Review
Structural and biochemical studies of GH family 12 cellulases: improved thermal stability, and ligand complexes

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Abstract

In this review we will describe how we have gathered structural and biochemical information from several homologous cellulases from one class of glycoside hydrolases (GH family 12), and used this information within the framework of a protein-engineering program for the design of new variants of these enzymes. These variants have been characterized to identify some of the positions and the types of mutations in the enzymes that are responsible for some of the biochemical differences in thermal stability and activity between the homologous enzymes. In this process we have solved the three-dimensional structure of four of these homologous GH 12 cellulases: Three fungal enzymes, Humicola grisea Cel12A, Hypocrea jecorina Cel12A and Hypocrea schweinitzii Cel12A, and one bacterial, Streptomyces sp. 11AG8 Cel12A. We have also determined the three-dimensional structures of the two most stable H. jecorina Cel12A variants. In addition, four ligand-complex structures of the wild-type H. grisea Cel12A enzyme have been solved and have made it possible to characterize some of the interactions between substrate and enzyme. The structural and biochemical studies of these related GH 12 enzymes, and their variants, have provided insight on how specific residues contribute to protein thermal stability and enzyme activity. This knowledge can serve as a structural toolbox for the design of Cel12A enzymes with specific properties and features suited to existing or new applications.

Keywords

Glycoside hydrolase
Endoglucanase
GH family 12
Protein engineering
Protein structure
Thermal stability

Abbreviations

CBH
Cellobiohydrolase
CBM
Cellulose binding module
CD
circular dichroism
cd
catalytic domain
DP
Degree of polymerization
EG
Endoglucanase
F. javanicum
Fusarium javanicum
GH
Glycoside hydrolase
GH 12
Glycoside hydrolase family 12
G. roseum
Gliocladium roseum
G2
Cellobiose
G2SG2
Methyl 4-S-β-cellobiosyl-4-thio-β-cellobioside
G4
Cellotetraose
G5
Cellopentaose
H. grisea
Humicola grisea
H. jecorina
Hypocrea jecorina
H. koningii
Hypocrea koningii
H. schweinitzii
Hypocrea schweinitzii
NAG
N-acetyl-glucosamine
NCS
Non-crystallographic symmetry
oNPC
o-Nitrophenyl-β-cellobioside
pNPC
p-Nitrophenyl-β-cellobioside
S. sp. 11AG8
Streptomyces sp. 11AG8
Tm
The mid-point of thermal denaturation
T. reesei
Trichoderma reesei
WT
Wild type

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