DNA electrophoretic collisions with single obstacles

Grant I. Nixon and Gary W. Slater
Phys. Rev. E 50, 5033 – Published 1 December 1994
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Abstract

We analyze the electrophoretic collision between an obstacle, such as a gel fiber, and a large diffusing polyelectrolyte. This type of collision may be considered as the basic unit of elementary sieving behind all electrophoretic separation methods. The polymer first hooks around an obstacle and must escape using a simple ‘‘pulley’’ process which requires a molecular-size-dependent time. We demonstrate, using both analytical and simulation results, that simple isolated collisions cannot lead to separation due to large diffusion effects generated by the process (in spite of the stacking phenomenon).

  • Received 25 May 1994

DOI:https://doi.org/10.1103/PhysRevE.50.5033

©1994 American Physical Society

Authors & Affiliations

Grant I. Nixon and Gary W. Slater

  • Department of Physics, University of Ottawa, 150 Louis Pasteur, Ottawa, Ontario, Canada K1N 6N5

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Vol. 50, Iss. 6 — December 1994

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