). Nonlinear Dimensionality Reduction. New York: USA, Springer Publishing Co.
Zurück zum Zitat Lim, L., Marquand, A., Cubillo, A. A., Smith, A. B., Chantiluke, K., Simmons, A., Mehta, M., & Rubia, K. (2013). Disorder-specific predictive classification of adolescents with Attention Deficit Hyperactivity Disorder (ADHD) relative to autism using structural magnetic resonance imaging. PLOS ONE, 8, e63660.PubMedCentralPubMed Lim, L., Marquand, A., Cubillo, A. A., Smith, A. B., Chantiluke, K., Simmons, A., Mehta, M., & Rubia, K. (2013). Disorder-specific predictive classification of adolescents with Attention Deficit Hyperactivity Disorder (ADHD) relative to autism using structural magnetic resonance imaging. PLOS ONE, 8, e63660.PubMedCentralPubMed
Zurück zum Zitat Linden, D. E. J. (2012). The challenges and promise of neuroimaging in psychiatry. Neuron, 73, 8–22.PubMed Linden, D. E. J. (2012). The challenges and promise of neuroimaging in psychiatry. Neuron, 73, 8–22.PubMed
Zurück zum Zitat Liu, M., Zhang, D., & Shen, D. (2012). Ensemble sparse classification of Alzheimer's disease. NeuroImage, 60, 1106–1116.PubMedCentralPubMed Liu, M., Zhang, D., & Shen, D. (2012). Ensemble sparse classification of Alzheimer's disease. NeuroImage, 60, 1106–1116.PubMedCentralPubMed
Zurück zum Zitat Lohmann, G., Volz, K. G., & Ullsperger, M. (2007). Using non-negative matrix factorization for single-trial analysis of fMRI data. NeuroImage, 37, 1148–1160.PubMed Lohmann, G., Volz, K. G., & Ullsperger, M. (2007). Using non-negative matrix factorization for single-trial analysis of fMRI data. NeuroImage, 37, 1148–1160.PubMed
Zurück zum Zitat Lopez, M., Ramirez, J., Garriz, J., Alvarez, I., Salas-Gonzalez, D., Segovia, F., Chaves, R., Padilla, P., & Gomez-Rao, M. (2011). Principal component analysis-based techniques and supervised classification schemes for the early detection of Alzheimer's disease. Neurocomputing, 74, 1260–1271. Lopez, M., Ramirez, J., Garriz, J., Alvarez, I., Salas-Gonzalez, D., Segovia, F., Chaves, R., Padilla, P., & Gomez-Rao, M. (2011). Principal component analysis-based techniques and supervised classification schemes for the early detection of Alzheimer's disease. Neurocomputing, 74, 1260–1271.
Zurück zum Zitat MacIntosh, A. R., Bookstei, F., Haxby, J., & Grady, C. (1996). Spatial pattern analysis of functional brain images using partial least squares. NeuroImage, 3, 143–157. MacIntosh, A. R., Bookstei, F., Haxby, J., & Grady, C. (1996). Spatial pattern analysis of functional brain images using partial least squares. NeuroImage, 3, 143–157.
Zurück zum Zitat Magnin, B., Mesrob, L., Kinkingnahun, S., Palagrini-Issac, M., Colliot, O., Sarazin, M., Dubois, B., Leharicy, S., & Benali, H. (2009). Support vector machine-based classification of Alzheimer's disease from whole-brain anatomical MRI. Neuroradiology, 51, 73–83.PubMed Magnin, B., Mesrob, L., Kinkingnahun, S., Palagrini-Issac, M., Colliot, O., Sarazin, M., Dubois, B., Leharicy, S., & Benali, H. (2009). Support vector machine-based classification of Alzheimer's disease from whole-brain anatomical MRI. Neuroradiology, 51, 73–83.PubMed
Zurück zum Zitat Marquand, A., Howard, M., Brammer, M., Chu, C., Coen, S., & Mourao-Miranda, J. (2010a). Quantitative prediction of subjective pain intensity from whole-brain fMRI data using Gaussian processes. NeuroImage, 49, 2178–2189.PubMed Marquand, A., Howard, M., Brammer, M., Chu, C., Coen, S., & Mourao-Miranda, J. (2010a). Quantitative prediction of subjective pain intensity from whole-brain fMRI data using Gaussian processes. NeuroImage, 49, 2178–2189.PubMed
Zurück zum Zitat Marquand, A., Howard, M., Brammer, M., Chu, C., Coen, S., & Mourao-Miranda, J. (2010b). Quantitative prediction of subjective pain intensity from whole-brain fMRI data using Gaussian processes. NeuroImage, 49, 2178–2189.PubMed Marquand, A., Howard, M., Brammer, M., Chu, C., Coen, S., & Mourao-Miranda, J. (2010b). Quantitative prediction of subjective pain intensity from whole-brain fMRI data using Gaussian processes. NeuroImage, 49, 2178–2189.PubMed
