Numerical study on salinity stratification in the Pamlico River Estuary

https://doi.org/10.1016/j.ecss.2008.07.014Get rights and content

Abstract

The variations of current circulation, salt intrusion, and vertical stratification under different river flow and wind conditions in the Pamlico River Estuary (PRE) were investigated in this paper using a three-dimensional numerical model. The model was calibrated and verified against water level variation, temperature, and salinity variations during 2003 and 2001, respectively. Eight sensitivity tests were conducted with different river flow and wind conditions specified in the model. Model results show that salinity intruded further upstream under scenarios with low flow, downriver local wind, and remote-wind-caused water level set-up conditions. In contrast, the responses of salinity stratification to different environmental forcing functions were different in different portions of the estuary. Salinity stratification was enhanced under high flow condition at the lower part of the estuary, under upriver wind near the river mouth, under downriver wind at the upstream to middle portion of the estuary, and under remote-wind-caused water level set-up condition at the majority of the estuary except near the river mouth. Model results also show that across-channel wind tended to reduce salt intrusion and salinity stratification in the PRE through increased vertical mixing.

Introduction

Estuary acts as a bridge between riverine and marine system, transporting dissolved substances and suspended particles from river to costal area. In the past several decades, coastal environment becomes more stressed by pollutants introduced from land. The fates of the pollutants are strongly affected by physical processes, which interplay with biogeochemical processes in estuaries (Boyer et al., 1994, Lin et al., 2008a). In micro-tidal, partially mixed estuaries, a typical estuarine gravitational circulation mode, with net seaward current near surface and net landward current near bottom, is often observed. Its driving mechanism is commonly attributed to longitudinal baroclinic pressure gradients and the viscosity acting against it (Pritchard, 1956, Hansen and Rattray, 1965, Goodrich and Blumberg, 1991). The gravitational circulation is further influenced by factors such as earth's rotation, local topography, river flow, salinity intrusion, tide and wind forcing (Friedrichs and Hamrick, 1996, Kasai et al., 2000, Wong and Valle-Levinson, 2002, Guo and Valle-Levinson, 2007). In addition, lateral circulation can sometimes play important roles in material transport in estuaries (Valle-Levinson et al., 2003, Reynolds-Fleming and Luettich, 2004). A three-dimensional approach is often required to examine the basic transport fields in estuaries with complex geometry.

Pamlico River Estuary (PRE) is a micro-tidal, partially mixed estuary in the east of North Carolina (NC), USA (Fig. 1). Extending from Washington, NC to Pamlico Sound, the PRE is about 60 km long and 3 m deep in average. It gradually widens from 0.5 km at Washington to 6.5 km at its river mouth. In this shallow estuary, bottom water hypoxia occurs frequently during warm seasons (Hobbie et al., 1975, Stanley and Nixon, 1992, Lin et al., 2008b). Close correlations between bottom DO concentration and salinity stratification have been frequently observed, especially at the upper to middle portions of the estuary (Stanley and Nixon, 1992, Lin et al., 2008b). Accurate prediction of salinity stratification is critical in predicting bottom water hypoxia in this shallow estuary.

Within the PRE, mean astronomical tidal range is usually less than 0.1 m (Stanley and Nixon, 1992, Lin et al., 2007, Reed et al., 2008). In contrast, wind-induced tides in the Pamlico Sound area can reach 0.5–0.7 m. Luettich et al. (2002) identified a 13.2 h-period wind seiching in the Pamlico Sound system. The general circulation pattern of the PRE is dominated by wind, freshwater discharge and salinity-induced currents (Weisberg and Pietrafesa, 1983, Stanley and Nixon, 1992). Salinity stratification is mainly controlled by freshwater discharge and wind (Stanley and Nixon, 1992, Lin et al., 2008b).

In order to have a better prediction of salinity stratification (which correlates well with bottom hypoxia) in the PRE, a three-dimensional hydrodynamic model is applied to examine current circulation, salinity intrusion and stratification responses to different river flow and wind conditions. The model was first calibrated and verified using field data during 2003 and 2001, respectively. Model experiments were then conducted, which were driven by different environmental forcing.

Section snippets

Model description

A three-dimensional hydrodynamic model, EFDC (Environmental Fluid Dynamics Code) is used in this study. EFDC was developed by Hamrick (1996) and has been successfully employed in many water bodies such as estuaries, lakes, and costal bays (Kuo et al., 1996, Shen et al., 1999, Lin and Kuo, 2003, Shen and Haas, 2004, Park et al., 2005, Shen and Lin, 2006, Lin et al., 2007, Lin et al., 2008a). EFDC solves the Navier–Stokes equation for a water body with free surface and incorporates a modified

Base case

The model results of vertically averaged salinity and current distributions are presented in Fig. 5. Under the base case (Fig. 5a), the model-simulated salinity reached near the mouth of Bath Creek, which is approximately 35 km upriver from the mouth of the PRE. The model results also show that an across-channel salinity gradient exists, with fresher water hugging the southern shore. No wind was applied under the base case and this across-channel asymmetry of salinity is primarily due to the

Discussion

Based on Hansen and Rattray's central region theory, the magnitudes of both the two-layer flow and salinity anomaly (stratification) are functions of water depth. One would expect that gravitational flow and salinity stratification are usually weak in shallow estuaries. The average depth of PRE is about 3 m (channel depth 4.5 m), much shallower than many estuaries in the east coast of US (e.g., tributaries of Chesapeake Bay, Hudson River, Delaware Bay). However, salinity stratification often

Conclusion

The most important findings of this research work are perhaps that the response of salinity distribution in the PRE to various environmental forcing is very different in different portions of the estuary. In addition, in the PRE, salinity stratification tends to be most sensitive to changes of river discharge, while the distance of salinity intrusion is very sensitive to additional factors such as water level set-up/set-down at the estuary mouth and along-river wind.

