Abstract
The complete chloroplast genome of Sinadoxa corydalifolia is determined in this study. This is the first study to report the complete chloroplast genome for the family Adoxaceae. The estimated size of the S. corydalifolia plastome is 157,074 bp. This circular molecule has a typical quadripartite structure containing a large single copy region (LSC) of 86,430 bp, a small single copy region (SSC) of 18,668 bp, and two inverted repeat regions (IRs) of 25,988 bp. There are 118 unique genes, 17 of which are duplicated in IR regions. Of all these genes, there are 86 protein-coding genes (six duplicated in IR regions), 41tRNA genes (seven duplicated in IR regions) and eight rRNA genes (four duplicated in IR regions). The overall AT content of S. corydalifolia cp genome is 62.2 %, while the corresponding values of the LSC, SSC and IR regions are 64.0, 68.6 and 57.0 %, respectively.
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References
Doyle JJ (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
Huang DI, Cronk QCB (2015) Plann: a command-line application for annotating plastome sequences. Appl Plant Sci 3:1500026
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079
Lohse M, Drechsel O, Kahlau S, Bock R (2013) OrganellarGenomeDRAW–a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucl Acids Res 41:W575–W581
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821–829
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This work was financially supported by the National Natural Science Foundation of China (31590821).
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Wang, Y., Guo, X., Hao, G. et al. The complete chloroplast genome of Sinadoxa corydalifolia (Adoxaceae). Conservation Genet Resour 8, 303–305 (2016). https://doi.org/10.1007/s12686-016-0559-2
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DOI: https://doi.org/10.1007/s12686-016-0559-2