Zurück zum Zitat Marquand, A. F., De Simoni, S., O'Daly, O. G., Williams, S. C. R., Mourao-Miranda, J., & Mehta, M. A. (2011). Pattern classification of working memory networks reveals differential effects of methylphenidate, atomoxetine, and placebo in healthy volunteers. Neuropsychopharmacology, 36, 1237–1247.PubMedCentralPubMed Marquand, A. F., De Simoni, S., O'Daly, O. G., Williams, S. C. R., Mourao-Miranda, J., & Mehta, M. A. (2011). Pattern classification of working memory networks reveals differential effects of methylphenidate, atomoxetine, and placebo in healthy volunteers. Neuropsychopharmacology, 36, 1237–1247.PubMedCentralPubMed
Zurück zum Zitat Marquand, A. F., O'Daly, O. G., De Simoni, S., Alsop, D. C., Maguire, R. P., Williams, S. C. R., Zelaya, F. O., & Mehta, M. A. (2012). Dissociable effects of methylphenidate, atomoxetine and placebo on regional cerebral blood flow in healthy volunteers at rest: A multi-class pattern recognition approach. NeuroImage, 60, 1015–1024.PubMedCentralPubMed Marquand, A. F., O'Daly, O. G., De Simoni, S., Alsop, D. C., Maguire, R. P., Williams, S. C. R., Zelaya, F. O., & Mehta, M. A. (2012). Dissociable effects of methylphenidate, atomoxetine and placebo on regional cerebral blood flow in healthy volunteers at rest: A multi-class pattern recognition approach. NeuroImage, 60, 1015–1024.PubMedCentralPubMed
Zurück zum Zitat Martinez-Montes, E., Valdes-Sosa, P. A., Miwakeichi, F., Goldman, R. I., & Cohen, M. S. (2004). EEG/fMRI analysis by multiway partial least squares. NeuroImage, 22, 1023–34.PubMed Martinez-Montes, E., Valdes-Sosa, P. A., Miwakeichi, F., Goldman, R. I., & Cohen, M. S. (2004). EEG/fMRI analysis by multiway partial least squares. NeuroImage, 22, 1023–34.PubMed
Zurück zum Zitat McIntosh, A. R., & Lobaugh, N. J. (2004). Partial least squares analysis of neuroimaging data: applications and advances. NeuroImage, 23, 250–263. McIntosh, A. R., & Lobaugh, N. J. (2004). Partial least squares analysis of neuroimaging data: applications and advances. NeuroImage, 23, 250–263.
Zurück zum Zitat McIntosh, A. R., & Misic, B. (2013). Multivariate statistical analyses for neuroimaging data. Annual Review of Psychology, 64, 499–525.PubMed McIntosh, A. R., & Misic, B. (2013). Multivariate statistical analyses for neuroimaging data. Annual Review of Psychology, 64, 499–525.PubMed
Zurück zum Zitat Menzies, L., Achard, S., Chamberlain, S. R., Fineberg, N., Chen, C.-H., delCampo, N., Sahakian, B. J., Robbins, T. W., & Bullmore, E. (2007). Neurocognitive endophenotypes of obsessive-compulsive disorder. Brain, 130, 3223–3236.PubMed Menzies, L., Achard, S., Chamberlain, S. R., Fineberg, N., Chen, C.-H., delCampo, N., Sahakian, B. J., Robbins, T. W., & Bullmore, E. (2007). Neurocognitive endophenotypes of obsessive-compulsive disorder. Brain, 130, 3223–3236.PubMed
Zurück zum Zitat Mesrob, L., Magnin, B., Colliot, O., Sarazin, M., Hahn-Barma, V., Dubois, B., Gallinari, P., Leharicy, S., Kinkingnhun, S., and Benali, H. (2008). Identification of Atrophy Patterns in Alzheimers Disease Based on SVM Feature Selection and Anatomical Parcellation. Medical Imaging and Augmented Reality, 5128, 124–132. Mesrob, L., Magnin, B., Colliot, O., Sarazin, M., Hahn-Barma, V., Dubois, B., Gallinari, P., Leharicy, S., Kinkingnhun, S., and Benali, H. (2008). Identification of Atrophy Patterns in Alzheimers Disease Based on SVM Feature Selection and Anatomical Parcellation. Medical Imaging and Augmented Reality, 5128, 124–132.
Zurück zum Zitat Misaki, M., Kim, Y., Bandettini, P. A., & Kriegeskorte, N. (2010). Comparison of multivariate classifiers and response normalizations for pattern-information fMRI. NeuroImage, 53, 103–118.PubMedCentralPubMed Misaki, M., Kim, Y., Bandettini, P. A., & Kriegeskorte, N. (2010). Comparison of multivariate classifiers and response normalizations for pattern-information fMRI. NeuroImage, 53, 103–118.PubMedCentralPubMed
Zurück zum Zitat Mitchell, T. M. (2011). From journal articles to computational models: a new automated tool. Nature methods, 8, 627.PubMed Mitchell, T. M. (2011). From journal articles to computational models: a new automated tool. Nature methods, 8, 627.PubMed
Zurück zum Zitat Mitchell, T. M., Hutchinson, R., Niculescu, R. S., Pereira, F., Wang, X., Just, M., & Newman, S. (2004). Learning to decode cognitive states from brain images. Machine Learning, 57, 145–175. Mitchell, T. M., Hutchinson, R., Niculescu, R. S., Pereira, F., Wang, X., Just, M., & Newman, S. (2004). Learning to decode cognitive states from brain images. Machine Learning, 57, 145–175.