Compared to some other

References (42)

  • J. Shen et al.

    Calculating age and residence time in the tidal York River using three-dimensional model experiments

    Estuarine, Coastal and Shelf Science

    (2004)
  • J. Shen et al.

    Modeling study of the influences of tide and stratification on age of water in the tidal Jams River

    Estuarine, Coastal and Shelf Science

    (2006)
  • J.D. Bowen et al.

    Neuse River Estuary Modeling and Monitoring Project Stages 1: Predictions and Uncertainty Analysis of Response to Nutrient Loading Using a Mechanistic Eutrophication Model

    (2000)
  • J.N. Boyer et al.

    Dynamics if NH4+ and NO3− uptake in the water column of Neuse River Estuary, North Carolina

    Estuaries

    (1994)
  • K.R. Dyer

    Estuaries: a Physical Introduction

    (1997)
  • C.T. Friedrichs et al.

    Effects of channel geometry on cross-sectional variation in along-channel velocity in partially stratified estuary. Buoyancy effect on coastal and estuarine dynamics

  • B. Galperin et al.

    A quasi-equilibrium turbulence energy model for geophysical flows

    Journal of Atmospheric Science

    (1988)
  • W.R. Geyer et al.

    The dynamics of a partially mixed estuary

    Journal of Physical Oceanography

    (2000)
  • J.M. Hamrick

    User's Manual of the Environmental Fluid Dynamics Computer Code. Special Report in Applied Marine Science and Ocean Engineering No. 331

    (1996)
  • D.V. Hansen et al.

    Gravitational circulation in straits and estuaries

    Journal of Marine Research

    (1965)
  • R.D. Hetland et al.

    An idealized study of dynamically controlled estuarine scales

    Journal of Physical Oceanography

    (2004)
  • Cited by (48)

    • When river water meets seawater: Insights into primary marine aerosol production

      2022, Science of the Total Environment
      Citation Excerpt :

      In terms of the production of primary aerosols, there are two major points to consider in such coastal oceans. First, in association with river discharge (Xu et al., 2008; Cloern et al., 2017), salinity values increase between fresh river water (low salinity of <0.5‰) to mixed water along coastlines and estuaries (moderate salinity of 0.5–29‰), and then to saline water in the oceans (high salinity of >29‰). This spatial distribution pattern of salinity is of great importance to the production of primary aerosols in river–estuary–ocean systems.

    • A three-dimensional environmental hydrodynamic model, Fantom-Refined: Validation and application for saltwater intrusion in a meso-macrotidal estuary

      2019, Ocean Modelling
      Citation Excerpt :

      In addition, it allows the non-rectangle computational domain using the unstructured connections between the cells such as the hydrodynamic model developed by Chen (2011), which also uses the Cartesian type grid. Further, many studies investigated the saltwater intrusion in partially mixed estuaries (Li et al., 2005; Xu et al., 2008) and salt wedge estuaries (Ralston et al., 2010; Wang et al., 2011). Additionally, a few studies simulated the change from partially mixed to salt wedge conditions in estuaries (Warner et al., 2005; Gong and Shen, 2011).

    • Saline water intrusion in relation to strong winds during winter cold outbreaks: North Branch of the Yangtze Estuary

      2019, Journal of Hydrology
      Citation Excerpt :

      In those estuaries, the along-channel local winds could apparently affect the saline water intrusion. Down-estuary and up-estuary winds increase and curb the circulation, respectively, resulting in an increase and decrease of saline water intrusion, as is the cases in the Lower Patos Lagoon Estuary (Costa et al., 1988) and the Pamlico River Estuary (Xu et al., 2008). In addition, outside the Yangtze Estuary there are alongshore currents from the north in winter season.

    • Seasonal variability of turbidity, salinity, temperature and suspended chlorophyll in a strongly tidal sub-estuary: The Lynher Marine Conservation Zone

      2018, Estuarine, Coastal and Shelf Science
      Citation Excerpt :

      A period of larger tides over the previous several days similarly leads to incoming waters that have higher salinity, whereas a period of stronger winds tends to reduce the Lynher-mouth salinity at HW, which may be caused by wind-enhanced vertical mixing and reduced gravitational circulation (e.g. Officer, 1976) in the lower Tamar Estuary, thereby increasing the residence time of fresh water there. The influence of wind effects on salinity distributions and salinity stratification has been observed in numerous other estuaries (e.g., Barlow, 1956; Goodrich et al., 1987; Van de Kreeke and Robaczewska, 1989; Blumberg and Goodrich, 1990; Geyer, 1997; Dellapenna et al., 1998; Scully et al., 2005; Xu et al., 2008; Chen and Sanford, 2009; Behrens et al., 2016). The Lynher has a small but persistent ETM that is closely associated with the FSI and located typically 2 km farther down-estuary at HW.

    View all citing articles on Scopus
    View full text