Deep Sea Research Part II: Topical Studies in Oceanography
Species boundaries of Gulf of Mexico vestimentiferans (Polychaeta, Siboglinidae) inferred from mitochondrial genes
Introduction
For the better part of the last century, marine biologists assumed oceans were largely interconnected by currents that enabled larvae and propagules to reach distant shores and assure gene flow even over great distances. More recently, the use of molecular tools has challenged assumptions regarding population structure and speciation in the ocean and demonstrated that marine animals often have genetically distinct populations despite geographic proximity (Palumbi and Warner, 2003). Although sharp genetic breaks between close populations have been recorded throughout the ocean, most of what is known about speciation patterns and phylogeography has been inferred from shallow-water and coastal systems, which represent only about 15% of the aquatic environment. Thus, our knowledge of processes that lead to population divergence and speciation in the open ocean is relatively limited (Thornhill et al., 2008, and references therein; Zardus et al., 2006).
Vestimentiferan tubeworms, which include 10 genera in the polychaete family Siboglinidae (Halanych et al., 2001, Kojima et al., 2002, McMullin et al., 2003, Rouse, 2001), are abundant at deep-sea hydrothermal vents and cold seeps at depths ranging from 80 to 9345 m (Cordes et al., 2007b, Mironov, 2000, Miura et al., 2002). In the deep Gulf of Mexico, six morphospecies have been reported (Cordes et al., 2009). Two described species, Lamellibrachia luymesi (van der Land and Narrevang, 1975) and Seepiophila jonesi (Gardiner et al., 2001), are relatively well studied, and their ecology and physiology are well understood (Bergquist et al., 2002, Cordes et al., 2007a, Cordes et al., 2007b). They occur on the upper Louisiana slope at between ∼500 and 950 m depth and occasionally co-occur with a rare undescribed species, escarpiid sp. nov. The three other morphological species are found on the lower Louisiana slope at depths greater than about 950 m (Lamellibrachia sp. 1, L. sp. 2, and Escarpia laminata).
In this paper, we present phylogenetic hypotheses based on the mitochondrial large ribosomal subunit rDNA gene (16S) and mitochondrial cytochrome oxidase 1 gene (COI) of over 200 vestimentiferans (sequenced for either or both genes) including 180 individuals from the six morphospecies that occur in the Gulf of Mexico. Phylogenetic trees are used to examine the distribution of vestimentiferans in the Gulf of Mexico and their relations to other vestimentiferans around the world. We examined the concordance between the morphological and phylogenetic data to identify differences between the genealogical and morphological species analyzed. Finally, we compared between- and within-species 16S and COI genetic distances and show that these two mitochondrial genes have little utility as “barcoding molecules” for vestimentiferans.
Section snippets
Collection of material
Vestimentiferans were collected in the deep Gulf of Mexico from 12 sites on two cruises in 2006 and 2007, using the DSV ALVIN and R.V. Atlantis in 2006 and ROV JASON II and the NOAA ship Ronald Brown in 2007 (see Fig. 1). Vestimentiferans were collected using either the Bushmaster Jr. collection device (for samples destined also for community ecology analyses, see Cordes et al., 2010) or the submersible manipulators and placed directly into a collection box. Aboadship, all vestimentiferans were
Results
The complete COI dataset includes 146 sequences (Table 1) of the six Gulf of Mexico (GOM) cold-seep morphospecies, the available GenBank sequences of E. southwardae, E. spicata, and assorted Lamellibrachia species from around the world. Sequences from the hydrothermal vent-dwelling genera Riftia, Oasisia, Tevnia, and Arcovestia were used as outgroups. We restricted our analyses to the species’ boundaries for Lamellibrachia, Escarpia, and Seepiophila, and we do not infer higher level
Distribution of vestimentiferan species in the Gulf of Mexico and relation to other seep species
Vestimentiferans have been collected from both hydrothermal vent and cold-seep sites. The vent and seep species fall into two different clades. However, it should be noted that “seep species” are sometimes found in sedimented hydrothermal vent areas with low levels of diffuse flow, and that “cold-seep” fluids may have temperatures elevated over background (Black et al., 1998, Kojima et al., 1997, MacDonald et al., 2000, Joye et al., 2005); so this separation really reflects more aspects of
Summary
In this study, our primary goals were to identify and characterize the distributions of vestimentiferans at seep sites covering a wide geographic and depth range in the Gulf of Mexico and to investigate their relationship to other seep vestimentiferan species, using phylogenetic analysis of mitochondrial gene sequences. Although the genetic analyses confirmed identification of most of the morphological species during collections, we also identified an unexpected discrepancy between the
Acknowledgments
This work was funded by a subcontract to Bureau of Ocean Energy Management, Regulation and Enforcement (BOEMRE) contract #1435-01-05-39187, "Investigations of Chemosynthetic Communities on the Lower Continental Slope of the Gulf of Mexico (Chemo III),” with vessel and submergence facilities support provided by National Oceanic and Atmospheric Administration's Office of Ocean Exploration and Research. This study would not have been possible without the support and expertise of the captains,
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