Zurück zum Zitat Mourao-Miranda, J., Bokde, A. L. W., Born, C., Hampel, H., & Stetter, M. (2005). Classifying brain states and determining the discriminating activation patterns: Support Vector Machine on functional MRI data. NeuroImage, 28, 980–995.PubMed Mourao-Miranda, J., Bokde, A. L. W., Born, C., Hampel, H., & Stetter, M. (2005). Classifying brain states and determining the discriminating activation patterns: Support Vector Machine on functional MRI data. NeuroImage, 28, 980–995.PubMed
Zurück zum Zitat Mourao-Miranda, J., Reynaud, E., McGlone, F., Calvert, G., & Brammer, M. (2006). The impact of temporal compression and space selection on SVM analysis of single-subject and multi-subject fMRI data. NeuroImage, 33, 1055–1065.PubMed Mourao-Miranda, J., Reynaud, E., McGlone, F., Calvert, G., & Brammer, M. (2006). The impact of temporal compression and space selection on SVM analysis of single-subject and multi-subject fMRI data. NeuroImage, 33, 1055–1065.PubMed
Zurück zum Zitat Mourao-Miranda, J., Oliveira, L., Ladouceur, C. D., Marquand, A., Brammer, M., Birmaher, B., Axelson, D., & Phillips, M. L. (2012). Pattern recognition and functional neuroimaging help to discriminate healthy adolescents at risk for mood disorders from low risk adolescents. Plos One, 7, e29482.PubMedCentralPubMed Mourao-Miranda, J., Oliveira, L., Ladouceur, C. D., Marquand, A., Brammer, M., Birmaher, B., Axelson, D., & Phillips, M. L. (2012). Pattern recognition and functional neuroimaging help to discriminate healthy adolescents at risk for mood disorders from low risk adolescents. Plos One, 7, e29482.PubMedCentralPubMed
Zurück zum Zitat Mwangi, B., Ebmeier, K., Matthews, K., & Douglas Steele, J. (2012a). Multi-centre diagnostic classification of individual structural neuroimaging scans from patients with major depressive disorder. Brain: A Journal of Neurology, 135, 1508–1521. Mwangi, B., Ebmeier, K., Matthews, K., & Douglas Steele, J. (2012a). Multi-centre diagnostic classification of individual structural neuroimaging scans from patients with major depressive disorder. Brain: A Journal of Neurology, 135, 1508–1521.
Zurück zum Zitat Mwangi, B., Matthews, K., & Steele, J. (2012b). Prediction of illness severity in patients with major depression using structural MR brain scans. Journal of Magnetic Resonance Imaging, 35, 64–71.PubMed Mwangi, B., Matthews, K., & Steele, J. (2012b). Prediction of illness severity in patients with major depression using structural MR brain scans. Journal of Magnetic Resonance Imaging, 35, 64–71.PubMed
Zurück zum Zitat Mwangi, B., Hasan, K. M., and Soares, J. C. (2013). Prediction of individual subject's age across the human lifespan using diffusion tensor imaging: A machine learning approach. NeuroImage, 75, 58–67. Mwangi, B., Hasan, K. M., and Soares, J. C. (2013). Prediction of individual subject's age across the human lifespan using diffusion tensor imaging: A machine learning approach. NeuroImage, 75, 58–67.
Zurück zum Zitat Nester, P. G., O'Donnell, B. F., Mccarley, R. W., Niznikeiwicz, M., Barnard, J., Shen, Z. J., Bookstein, F. L., & Shenton, M. E. (2002). A new statistical method for testing hypotheses of neuropsychological/MRI relationships in schizophrenia: partial least squares analysis. Schizophrenia Research, 53, 57–66. Nester, P. G., O'Donnell, B. F., Mccarley, R. W., Niznikeiwicz, M., Barnard, J., Shen, Z. J., Bookstein, F. L., & Shenton, M. E. (2002). A new statistical method for testing hypotheses of neuropsychological/MRI relationships in schizophrenia: partial least squares analysis. Schizophrenia Research, 53, 57–66.
Zurück zum Zitat Nho, K., Shen, L., Kim, S., Risacher, S. L., West, J. D., Foroud, T., Jack, C. R., Weiner, M. W., & Saykin, A. J. (2010). Automatic prediction of conversion from mild cognitive impairment to probable alzheimer's disease using structural magnetic resonance imaging. AMIA Annual Symposium Proceedings/AMIA Symposium AMIA Symposium, 2010, 542–546.PubMedCentralPubMed Nho, K., Shen, L., Kim, S., Risacher, S. L., West, J. D., Foroud, T., Jack, C. R., Weiner, M. W., & Saykin, A. J. (2010). Automatic prediction of conversion from mild cognitive impairment to probable alzheimer's disease using structural magnetic resonance imaging. AMIA Annual Symposium Proceedings/AMIA Symposium AMIA Symposium, 2010, 542–546.PubMedCentralPubMed
Zurück zum Zitat Norman, K. A., Polyn, S. M., Detre, G. J., & Haxby, J. V. (2006). Beyond mind-reading: multi-voxel pattern analysis of fMRI data. Trends in Cognitive Sciences, 10, 424–430.PubMed Norman, K. A., Polyn, S. M., Detre, G. J., & Haxby, J. V. (2006). Beyond mind-reading: multi-voxel pattern analysis of fMRI data. Trends in Cognitive Sciences, 10, 424–430.PubMed
Zurück zum Zitat Ogutu, J. O., Schulz-Streeck, T., and Piepho, H. P. (2012). Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions. Paper presented at: BMC proceedings (Springer). Ogutu, J. O., Schulz-Streeck, T., and Piepho, H. P. (2012). Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions. Paper presented at: BMC proceedings (Springer).
