Generalized Lévy-walk model for DNA nucleotide sequences

Sergey V. Buldyrev, Ary L. Goldberger, Shlomo Havlin, Chung-Kang Peng, Michael Simons, and H. Eugene Stanley
Phys. Rev. E 47, 4514 – Published 1 June 1993
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Abstract

We propose a generalized Lévy walk to model fractal landscapes observed in noncoding DNA sequences. We find that this model provides a very close approximation to the empirical data and explains a number of statistical properties of genomic DNA sequences such as the distribution of strand-biased regions (those with an excess of one type of nucleotide) as well as local changes in the slope of the correlation exponent α. The generalized Lévy-walk model simultaneously accounts for the long-range correlations in noncoding DNA sequences and for the apparently paradoxical finding of long subregions of biased random walks (length lj) within these correlated sequences. In the generalized Lévy-walk model, the lj are chosen from a power-law distribution P(lj)∝ljμ. The correlation exponent α is related to μ through α=2-μ/2 if 2<μ<3. The model is consistent with the finding of ‘‘repetitive elements’’ of variable length interspersed within noncoding DNA.

  • Received 6 January 1993

DOI:https://doi.org/10.1103/PhysRevE.47.4514

©1993 American Physical Society

Authors & Affiliations

Sergey V. Buldyrev

  • Center for Polymer Studies and Department of Physics, Boston University, Boston, Massachusetts 02215

Ary L. Goldberger

  • Cardiovascular Division, Harvard Medical School, Beth Israel Hospital, Boston, Massachusetts 02215

Shlomo Havlin

  • Center for Polymer Studies and Department of Physics, Boston University, Boston, Massachusetts 02215
  • Department of Physics, Bar-Ilan University, Ramat-Gan, Israel

Chung-Kang Peng

  • Center for Polymer Studies and Department of Physics, Boston University, Boston, Massachusetts 02215

Michael Simons

  • Cardiovascular Division, Harvard Medical School, Beth Israel Hospital, Boston, Massachusetts 02215

H. Eugene Stanley

  • Center for Polymer Studies and Department of Physics, Boston University, Boston, Massachusetts 02215

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Vol. 47, Iss. 6 — June 1993

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