The three-dimensional incompressible flow past a rectangular two-dimensional shallow cavity in a channel is investigated using large-eddy simulation (LES). The aspect ratio (length/depth) of the cavity is $L/D\,{=}\,2$ and the Reynolds number defined with the cavity depth and the mean velocity in the upstream channel is 3360. The sensitivity of the flow around the cavity to the characteristics of the upstream flow is studied by considering two extreme cases: a developing laminar boundary layer upstream of the cavity and when the upstream flow is fully turbulent. The two simulations are compared in terms of the mean statistics and temporal physics of the flow, including the dynamics of the coherent structures in the region surrounding the cavity. For the laminar inflow case it is found that the flow becomes unstable but remains laminar as it is convected over the cavity. Due to the three-dimensional flow instabilities and the interaction of the jet-like flow inside the recirculation region with the separated shear layer, the spanwise vortices that are shed regularly from the leading cavity edge are disturbed in the spanwise direction and, as they approach the trailing-edge corner, break into an array of hairpin-like vortices that is convected downstream the cavity close to the channel bottom. In the fully turbulent inflow case in which the momentum thickness of the incoming boundary layer is much larger compared to the laminar inflow case, the jittering of the shear layer on top of the cavity by the incoming near-wall coherent structures strongly influences the formation and convection of the eddies inside the separated shear layer. The mass exchange between the cavity and the main channel is investigated by considering the ejection of a passive scalar that is introduced instantaneously inside the cavity. As expected, it is found that the ejection is faster when the incoming flow is turbulent due to the interaction between the turbulent eddies convected from upstream of the cavity with the separated shear layer and also to the increased diffusion induced by the broader range of scales that populate the cavity. In the turbulent case it is shown that the eddies convected from upstream of the cavity can play an important role in accelerating the extraction of high-concentration fluid from inside the cavity. For both laminar and turbulent inflow cases it is shown that the scalar ejection can be described using simple dead-zone theory models in which a single-valued global mass exchange coefficient can be used to describe the scalar mass decay inside cavity over the whole ejection process.