Zurück zum Zitat Orru, G., Pettersson-Yeo, W., Marquand, A. F., Sartori, G., & Mechelli, A. (2012). Using support vector machine to identify imaging biomarkers of neurological and psychiatric disease: A critical review. Neuroscience And Biobehavioral Reviews, 36, 1140–1152.PubMed Orru, G., Pettersson-Yeo, W., Marquand, A. F., Sartori, G., & Mechelli, A. (2012). Using support vector machine to identify imaging biomarkers of neurological and psychiatric disease: A critical review. Neuroscience And Biobehavioral Reviews, 36, 1140–1152.PubMed
Zurück zum Zitat Penny, W., Friston, K., Ashburner, J., and Nicols, T. (2007). Statistical parametric mapping: The Analysis of functional Brain images. London: Academic Press Penny, W., Friston, K., Ashburner, J., and Nicols, T. (2007). Statistical parametric mapping: The Analysis of functional Brain images. London: Academic Press
Zurück zum Zitat Pereira, F., Mitchell, T., & Botvinick, M. (2009). Machine learning classifiers and fMRI: A tutorial overview. NeuroImage Mathematics in Brain Imaging, 45, S199–S209. Pereira, F., Mitchell, T., & Botvinick, M. (2009). Machine learning classifiers and fMRI: A tutorial overview. NeuroImage Mathematics in Brain Imaging, 45, S199–S209.
Zurück zum Zitat Radulescu, A. R., & Mujica-Parodi, L. R. (2009). A principal component network analysis of prefrontal-limbic functional magnetic resonance imaging time series in schizophrenia patients and healthy controls. Psychiatry Research, 174, 184–194.PubMedCentralPubMed Radulescu, A. R., & Mujica-Parodi, L. R. (2009). A principal component network analysis of prefrontal-limbic functional magnetic resonance imaging time series in schizophrenia patients and healthy controls. Psychiatry Research, 174, 184–194.PubMedCentralPubMed
Zurück zum Zitat Rao, A., Lee, Y., Gass, A., and Monsch, A. (2011). Classification of Alzheimer's Disease from structural MRI using sparse logistic regression with optional spatial regularization. Paper presented at: Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE (IEEE). Rao, A., Lee, Y., Gass, A., and Monsch, A. (2011). Classification of Alzheimer's Disease from structural MRI using sparse logistic regression with optional spatial regularization. Paper presented at: Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE (IEEE).
Zurück zum Zitat Rasmussen, C., and Williams, C. (2006). Gaussian Processes for Machine Learning MIT Press Rasmussen, C., and Williams, C. (2006). Gaussian Processes for Machine Learning MIT Press
Zurück zum Zitat Rasmussen, P. M., Madsen, K. H., Lund, T. E., & Hansen, L. K. (2011). Visualization of nonlinear kernel models in neuroimaging by sensitivity maps. NeuroImage, 55, 1120–1131.PubMed Rasmussen, P. M., Madsen, K. H., Lund, T. E., & Hansen, L. K. (2011). Visualization of nonlinear kernel models in neuroimaging by sensitivity maps. NeuroImage, 55, 1120–1131.PubMed
Zurück zum Zitat Rasmussen, P. M., Abrahamsen, T. J., Madsen, K. H., & Hansen, L. K. (2012). Nonlinear denoising and analysis of neuroimages with kernel principal component analysis and pre-image estimation. NeuroImage, 60, 1807–1818.PubMed Rasmussen, P. M., Abrahamsen, T. J., Madsen, K. H., & Hansen, L. K. (2012). Nonlinear denoising and analysis of neuroimages with kernel principal component analysis and pre-image estimation. NeuroImage, 60, 1807–1818.PubMed
Zurück zum Zitat Rish, I., Cecchi, G., Baliki, M., & Apkarian, A. (2010). Sparse regression models of pain perception. Brain Informatics, 212–223. Rish, I., Cecchi, G., Baliki, M., & Apkarian, A. (2010). Sparse regression models of pain perception. Brain Informatics, 212–223.
Zurück zum Zitat Rizk-Jackson, A., Stoffers, D., Sheldon, S., Kuperman, J., Dale, A., Goldstein, J., Corey-Bloom, J., Poldrack, R. A., & Aron, A. R. (2011). Evaluating imaging biomarkers for neurodegeneration in pre-symptomatic Huntington's disease using machine learning techniques. NeuroImage, 56, 788–796.PubMed Rizk-Jackson, A., Stoffers, D., Sheldon, S., Kuperman, J., Dale, A., Goldstein, J., Corey-Bloom, J., Poldrack, R. A., & Aron, A. R. (2011). Evaluating imaging biomarkers for neurodegeneration in pre-symptomatic Huntington's disease using machine learning techniques. NeuroImage, 56, 788–796.PubMed
Zurück zum Zitat Ryali, S., Supekar, K., Abrams, D. A., & Menon, V. (2010). Sparse logistic regression for whole brain classification of fMRI data. NeuroImage, 51, 752.PubMedCentralPubMed Ryali, S., Supekar, K., Abrams, D. A., & Menon, V. (2010). Sparse logistic regression for whole brain classification of fMRI data. NeuroImage, 51, 752.PubMedCentralPubMed
Zurück zum Zitat Saeys, Y., Inza, I., and Larranaga, P. (2007). A review of feature selection techniques in bioinformatics. Bioinformatics, 23(19), 2507–2517. Saeys, Y., Inza, I., and Larranaga, P. (2007). A review of feature selection techniques in bioinformatics. Bioinformatics, 23(19), 2507–2517.
Zurück zum Zitat Salimi-Khorshidi, G., Smith, S. M., Keltner, J. R., Wager, T. D., & Nichols, T. E. (2009). Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies. NeuroImage, 45, 810–823.PubMed Salimi-Khorshidi, G., Smith, S. M., Keltner, J. R., Wager, T. D., & Nichols, T. E. (2009). Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies. NeuroImage, 45, 810–823.PubMed
Zurück zum Zitat Sato, J. R., Hoexter, M. Q., Fujita, A., and Rohde, L. A. (2012). Evaluation of pattern recognition and feature extraction methods in ADHD prediction. Frontiers in Systems Neuroscience, 6(68). doi:10.3389/fnsys.2012.00068. Sato, J. R., Hoexter, M. Q., Fujita, A., and Rohde, L. A. (2012). Evaluation of pattern recognition and feature extraction methods in ADHD prediction. Frontiers in Systems Neuroscience, 6(68). doi:10.​3389/​fnsys.​2012.​00068.
Zurück zum Zitat Scholkopf, B., & Smola, A. (2002). Learning with Kernels: Support vector machines, regularization, optimization, and beyond. Cambridge: MIT Press. Scholkopf, B., & Smola, A. (2002). Learning with Kernels: Support vector machines, regularization, optimization, and beyond. Cambridge: MIT Press.
Zurück zum Zitat Schrouff, J., Rosa, M. J., Rondina, J., Marquand, A., Chu, C., Ashburner, J., Phillips, C., Richiardi, J., and Mourao-Miranda, J. (2013). PRoNTo: Pattern Recognition for Neuroimaging Toolbox. Neuroinformatics, 11(3), 319–339. doi:10.1007/s12021-013-9178-1. Schrouff, J., Rosa, M. J., Rondina, J., Marquand, A., Chu, C., Ashburner, J., Phillips, C., Richiardi, J., and Mourao-Miranda, J. (2013). PRoNTo: Pattern Recognition for Neuroimaging Toolbox. Neuroinformatics, 11(3), 319–339. doi:10.​1007/​s12021-013-9178-1.
Zurück zum Zitat Scott, D. (1992). Multivariate density estimation: Theory, practice and visualization. New York: Wiley. Scott, D. (1992). Multivariate density estimation: Theory, practice and visualization. New York: Wiley.
Zurück zum Zitat Shen, L., Kim, S., Qi, Y., Inlow, M., Swaminathan, S., Nho, K., Wan, J., Risacher, S., Shaw, L., and Trojanowski, J. (2011). Identifying neuroimaging and proteomic biomarkers for MCI and AD via the elastic net. Multimodal Brain Image Analysis, 7012, 27–34. Shen, L., Kim, S., Qi, Y., Inlow, M., Swaminathan, S., Nho, K., Wan, J., Risacher, S., Shaw, L., and Trojanowski, J. (2011). Identifying neuroimaging and proteomic biomarkers for MCI and AD via the elastic net. Multimodal Brain Image Analysis, 7012, 27–34.
Zurück zum Zitat Sheskin, D. (2004). Handbook of parametric and nonparametric statistical procedures. Florida: Chapman & Hall. Sheskin, D. (2004). Handbook of parametric and nonparametric statistical procedures. Florida: Chapman & Hall.
Zurück zum Zitat Shi, W., Lee, K. E., and Wahba, G. (2007). Detecting disease-causing genes by LASSO-Patternsearch algorithm. Paper presented at: BMC proceedings, (BioMed Central Ltd). Shi, W., Lee, K. E., and Wahba, G. (2007). Detecting disease-causing genes by LASSO-Patternsearch algorithm. Paper presented at: BMC proceedings, (BioMed Central Ltd).
Zurück zum Zitat Sidhu, G. S., Asgarian, N., Greiner, R., & Brown, M. R. G. (2012). Kernel principal component analysis for dimensionality reduction in fMRI-based diagnosis of ADHD. Frontiers in Systems Neuroscience, 6, 74.PubMedCentralPubMed Sidhu, G. S., Asgarian, N., Greiner, R., & Brown, M. R. G. (2012). Kernel principal component analysis for dimensionality reduction in fMRI-based diagnosis of ADHD. Frontiers in Systems Neuroscience, 6, 74.PubMedCentralPubMed
Zurück zum Zitat Stone, J. (2004). Independent component analysis. Cambridge: MIT Press. Stone, J. (2004). Independent component analysis. Cambridge: MIT Press.
Zurück zum Zitat Stonnington, C. M., Chu, C., Kloppel, S., Jack, C. R., Jr., Ashburner, J., & Frackowiak, R. S. J. (2010). Predicting clinical scores from magnetic resonance scans in Alzheimer's disease. NeuroImage, 51, 1405–1413.PubMedCentralPubMed Stonnington, C. M., Chu, C., Kloppel, S., Jack, C. R., Jr., Ashburner, J., & Frackowiak, R. S. J. (2010). Predicting clinical scores from magnetic resonance scans in Alzheimer's disease. NeuroImage, 51, 1405–1413.PubMedCentralPubMed
Zurück zum Zitat Strother, S. C., Anderson, J., Hansen, L. K., Kjems, U., Kustra, R., Sidtis, J., Frutiger, S., Muley, S., LaConte, S., & Rottenberg, D. (2002). The quantitative evaluation of functional neuroimaging experiments: The NPAIRS data analysis framework. NeuroImage, 15, 747–771.PubMed Strother, S. C., Anderson, J., Hansen, L. K., Kjems, U., Kustra, R., Sidtis, J., Frutiger, S., Muley, S., LaConte, S., & Rottenberg, D. (2002). The quantitative evaluation of functional neuroimaging experiments: The NPAIRS data analysis framework. NeuroImage, 15, 747–771.PubMed
Zurück zum Zitat Sui, J., Adali, T., Yu, Q., Chen, J., & Calhoun, V. D. (2012). A review of multivariate methods for multimodal fusion of brain imaging data. Journal of Neuroscience Methods, 204, 68–81.PubMedCentralPubMed Sui, J., Adali, T., Yu, Q., Chen, J., & Calhoun, V. D. (2012). A review of multivariate methods for multimodal fusion of brain imaging data. Journal of Neuroscience Methods, 204, 68–81.PubMedCentralPubMed
Zurück zum Zitat Tagliazucchi, E., von Wegner, F., Morzelewski, A., Borisov, S., Jahnke, K., and Laufs, H. (2012). Automatic sleep staging using fMRI functional connectivity data. Neuroimage, 63(1) 63–72. Tagliazucchi, E., von Wegner, F., Morzelewski, A., Borisov, S., Jahnke, K., and Laufs, H. (2012). Automatic sleep staging using fMRI functional connectivity data. Neuroimage, 63(1) 63–72.
Zurück zum Zitat Theodoridis, S., & Koutroumbas, K. (2009). Pattern Recognition (4th ed.). California: Elseiver. Theodoridis, S., & Koutroumbas, K. (2009). Pattern Recognition (4th ed.). California: Elseiver.
Zurück zum Zitat Thirion, B., & Faugeras, O. (2003). Dynamical components analysis of fMRI data through kernel PCA. NeuroImage, 20, 34–49.PubMed Thirion, B., & Faugeras, O. (2003). Dynamical components analysis of fMRI data through kernel PCA. NeuroImage, 20, 34–49.PubMed
Zurück zum Zitat Tibshirani, R. (1996). Regression shrinkage and selection via the lasso. Journal of the Royal Statistical Society Series B (Methodological), 267–288. Tibshirani, R. (1996). Regression shrinkage and selection via the lasso. Journal of the Royal Statistical Society Series B (Methodological), 267–288.
Zurück zum Zitat Tibshirani, R. (2011). Regression shrinkage and selection via the lasso: a retrospective. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 73, 273–282. Tibshirani, R. (2011). Regression shrinkage and selection via the lasso: a retrospective. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 73, 273–282.
Zurück zum Zitat Tipping, M. (2001). Sparse Bayesian Learning and the relevance vector machine. J ournal of Machine Learning Research, 1(211), 244. Tipping, M. (2001). Sparse Bayesian Learning and the relevance vector machine. J ournal of Machine Learning Research, 1(211), 244.
Zurück zum Zitat Toussaint, P. J., Perlbarg, V., Bellec, P., Desarnaud, S., Lacomblez, L., Doyon, J., Habert, M. O., and Benali, H. (2012). Resting state FDG-PET functional connectivity as an early biomarker of Alzheimer's disease using conjoint univariate and independent component analyses. NeuroImage, 63(2) 936–946. Toussaint, P. J., Perlbarg, V., Bellec, P., Desarnaud, S., Lacomblez, L., Doyon, J., Habert, M. O., and Benali, H. (2012). Resting state FDG-PET functional connectivity as an early biomarker of Alzheimer's disease using conjoint univariate and independent component analyses. NeuroImage, 63(2) 936–946.
Zurück zum Zitat Tseng, P., & Yun, S. (2009). Block-coordinate gradient descent method for linearly constrained nonsmooth separable optimization. Journal of optimization theory and applications, 140, 513–535. Tseng, P., & Yun, S. (2009). Block-coordinate gradient descent method for linearly constrained nonsmooth separable optimization. Journal of optimization theory and applications, 140, 513–535.
Zurück zum Zitat Valente, G., De Martino, F., Esposito, F., Goebel, R., & Formisano, E. (2011). Predicting subject-driven actions and sensory experience in a virtual world with Relevance Vector Machine Regression of fMRI data. NeuroImage, 56, 651–661.PubMed Valente, G., De Martino, F., Esposito, F., Goebel, R., & Formisano, E. (2011). Predicting subject-driven actions and sensory experience in a virtual world with Relevance Vector Machine Regression of fMRI data. NeuroImage, 56, 651–661.PubMed
Zurück zum Zitat Van De Ville, D., & Lee, S.-W. (2012). Brain decoding: Opportunities and challenges for pattern recognition. Pattern Recognition Brain Decoding, 45, 2033–2034. Van De Ville, D., & Lee, S.-W. (2012). Brain decoding: Opportunities and challenges for pattern recognition. Pattern Recognition Brain Decoding, 45, 2033–2034.
Zurück zum Zitat Vapnik, V. (1999). The nature of statistical learning theory-2nd edition. New York: Springer. Vapnik, V. (1999). The nature of statistical learning theory-2nd edition. New York: Springer.
Zurück zum Zitat Vounou, M., Janousova, E., Wolz, R., Stein, J. L., Thompson, P. M., Rueckert, D., and Montana, G. (2011). Sparse reduced-rank regression detects genetic associations with voxel-wise longitudinal phenotypes in Alzheimer's disease. Neuroimage, 60(1) 700–716. Vounou, M., Janousova, E., Wolz, R., Stein, J. L., Thompson, P. M., Rueckert, D., and Montana, G. (2011). Sparse reduced-rank regression detects genetic associations with voxel-wise longitudinal phenotypes in Alzheimer's disease. Neuroimage, 60(1) 700–716.
Zurück zum Zitat Wager, T. D., Lindquist, M., & Kaplan, L. (2007). Meta-analysis of functional neuroimaging data: current and future directions. Social Cognitive and Affective Neuroscience, 2, 150–158.PubMedCentralPubMed Wager, T. D., Lindquist, M., & Kaplan, L. (2007). Meta-analysis of functional neuroimaging data: current and future directions. Social Cognitive and Affective Neuroscience, 2, 150–158.PubMedCentralPubMed
Zurück zum Zitat Wan, J., Kim, S., Inlow, M., Nho, K., Swaminathan, S., Risacher, S., Fang, S., Weiner, M., Beg, M., & Wang, L. (2011). Hippocampal surface mapping of genetic risk factors in AD via sparse learning models. Medical Image Computing and Computer-Assisted Intervention, MICCAI, 2011, 376–383. Wan, J., Kim, S., Inlow, M., Nho, K., Swaminathan, S., Risacher, S., Fang, S., Weiner, M., Beg, M., & Wang, L. (2011). Hippocampal surface mapping of genetic risk factors in AD via sparse learning models. Medical Image Computing and Computer-Assisted Intervention, MICCAI, 2011, 376–383.
Zurück zum Zitat Wang, Y., Fan, Y., Bhatt, P., & Davatzikos, C. (2010). High-dimensional pattern regression using machine learning: from medical images to continuous clinical variables. NeuroImage, 50, 1519–1535.PubMedCentralPubMed Wang, Y., Fan, Y., Bhatt, P., & Davatzikos, C. (2010). High-dimensional pattern regression using machine learning: from medical images to continuous clinical variables. NeuroImage, 50, 1519–1535.PubMedCentralPubMed
Zurück zum Zitat Wang, X., Jiao, Y., and Lu, Z. (2011). Discriminative analysis of resting-state brain functional connectivity patterns of Attention-Deficit Hyperactivity Disorder using Kernel Principal Component Analysis. Paper presented at: Fuzzy Systems and Knowledge Discovery (FSKD), 2011 Eighth International Conference on (IEEE). Wang, X., Jiao, Y., and Lu, Z. (2011). Discriminative analysis of resting-state brain functional connectivity patterns of Attention-Deficit Hyperactivity Disorder using Kernel Principal Component Analysis. Paper presented at: Fuzzy Systems and Knowledge Discovery (FSKD), 2011 Eighth International Conference on (IEEE).
Zurück zum Zitat Wee, C.-Y., Yap, P.-T., Li, W., Denny, K., Browndyke, J. N., Potter, G. G., Welsh-Bohmer, K. A., Wang, L., & Shen, D. (2011). Enriched white matter connectivity networks for accurate identification of MCI patients. NeuroImage, 54, 1812–1822.PubMedCentralPubMed Wee, C.-Y., Yap, P.-T., Li, W., Denny, K., Browndyke, J. N., Potter, G. G., Welsh-Bohmer, K. A., Wang, L., & Shen, D. (2011). Enriched white matter connectivity networks for accurate identification of MCI patients. NeuroImage, 54, 1812–1822.PubMedCentralPubMed
Zurück zum Zitat Wee, C.-Y., Yap, P.-T., Zhang, D., Denny, K., Browndyke, J. N., Potter, G. G., Welsh-Bohmer, K. A., Wang, L., & Shen, D. (2012). Identification of MCI individuals using structural and functional connectivity networks. NeuroImage, 59, 2045–2056.PubMedCentralPubMed Wee, C.-Y., Yap, P.-T., Zhang, D., Denny, K., Browndyke, J. N., Potter, G. G., Welsh-Bohmer, K. A., Wang, L., & Shen, D. (2012). Identification of MCI individuals using structural and functional connectivity networks. NeuroImage, 59, 2045–2056.PubMedCentralPubMed
Zurück zum Zitat Wold, S., Sjostrom, M., & Eriksson, L. (2001). PLS-regression: a basic tool of chemometrics. Chemometrics and Intelligent Laboratory Systems, 58, 109–130. Wold, S., Sjostrom, M., & Eriksson, L. (2001). PLS-regression: a basic tool of chemometrics. Chemometrics and Intelligent Laboratory Systems, 58, 109–130.
Zurück zum Zitat Yan, J., Risacher, S., Kim, S., Simon, J., Li, T., Wan, J., Wang, H., Huang, H., Saykin, A., and Shen, L. (2012). Multimodal Neuroimaging Predictors for Cognitive Performance Using Structured Sparse Learning. Multimodal Brain Image Analysis, 7509, 1–17. Yan, J., Risacher, S., Kim, S., Simon, J., Li, T., Wan, J., Wang, H., Huang, H., Saykin, A., and Shen, L. (2012). Multimodal Neuroimaging Predictors for Cognitive Performance Using Structured Sparse Learning. Multimodal Brain Image Analysis, 7509, 1–17.
Zurück zum Zitat Yang, H., Liu, J., Sui, J., Pearlson, G., and Calhoun, V. D. (2010). A hybrid machine learning method for fusing fMRI and genetic data: combining both improves classification of schizophrenia. Frontiers in human neuroscience, 4. doi:10.3389/fnhum.2010.00192. Yang, H., Liu, J., Sui, J., Pearlson, G., and Calhoun, V. D. (2010). A hybrid machine learning method for fusing fMRI and genetic data: combining both improves classification of schizophrenia. Frontiers in human neuroscience, 4. doi:10.​3389/​fnhum.​2010.​00192.
Zurück zum Zitat Yarkoni, T., Poldrack, R. A., Nichols, T. E., Van Essen, D. C., & Wager, T. D. (2011). Large-scale automated synthesis of human functional neuroimaging data. Nature methods, 8, 665–670.PubMedCentralPubMed Yarkoni, T., Poldrack, R. A., Nichols, T. E., Van Essen, D. C., & Wager, T. D. (2011). Large-scale automated synthesis of human functional neuroimaging data. Nature methods, 8, 665–670.PubMedCentralPubMed
Zurück zum Zitat Yoon, U., Lee, J. M., Im, K., Shin, Y. W., Cho, B. H., Kim, I. Y., Kwon, J. S., & Kim, S. I. (2007). Pattern classification using principal components of cortical thickness and its discriminative pattern in schizophrenia. NeuroImage, 34, 1405–1415.PubMed Yoon, U., Lee, J. M., Im, K., Shin, Y. W., Cho, B. H., Kim, I. Y., Kwon, J. S., & Kim, S. I. (2007). Pattern classification using principal components of cortical thickness and its discriminative pattern in schizophrenia. NeuroImage, 34, 1405–1415.PubMed
Zurück zum Zitat Yoon, J. H., Tamir, D., Minzenberg, M. J., Ragland, J. D., Ursu, S., and Carter, C. S. (2008). Multivariate Pattern Analysis of Functional Magnetic Resonance Imaging Data Reveals Deficits in Distributed Representations in Schizophrenia. Biological Psychiatry, 64(12) 1035–1041. Yoon, J. H., Tamir, D., Minzenberg, M. J., Ragland, J. D., Ursu, S., and Carter, C. S. (2008). Multivariate Pattern Analysis of Functional Magnetic Resonance Imaging Data Reveals Deficits in Distributed Representations in Schizophrenia. Biological Psychiatry, 64(12) 1035–1041.
Zurück zum Zitat Zeng, L.-L., Shen, H., Liu, L., Wang, L., Li, B., Fang, P., Zhou, Z., Li, Y., & Hu, D. (2012). Identifying major depression using whole-brain functional connectivity: a multivariate pattern analysis. Brain, 135, 1498–1507. doi:10.1093/brain/aws059.PubMed Zeng, L.-L., Shen, H., Liu, L., Wang, L., Li, B., Fang, P., Zhou, Z., Li, Y., & Hu, D. (2012). Identifying major depression using whole-brain functional connectivity: a multivariate pattern analysis. Brain, 135, 1498–1507. doi:10.​1093/​brain/​aws059.PubMed
Zurück zum Zitat Zhang, D., Wang, Y., Zhou, L., Yuan, H., & Shen, D. (2011a). Multimodal classification of Alzheimer's disease and mild cognitive impairment. NeuroImage, 55, 856–867.PubMedCentralPubMed Zhang, D., Wang, Y., Zhou, L., Yuan, H., & Shen, D. (2011a). Multimodal classification of Alzheimer's disease and mild cognitive impairment. NeuroImage, 55, 856–867.PubMedCentralPubMed
Zurück zum Zitat Zhang, D., Wang, Y., Zhou, L., Yuan, H., & Shen, D. (2011b). Multimodal classification of Alzheimer's disease and mild cognitive impairment. NeuroImage, 55, 856–867.PubMedCentralPubMed Zhang, D., Wang, Y., Zhou, L., Yuan, H., & Shen, D. (2011b). Multimodal classification of Alzheimer's disease and mild cognitive impairment. NeuroImage, 55, 856–867.PubMedCentralPubMed
Zurück zum Zitat Zhu, C. Z., Zang, Y. F., Liang, M., Tian, L. X., He, Y., Li, X. B., Sui, M. Q., Wang, Y. F., & Jiang, T. Z. (2005). Discriminative analysis of brain function at resting-state for attention-deficit/hyperactivity disorder. Medical Image Computing and Computer-Assisted Intervention: MICCAI International Conference On Medical Image Computing And Computer-Assisted Intervention, 8, 468–475. Zhu, C. Z., Zang, Y. F., Liang, M., Tian, L. X., He, Y., Li, X. B., Sui, M. Q., Wang, Y. F., & Jiang, T. Z. (2005). Discriminative analysis of brain function at resting-state for attention-deficit/hyperactivity disorder. Medical Image Computing and Computer-Assisted Intervention: MICCAI International Conference On Medical Image Computing And Computer-Assisted Intervention, 8, 468–475.
Zurück zum Zitat Zhu, C. Z., Zang, Y. F., Cao, Q. J., Yan, C. G., He, Y., Jiang, T. Z., Sui, M. Q., & Wang, Y. F. (2008). Fisher discriminative analysis of resting-state brain function for attention-deficit/hyperactivity disorder. NeuroImage, 40, 110–120.PubMed Zhu, C. Z., Zang, Y. F., Cao, Q. J., Yan, C. G., He, Y., Jiang, T. Z., Sui, M. Q., & Wang, Y. F. (2008). Fisher discriminative analysis of resting-state brain function for attention-deficit/hyperactivity disorder. NeuroImage, 40, 110–120.PubMed
Zurück zum Zitat Ziegler, G., Dahnke, R., Winkler, A. D., & Gaser, C. (2013). Partial least squares correlation of multivariate cognitive abilities and local brain structure in children and adolescents. NeuroImage, 82, 284–294.PubMed Ziegler, G., Dahnke, R., Winkler, A. D., & Gaser, C. (2013). Partial least squares correlation of multivariate cognitive abilities and local brain structure in children and adolescents. NeuroImage, 82, 284–294.PubMed
Zurück zum Zitat Zou, H., & Hastie, T. (2005). Regularization and variable selection via the elastic net. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 67, 301–320. Zou, H., & Hastie, T. (2005). Regularization and variable selection via the elastic net. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 67, 301–320.
Metadaten
Titel
A Review of Feature Reduction Techniques in Neuroimaging
verfasst von
Benson Mwangi
Tian Siva Tian
Jair C. Soares
Publikationsdatum
01.04.2014
Verlag
Springer US
Erschienen in
Neuroinformatics / Ausgabe 2/2014
Print ISSN: 1539-2791
Elektronische ISSN: 1559-0089
DOI
https://doi.org/10.1007/s12021-013-9204-3

Weitere Artikel der Ausgabe 2/2014

Neuroinformatics 2/2014 Zur Ausgabe